genome.fa.s7.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  70  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23075730--23075757	14	2.0	14	100	0	56	21	7	0	71	1.09
23076315--23076347	8	4.2	8	96	3	59	24	0	0	75	0.80
23077046--23077088	23	1.9	22	85	4	59	69	4	0	25	1.07
23077382--23077434	13	4.1	13	76	9	63	37	24	5	32	1.79
23079985--23080048	27	2.4	27	89	2	94	53	6	1	39	1.36
23080034--23080066	17	1.9	17	93	0	57	57	18	0	24	1.40
23089681--23089735	25	2.2	26	80	6	69	23	0	5	70	1.07
23089689--23089756	24	2.8	25	80	10	70	30	2	2	63	1.24
23089840--23089882	19	2.3	19	81	18	63	27	0	2	69	1.00
23089844--23089882	18	2.2	18	90	9	62	25	0	2	71	0.98
23089865--23089909	15	3.1	15	81	15	58	33	0	0	66	0.92
23093822--23093854	13	2.4	14	95	5	59	54	15	3	27	1.55
23095656--23095707	20	2.7	20	84	3	70	44	1	7	46	1.43
23095656--23095740	20	4.2	20	75	11	68	41	4	8	45	1.55
23096288--23096459	92	1.9	92	95	0	308	40	19	11	29	1.86
23105104--23105162	30	1.9	32	86	6	86	33	13	23	28	1.93
23115088--23115114	14	1.9	14	100	0	54	14	25	22	37	1.93
23115164--23115204	22	1.9	22	85	5	57	51	0	4	43	1.23
23118597--23118707	51	2.2	50	87	3	159	29	35	19	15	1.93
23124549--23124623	22	3.5	20	77	10	78	33	1	8	57	1.36
23124549--23124635	42	2.1	42	85	8	115	32	2	9	56	1.43
23124549--23124635	10	8.3	10	77	9	75	32	2	9	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23124549--23124625	32	2.4	32	91	0	127	33	1	9	55	1.39
23131544--23131596	21	2.5	21	81	6	63	16	15	28	39	1.89
23140146--23140225	25	3.2	25	83	0	79	36	22	18	22	1.95
23152875--23152987	34	3.2	34	62	16	86	35	12	18	33	1.88
23152841--23153021	71	2.5	71	95	0	317	33	12	19	33	1.90
23165263--23165317	22	2.5	22	93	0	101	32	5	18	43	1.73
23167754--23168203	223	2.0	224	99	0	893	39	8	7	45	1.61
23177047--23177076	5	6.0	5	100	0	60	80	0	0	20	0.72
23179663--23179723	29	2.1	29	87	0	86	26	31	22	19	1.98
23179859--23179934	19	4.0	20	71	19	63	28	23	30	17	1.97
23185093--23185126	16	2.2	15	94	5	59	64	5	5	23	1.38
23186358--23186423	21	3.1	21	82	0	87	4	31	15	48	1.65
23189426--23189460	17	2.1	17	94	0	61	34	5	48	11	1.63
23189548--23189704	30	5.2	29	93	3	251	49	0	11	38	1.39
23189548--23189704	59	2.6	59	93	3	260	49	0	11	38	1.39
23190016--23190096	39	2.1	39	97	0	153	55	8	14	20	1.66
23193358--23193412	21	2.6	21	85	0	74	30	40	7	21	1.81
23209954--23210011	18	3.2	18	80	7	64	65	1	29	3	1.19
23215572--23215625	25	2.1	26	82	3	65	38	0	16	44	1.48
23215593--23215635	17	2.7	15	80	16	50	46	0	11	41	1.40
23219095--23219176	43	2.0	41	87	4	119	50	2	21	25	1.61
23222027--23222111	43	2.0	43	90	0	134	49	3	21	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23232782--23232835	19	2.8	19	94	0	99	37	16	9	37	1.81
23233637--23233722	32	2.7	31	80	7	109	29	34	18	17	1.94
23239557--23239584	3	9.3	3	100	0	56	67	0	0	32	0.91
23240100--23240134	18	1.9	18	94	0	61	31	2	0	65	1.07
23240087--23240145	19	2.9	20	80	14	68	37	1	0	61	1.07
23240713--23240748	3	12.0	3	100	0	72	66	0	0	33	0.92
23242871--23243188	106	3.0	106	97	0	582	39	16	22	21	1.91
23246788--23246980	97	2.0	95	94	4	343	46	11	19	21	1.82
23251369--23251759	196	2.0	194	87	4	554	43	14	15	26	1.85
23252959--23253028	36	2.0	36	88	2	106	34	18	27	20	1.96
23257587--23257656	16	4.4	16	88	0	95	38	2	32	25	1.71
23261345--23261403	18	3.3	18	95	0	100	25	18	16	38	1.92
23261380--23261430	25	2.0	25	84	0	66	23	15	19	41	1.90
23261779--23261840	20	3.1	20	81	4	72	9	27	19	43	1.82
23262080--23262245	43	3.8	44	81	10	173	21	14	22	41	1.89
23268114--23268150	19	2.0	19	94	5	67	37	5	10	45	1.62
23268539--23268585	22	2.1	22	92	0	76	36	17	19	27	1.93
23268549--23268643	23	4.2	22	86	6	111	33	14	21	30	1.93
23278482--23278571	45	2.0	45	97	0	171	23	11	23	42	1.86
23285485--23285510	7	3.7	7	100	0	52	42	11	0	46	1.40
23301080--23301125	20	2.3	20	84	0	56	21	28	30	19	1.98
23305148--23305185	16	2.4	16	90	0	58	13	15	13	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23315181--23315217	15	2.6	14	88	12	58	35	0	16	48	1.46
23315443--23315490	25	1.9	25	86	0	69	29	4	20	45	1.70
23315468--23315515	20	2.4	20	73	13	53	39	2	16	41	1.60
23317156--23317190	18	1.9	18	88	0	52	25	14	20	40	1.90
23321115--23321170	18	3.1	17	79	5	58	26	14	16	42	1.86
23324404--23324596	41	4.7	41	74	8	151	37	29	17	15	1.91
23324408--23324596	82	2.3	82	78	8	206	37	29	17	15	1.91
23324461--23324639	82	2.2	81	81	3	198	37	29	17	15	1.91
23331007--23331039	7	4.7	7	92	7	50	87	3	9	0	0.63
23332828--23332860	7	4.7	7	92	7	50	87	3	9	0	0.63
23342625--23342669	22	2.0	23	82	4	56	35	24	15	24	1.94
23353180--23353204	3	8.3	3	100	0	50	32	36	0	32	1.58
23383906--23383944	20	1.9	21	84	5	53	38	0	17	43	1.50
23395190--23395227	19	2.0	20	84	5	51	76	0	13	10	1.02
23398565--23398773	41	5.1	41	87	0	310	37	17	28	16	1.92
23412810--23412878	32	2.2	32	92	2	113	23	7	30	39	1.82
23416839--23416884	22	2.1	22	95	0	83	4	10	21	63	1.44
23418284--23418322	19	2.1	19	85	0	51	33	5	12	48	1.63
23418450--23418474	7	3.6	7	100	0	50	0	12	0	88	0.53
23421982--23422531	136	4.0	136	96	0	967	46	5	7	39	1.57
23422072--23422422	71	5.1	71	63	22	228	47	6	8	38	1.59
23422507--23422653	75	2.0	75	90	5	235	31	14	7	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23423204--23423236	17	1.9	17	88	11	50	33	6	27	33	1.81
23426209--23426307	30	3.3	30	76	8	85	42	12	24	21	1.86
23437701--23437768	25	2.6	25	81	4	73	23	26	25	25	2.00
23451198--23451250	24	2.3	22	80	6	61	66	9	1	22	1.31
23456191--23456238	18	2.8	17	90	6	71	45	2	2	50	1.25
23461504--23461533	3	10.0	3	100	0	60	0	33	0	66	0.92
23467767--23467808	19	2.3	18	84	8	50	42	2	4	50	1.36
23471230--23471292	30	2.1	30	85	8	85	33	1	7	57	1.37
23472758--23474402	549	3.0	549	99	0	3263	38	6	19	35	1.79
23474905--23474961	21	2.7	22	78	10	66	33	22	21	22	1.97
23474906--23474974	21	3.3	21	77	4	59	33	21	20	24	1.97
23477478--23477533	20	2.7	21	78	13	55	46	12	3	37	1.59
23477498--23477539	21	2.0	22	85	4	59	45	16	4	33	1.69
23483913--23483945	15	2.1	16	94	5	59	27	12	6	54	1.60
23494824--23494865	22	2.0	21	90	4	66	45	0	40	14	1.45
23510558--23510597	21	1.9	21	89	0	62	27	0	20	52	1.46
23514910--23514944	14	2.4	15	90	4	54	11	2	0	85	0.69
23519605--23519644	6	6.8	6	88	5	64	82	0	17	0	0.67
23520909--23521486	88	6.6	88	89	0	852	27	29	24	19	1.98
23521486--23521944	44	10.7	44	80	7	498	28	17	25	28	1.98
23521486--23521947	126	3.6	126	89	2	685	28	17	25	28	1.98
23523816--23523851	12	3.1	11	92	8	54	11	2	0	86	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23524718--23524910	97	2.0	98	95	2	352	36	10	22	30	1.88
23543514--23543551	17	2.2	17	95	0	67	18	26	34	21	1.96
23545029--23545143	44	2.7	43	70	18	103	26	20	26	26	1.99
23547113--23547150	18	2.1	19	90	5	60	15	23	0	60	1.35
23547233--23547271	19	2.1	19	90	0	60	41	17	17	23	1.91
23549170--23549253	43	2.0	43	85	0	114	54	1	20	23	1.51
23550557--23550657	49	2.1	49	90	0	157	44	5	23	25	1.76
23562071--23562099	11	2.5	12	88	11	51	75	0	24	0	0.80
23564006--23564124	30	4.1	29	88	7	172	29	8	19	42	1.80
23564006--23564125	58	2.1	59	88	4	181	29	8	19	43	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79