genome.fa.s7.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  46  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15464597--15464678	22	3.7	23	75	14	73	29	14	30	25	1.95
15464639--15464735	22	4.4	21	76	5	86	35	17	26	20	1.95
15466795--15466819	13	1.9	13	100	0	50	8	32	32	28	1.86
15474583--15474635	19	2.7	19	88	8	72	60	3	0	35	1.15
15478213--15478246	16	2.1	16	88	0	50	50	0	2	47	1.16
15478306--15478361	21	2.8	19	75	19	60	48	1	3	46	1.30
15478370--15478411	22	2.0	21	90	4	66	64	4	16	14	1.45
15479044--15479072	15	1.9	15	100	0	58	13	10	6	68	1.37
15483800--15483833	16	2.1	16	88	0	50	50	0	2	47	1.16
15483893--15483948	21	2.8	19	75	19	60	48	1	3	46	1.30
15483957--15483998	22	2.0	21	90	4	66	64	4	16	14	1.45
15485242--15485375	62	2.2	58	85	5	178	41	2	2	52	1.29
15486772--15486839	31	2.2	31	84	10	86	44	20	10	25	1.83
15490119--15490171	25	2.1	25	89	0	79	11	22	7	58	1.57
15490314--15490354	21	2.0	21	95	0	73	56	4	29	9	1.53
15492997--15493023	11	2.5	11	100	0	54	51	18	7	22	1.70
15500776--15500824	24	2.0	24	100	0	98	42	12	12	32	1.79
15504322--15504455	70	1.9	71	89	3	207	32	17	9	39	1.83
15506241--15506265	6	4.2	6	100	0	50	0	16	32	52	1.44
15511437--15511585	74	2.0	75	98	1	291	30	5	14	49	1.66
15514404--15514644	129	1.9	129	82	3	306	24	26	18	31	1.98
15514399--15514668	129	2.1	129	80	4	303	24	27	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15514392--15514669	43	6.5	43	76	6	249	23	26	18	30	1.98
15518069--15518514	222	2.0	223	99	0	885	38	21	14	26	1.91
15519705--15519746	19	2.2	19	86	0	57	23	2	45	28	1.66
15520509--15520538	15	2.0	15	93	0	51	33	3	0	63	1.11
15520674--15520729	21	2.6	22	77	8	62	44	32	1	21	1.63
15520658--15520727	14	5.1	14	74	8	54	42	31	2	22	1.68
15521256--15521700	114	3.9	112	73	4	390	24	21	24	29	1.99
15521311--15521781	228	2.1	228	91	0	753	24	19	25	30	1.98
15521424--15521781	114	3.1	112	70	13	316	24	19	25	31	1.98
15523467--15523498	1	32.0	1	100	0	64	100	0	0	0	0.00
15523822--15523898	13	5.9	13	72	11	68	29	6	25	37	1.81
15528628--15528711	36	2.3	37	78	10	93	15	13	28	42	1.84
15531393--15531449	20	2.8	20	80	17	73	31	14	12	42	1.82
15533375--15533423	24	2.0	24	92	0	80	26	18	22	32	1.97
15535177--15535202	11	2.4	11	100	0	52	57	7	7	26	1.54
15548955--15549069	40	2.8	41	74	8	110	35	16	25	22	1.95
15549054--15549504	114	4.0	114	88	0	609	32	20	19	28	1.96
15549898--15550088	14	13.4	14	70	15	81	17	1	32	49	1.54
15549901--15549975	21	3.6	21	77	8	73	20	1	29	49	1.57
15549978--15550027	21	2.3	22	81	18	61	8	0	42	50	1.32
15550045--15550088	7	6.3	7	82	10	54	18	0	31	50	1.47
15550031--15550084	21	2.5	22	82	11	67	20	1	27	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15549930--15550151	102	2.2	101	86	7	315	16	0	33	50	1.49
15551315--15551384	27	2.6	27	80	17	99	25	17	10	47	1.78
15555209--15555237	14	2.1	14	93	6	51	34	0	10	55	1.34
15555908--15556150	43	5.6	43	78	3	195	33	20	20	25	1.97
15555918--15556150	87	2.7	86	82	4	247	34	20	20	24	1.96
15556007--15556174	43	3.9	43	78	4	135	31	22	20	25	1.98
15556161--15556239	35	2.3	35	88	0	122	26	18	20	34	1.96
15584470--15584535	27	2.4	27	82	0	87	33	16	18	31	1.93
15588795--15588836	22	1.9	22	85	9	59	61	7	2	28	1.35
15593453--15593494	13	3.2	13	80	16	50	21	0	4	73	1.01
15593847--15593885	17	2.3	17	86	0	51	84	5	0	10	0.76
15596428--15596572	72	2.0	72	90	0	227	32	14	19	33	1.92
15598417--15598480	32	2.0	32	100	0	128	31	12	6	50	1.65
15604588--15604774	51	3.7	48	79	7	212	27	27	19	25	1.99
15605806--15606115	27	11.5	27	82	5	324	39	15	17	27	1.90
15606239--15606324	27	3.1	27	83	5	102	22	25	22	30	1.99
15606319--15606368	26	1.9	26	87	0	73	20	22	22	36	1.96
15606468--15606524	28	2.0	28	86	0	78	22	24	22	29	1.99
15607327--15607359	11	3.1	11	91	4	50	24	3	0	72	0.98
15616733--15617898	27	43.4	27	84	1	1367	40	21	18	18	1.91
15623529--15623563	12	2.9	12	91	0	52	22	2	45	28	1.67
15630031--15630149	27	4.4	27	83	2	150	31	18	25	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15630170--15630240	23	3.0	23	87	2	88	16	7	28	47	1.73
15630175--15630252	24	3.3	23	83	5	93	19	7	25	47	1.76
15630416--15630533	32	3.7	32	72	3	112	21	19	22	36	1.95
15630439--15630558	64	1.9	64	83	0	159	20	22	21	35	1.96
15630575--15630638	22	2.9	21	74	4	65	18	20	15	45	1.86
15630633--15630685	26	2.0	26	81	0	61	20	24	18	35	1.95
15636484--15636538	26	2.1	26	100	0	110	25	29	20	25	1.99
15636734--15636812	27	3.0	26	80	12	72	22	20	21	35	1.96
15636768--15637018	27	9.2	27	88	6	364	18	17	23	39	1.92
15636765--15637003	83	2.9	82	89	6	360	18	17	24	38	1.92
15636768--15637018	137	1.8	135	89	5	398	18	17	23	39	1.92
15637599--15637645	24	1.9	24	86	4	67	25	36	0	38	1.56
15639675--15639734	28	2.1	29	84	3	77	31	21	23	23	1.98
15640121--15640354	27	8.7	27	82	5	260	22	16	15	45	1.85
15645413--15645467	28	2.0	28	92	0	92	25	43	5	25	1.76
15651840--15652046	27	7.7	27	90	4	301	21	15	19	43	1.87
15652551--15653504	477	2.0	477	100	0	1908	38	16	27	17	1.92
15658131--15658229	28	3.5	28	92	0	162	33	23	20	23	1.97
15658581--15658669	27	3.3	27	75	10	83	24	15	24	34	1.95
15658593--15658708	27	4.3	27	87	0	160	23	17	21	37	1.93
15667730--15667865	69	2.0	69	95	0	245	22	23	11	41	1.87
15669877--15669949	27	2.7	27	83	8	78	20	15	19	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15674178--15674403	27	8.3	27	88	2	285	19	16	23	39	1.92
15677644--15677822	27	6.7	27	81	4	202	20	15	20	44	1.87
15677643--15677799	81	1.9	81	88	2	235	19	15	21	43	1.87
15678776--15678834	26	2.4	24	77	8	57	47	1	0	50	1.11
15681285--15681553	43	6.3	43	79	1	245	28	25	19	26	1.99
15681285--15681553	86	3.1	86	80	2	274	28	25	19	26	1.99
15681285--15681553	129	2.1	128	83	3	335	28	25	19	26	1.99
15681578--15681621	22	1.9	24	86	9	65	40	2	2	54	1.25
15683693--15683799	40	2.7	40	86	5	146	28	17	23	30	1.97
15683696--15683799	39	2.7	38	85	5	136	28	18	22	30	1.97
15684513--15684563	14	3.6	14	80	17	61	29	45	1	23	1.64
15684479--15684563	14	6.2	13	74	15	57	31	44	2	21	1.65
15684556--15684635	21	3.8	21	72	11	56	38	37	1	22	1.62
15684976--15685215	41	5.9	41	82	3	270	32	27	17	22	1.96
15692501--15692559	26	2.4	24	77	8	57	47	1	0	50	1.11
15695044--15695215	85	2.0	86	98	1	337	40	8	17	33	1.79
15700283--15700341	26	2.4	24	77	8	57	47	1	0	50	1.11
15702361--15702604	40	5.8	40	76	11	231	21	21	25	31	1.98
15702330--15702561	127	1.8	127	94	3	414	21	20	25	31	1.98
15702361--15702604	84	2.9	86	81	8	297	21	21	25	31	1.98
15702365--15702693	127	2.6	126	79	7	297	23	21	23	31	1.98
15702361--15702956	44	13.8	43	68	14	246	25	23	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15702525--15702956	131	3.3	132	87	2	593	26	23	19	29	1.98
15703193--15703591	44	9.1	43	74	8	297	30	26	15	28	1.96
15703182--15703586	87	4.6	88	82	6	324	30	26	15	28	1.96
15703182--15703471	132	2.2	132	94	1	501	28	26	15	28	1.96
15703353--15703578	87	2.6	88	93	2	384	32	26	14	26	1.95
15703571--15703846	87	3.2	87	93	0	473	25	22	23	28	2.00
15703830--15704103	43	6.3	43	80	7	259	31	27	17	24	1.97
15703851--15704109	44	5.9	44	79	8	235	30	27	16	25	1.96
15703851--15704109	87	3.0	87	76	9	276	30	27	16	25	1.96
15703182--15704103	132	7.0	131	69	15	458	28	25	17	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79