genome.fa.s7.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  71  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23564274--23564352	41	1.9	42	89	2	124	25	18	25	30	1.98
23577805--23577885	30	2.7	30	80	0	99	28	20	27	23	1.99
23583208--23583261	21	2.8	19	76	20	51	31	1	3	62	1.23
23583674--23583698	5	5.0	5	100	0	50	60	0	0	40	0.97
23587142--23587167	11	2.4	11	100	0	52	46	0	0	53	1.00
23589593--23589631	20	1.9	21	89	5	62	33	12	10	43	1.77
23609961--23609992	15	2.2	15	94	5	57	65	0	3	31	1.08
23623552--23623618	21	3.2	20	75	10	55	53	5	0	40	1.25
23626006--23626072	21	3.2	20	75	10	55	53	5	0	40	1.25
23629341--23629365	13	1.9	13	100	0	50	64	0	4	32	1.12
23632675--23632742	35	1.9	35	90	0	109	33	8	25	32	1.86
23633723--23633761	18	2.2	18	90	9	62	12	5	2	79	1.00
23642604--23642667	7	8.9	7	80	14	51	82	9	0	7	0.83
23642605--23642666	14	4.4	14	81	4	61	82	9	0	8	0.85
23642602--23642673	30	2.4	31	84	11	96	81	9	0	8	0.86
23642603--23642673	8	9.4	8	79	14	62	81	9	0	8	0.87
23642604--23642681	22	3.5	22	77	17	65	79	10	1	8	0.99
23642601--23642683	29	2.9	29	84	12	100	78	10	1	9	1.03
23642686--23642725	6	6.3	6	86	11	53	77	0	20	2	0.88
23644792--23646032	88	14.1	88	95	0	2196	26	23	25	24	2.00
23648283--23648432	44	3.4	44	72	9	144	30	22	20	26	1.98
23652483--23652521	18	2.1	19	85	4	53	25	0	15	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23652893--23652949	22	2.5	22	81	13	64	43	1	1	52	1.21
23654752--23654782	12	2.6	12	94	0	53	70	3	25	0	1.02
23655871--23655980	37	2.8	38	73	8	87	20	20	26	31	1.98
23664973--23665012	3	13.3	3	94	0	71	0	2	32	65	1.06
23665032--23665056	6	4.2	6	100	0	50	16	0	52	32	1.44
23665231--23665273	3	14.3	3	85	0	59	0	4	30	65	1.13
23672689--23672738	26	1.9	26	95	0	91	46	10	12	32	1.74
23677953--23677986	16	2.1	16	88	0	50	29	11	23	35	1.90
23678022--23678073	25	2.0	26	88	3	79	42	9	5	42	1.61
23687546--23687691	75	1.9	75	87	2	213	29	18	23	28	1.98
23690567--23690635	31	2.2	31	92	0	111	36	10	8	44	1.69
23690859--23691204	43	8.1	43	82	3	369	29	21	19	29	1.98
23691478--23691517	21	2.0	19	90	9	62	7	42	10	40	1.67
23696582--23696936	56	6.3	56	94	1	602	36	0	19	43	1.54
23696540--23696936	170	2.3	170	92	2	654	36	0	18	44	1.56
23702335--23702484	41	3.7	41	82	5	169	24	26	19	29	1.98
23708710--23708765	28	2.0	28	100	0	112	39	17	14	28	1.89
23714011--23714052	16	2.7	15	79	13	50	28	0	9	61	1.27
23717126--23717199	25	3.2	25	60	25	63	22	14	6	55	1.63
23717127--23717213	43	2.0	43	100	0	174	25	13	6	54	1.64
23719048--23719091	16	2.8	16	80	13	54	18	4	4	72	1.19
23720672--23720733	30	2.1	30	100	0	124	24	16	32	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23722141--23722342	29	7.0	29	81	4	228	25	15	22	36	1.93
23728905--23728978	36	2.1	36	84	5	96	37	18	18	24	1.94
23728969--23729001	16	2.1	16	100	0	66	36	6	24	33	1.80
23735488--23735523	18	2.0	18	100	0	72	55	16	16	11	1.68
23737634--23737755	62	2.0	62	98	0	235	35	11	22	30	1.90
23753326--23753367	21	2.0	21	100	0	84	19	4	14	61	1.49
23754138--23754162	5	5.0	5	100	0	50	20	0	0	80	0.72
23759436--23759775	30	11.4	30	80	8	200	37	11	25	25	1.90
23759436--23759775	60	5.7	60	76	7	271	37	11	25	25	1.90
23759436--23759745	90	3.5	89	76	4	270	38	11	24	25	1.89
23759555--23759715	29	5.4	29	80	7	164	39	12	26	21	1.89
23768328--23768365	18	2.1	18	100	0	76	39	10	10	39	1.74
23770270--23770319	25	2.0	25	96	0	91	26	20	12	42	1.86
23776377--23776439	17	3.5	17	69	12	54	49	14	3	33	1.59
23776635--23776669	13	2.8	13	91	4	54	11	2	48	37	1.54
23786346--23786541	67	2.9	67	87	3	281	29	14	18	37	1.91
23786481--23786602	58	2.1	58	84	6	158	28	13	15	41	1.86
23790512--23790543	12	2.7	12	95	0	55	50	0	12	37	1.41
23790909--23791078	45	3.8	45	80	1	153	43	11	20	24	1.84
23793830--23793883	19	2.9	19	86	8	67	38	1	7	51	1.41
23793830--23793873	18	2.5	17	82	10	52	40	2	6	50	1.42
23793835--23793905	20	3.7	20	83	9	76	33	1	9	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23793833--23793905	19	3.9	20	79	12	66	35	1	9	53	1.42
23796537--23796625	33	2.7	33	84	6	117	28	12	32	26	1.92
23798043--23798096	20	2.8	20	88	2	74	27	0	3	68	1.06
23798530--23798568	14	2.7	15	88	8	62	38	0	0	61	0.96
23803118--23803233	42	2.8	42	84	5	128	18	17	16	48	1.82
23803122--23803254	21	6.3	21	74	6	99	17	17	15	49	1.80
23805867--23806200	4	83.8	4	92	0	517	25	3	26	44	1.69
23816695--23816743	22	2.3	22	85	3	64	30	4	40	24	1.74
23816857--23816882	11	2.4	11	100	0	52	0	0	7	92	0.39
23819470--23819516	24	2.0	24	87	4	69	68	6	0	25	1.13
23819475--23819508	17	1.9	18	94	5	61	70	5	0	23	1.09
23819470--23819517	23	2.0	23	88	8	69	68	6	0	25	1.12
23822509--23822551	22	2.0	22	95	0	77	20	16	34	27	1.94
23822510--23822558	22	2.2	22	88	0	71	24	20	28	26	1.99
23823604--23823633	13	2.3	13	100	0	60	43	10	16	30	1.81
23826231--23826329	29	3.5	29	79	14	109	45	19	16	19	1.86
23826231--23826320	28	3.1	28	80	9	101	44	18	16	20	1.87
23828091--23828182	43	2.2	43	96	2	168	25	4	20	50	1.67
23828871--23828905	17	2.1	17	100	0	70	42	11	5	40	1.65
23833630--23833675	11	4.4	11	89	10	78	21	8	26	43	1.81
23833634--23833728	9	10.2	9	84	6	84	25	10	24	40	1.87
23833630--23833675	20	2.2	21	92	7	76	21	8	26	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23833621--23833684	31	2.1	31	84	0	83	21	9	23	45	1.81
23833791--23833851	28	2.2	28	88	2	88	40	8	16	34	1.78
23834153--23834393	127	1.9	126	80	6	278	46	7	8	37	1.63
23835480--23835505	5	5.2	5	100	0	52	19	19	19	42	1.90
23838729--23838824	46	2.1	45	82	3	120	37	2	15	44	1.58
23839738--23839779	21	2.0	21	85	0	57	35	0	26	38	1.57
23840157--23840284	64	2.0	64	79	0	139	25	19	21	33	1.97
23842110--23842232	42	2.9	42	77	7	124	18	21	17	43	1.89
23845015--23845096	4	20.8	4	73	14	55	4	21	1	71	1.11
23845022--23845089	25	2.7	25	82	8	77	4	22	1	72	1.11
23845293--23845377	4	21.0	4	69	19	52	2	23	3	70	1.14
23845292--23845367	30	2.5	30	83	10	93	0	23	3	72	1.01
23845291--23845367	26	3.1	24	83	10	86	0	23	3	72	1.01
23845380--23845421	14	3.1	14	77	22	54	30	4	0	64	1.14
23845408--23845486	38	2.1	38	81	9	90	51	3	1	43	1.27
23849532--23849617	4	20.5	4	73	13	66	20	4	4	69	1.25
23849743--23850061	108	3.0	108	87	1	453	30	16	18	34	1.93
23851237--23851282	24	1.9	24	82	8	58	54	10	0	34	1.36
23855042--23855176	65	2.1	64	80	4	155	48	6	9	34	1.62
23861395--23861750	176	2.0	177	98	1	696	37	24	14	23	1.92
23863458--23863482	13	1.9	13	100	0	50	56	20	0	24	1.43
23864810--23864847	5	7.8	5	94	5	69	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23864807--23864879	10	7.3	10	75	17	53	49	2	2	45	1.31
23865021--23865067	5	9.6	5	90	4	78	57	2	0	40	1.11
23865021--23865099	10	7.9	10	76	16	56	51	3	2	41	1.33
23864810--23865242	220	2.0	220	98	0	832	36	13	6	44	1.68
23886295--23886327	11	2.8	12	86	4	50	33	3	12	51	1.54
23889252--23889298	19	2.5	20	86	6	62	59	8	2	29	1.39
23891707--23891760	26	2.1	26	96	0	99	24	22	29	24	1.99
23891666--23891796	67	1.9	68	84	4	176	25	18	27	28	1.98
23891733--23891881	42	3.6	41	80	7	156	22	16	25	34	1.95
23896340--23896368	13	2.2	13	100	0	58	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79