genome.fa.s7.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  26  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8981740--8981786	24	2.0	24	87	8	69	17	10	8	63	1.49
8982606--8982638	15	2.1	17	88	11	52	33	6	21	39	1.78
8983368--8983398	13	2.4	13	100	0	62	32	6	16	45	1.72
8985382--8985652	136	2.0	138	93	1	465	45	5	8	39	1.59
8988235--8988365	50	2.7	49	86	3	174	29	22	17	29	1.97
8988388--8988546	51	3.1	49	72	10	142	30	24	15	28	1.96
8988331--8988554	101	2.2	102	84	4	283	30	26	15	27	1.96
8988847--8988903	29	2.0	29	86	6	80	29	19	5	45	1.72
8995843--8996236	51	7.8	50	80	6	309	29	25	15	29	1.96
8995848--8996236	102	3.9	102	80	6	346	29	25	15	29	1.96
8996522--8996579	30	1.9	30	86	6	82	32	18	3	44	1.67
9019547--9019784	39	6.1	39	82	0	233	19	31	15	33	1.93
9019555--9019788	78	3.0	78	81	2	265	20	30	15	34	1.93
9019683--9019784	19	5.3	19	66	13	55	17	34	13	34	1.89
9019547--9019784	117	2.0	117	84	3	309	19	31	15	33	1.93
9029814--9029947	53	2.6	51	80	7	162	32	14	14	38	1.86
9032169--9032224	17	3.2	17	76	2	58	16	37	28	17	1.91
9035651--9035747	49	2.0	49	95	0	176	28	22	4	44	1.71
9037131--9037411	50	5.6	50	82	4	316	20	29	22	27	1.99
9037082--9037411	100	3.3	101	79	6	336	21	28	21	28	1.99
9043394--9043572	54	3.3	53	91	3	277	41	16	12	29	1.85
9043467--9043551	19	4.6	19	70	14	79	43	15	12	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9046055--9046110	25	2.4	22	75	16	58	21	10	48	19	1.79
9046061--9046114	25	2.2	25	93	0	90	22	9	48	20	1.78
9051390--9051424	15	2.3	15	100	0	70	48	28	0	22	1.51
9051422--9051480	27	2.2	27	84	6	75	49	13	11	25	1.76
9052767--9052883	50	2.3	49	82	8	128	36	13	16	33	1.88
9067747--9067783	15	2.5	15	90	0	56	2	8	2	86	0.76
9067754--9067795	17	2.4	17	81	18	59	4	9	4	80	0.99
9070907--9071036	49	2.6	50	85	3	165	28	22	29	20	1.98
9070970--9071091	49	2.5	50	82	4	149	30	21	25	22	1.99
9071301--9071339	20	2.0	20	90	10	62	56	5	23	15	1.59
9077690--9077744	16	3.7	15	75	13	51	45	3	0	50	1.19
9083405--9083686	41	6.8	40	77	7	249	35	25	17	21	1.95
9083356--9083637	84	3.3	84	85	2	377	34	25	19	20	1.96
9085108--9085160	3	17.7	3	76	0	52	32	1	5	60	1.31
9091906--9092132	44	5.2	44	67	8	129	24	26	25	23	2.00
9092026--9092250	45	5.1	44	67	8	118	29	25	24	20	1.99
9092054--9092264	43	4.8	43	67	8	111	27	27	25	19	1.99
9091848--9092382	264	2.0	264	85	2	727	27	26	24	21	1.99
9091850--9092312	88	5.3	88	88	3	664	27	26	23	21	1.99
9091850--9092369	176	3.0	176	84	3	661	27	27	24	21	1.99
9091860--9092379	88	5.9	88	84	4	509	26	27	24	21	1.99
9092350--9092724	44	8.7	44	84	4	494	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9092606--9092676	37	1.9	37	88	0	106	32	22	19	25	1.98
9094370--9094422	3	17.7	3	76	0	52	32	1	5	60	1.31
9094796--9094837	22	1.9	22	85	0	57	30	2	0	66	1.04
9097444--9097482	11	3.7	11	80	13	55	35	15	28	20	1.93
9097441--9097482	20	2.1	20	95	0	75	35	16	26	21	1.94
9100422--9100453	15	2.1	15	94	0	55	21	18	0	59	1.38
9111524--9111728	100	2.0	100	84	1	268	27	20	23	27	1.99
9111741--9112071	44	7.6	44	72	8	185	29	19	23	27	1.98
9113683--9113745	31	2.0	31	84	6	83	34	6	0	58	1.23
9122188--9122242	14	3.6	14	73	17	56	49	32	5	12	1.64
9122182--9122246	32	2.0	32	100	0	130	49	27	6	16	1.70
9125880--9125921	20	2.1	20	90	0	66	35	14	30	19	1.91
9127506--9127598	19	5.1	19	68	21	63	44	13	12	29	1.82
9129335--9129372	11	3.5	11	89	7	60	76	5	2	15	1.08
9129335--9129379	21	2.1	22	91	4	74	73	4	2	20	1.11
9130697--9130749	21	2.5	21	78	0	61	69	0	24	5	1.09
9130742--9130799	16	3.6	15	75	13	53	56	5	29	8	1.51
9130748--9130819	33	2.2	33	87	5	101	54	5	29	11	1.58
9130770--9130819	16	3.1	15	78	13	55	58	4	26	12	1.51
9136540--9136578	19	2.1	19	85	0	51	48	10	10	30	1.70
9136530--9136655	54	2.3	54	87	0	189	42	13	9	34	1.77
9140265--9140300	13	2.9	12	84	8	54	80	0	2	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9140267--9140301	18	1.9	18	88	0	52	80	0	2	17	0.84
9149596--9149906	30	10.4	30	73	8	188	38	12	25	23	1.90
9149622--9149912	60	4.9	60	75	7	286	39	12	25	23	1.89
9149595--9149912	119	2.7	120	80	7	319	38	12	26	23	1.90
9149618--9149906	90	3.2	87	75	12	246	39	12	24	23	1.89
9156094--9156123	12	2.5	12	94	0	51	23	40	30	6	1.80
9164751--9164901	42	3.6	42	85	0	203	23	34	21	20	1.97
9167690--9167789	26	3.8	26	84	5	112	40	23	21	16	1.91
9167966--9168151	27	7.0	27	79	5	182	19	19	18	42	1.89
9172102--9172147	23	2.0	23	86	0	65	13	26	0	60	1.32
9172200--9172246	21	2.2	21	81	7	51	14	19	4	61	1.49
9172147--9172246	48	2.2	45	82	12	114	12	22	2	64	1.37
9172643--9172684	15	2.9	14	80	19	59	16	11	35	35	1.86
9173296--9173340	23	2.0	23	90	0	72	26	13	4	55	1.57
9183571--9183613	21	2.1	21	86	4	61	25	13	39	20	1.90
9187585--9187626	22	1.9	22	95	0	75	45	14	9	30	1.77
9191467--9191499	17	1.9	17	93	0	57	57	15	12	15	1.65
9212892--9212921	15	1.9	16	93	6	53	23	16	0	60	1.36
9214835--9214882	10	4.7	10	80	12	53	33	0	2	64	1.05
9215055--9215084	15	2.0	15	93	0	51	43	0	6	50	1.28
9221343--9221376	15	2.3	15	94	0	59	29	11	26	32	1.92
9221659--9221710	22	2.4	22	96	0	95	19	17	46	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9224205--9224265	20	3.1	19	74	25	63	40	21	27	9	1.85
9230888--9231021	66	2.0	66	84	2	171	16	21	17	44	1.86
9237057--9237083	13	2.1	13	100	0	54	37	0	7	55	1.28
9237555--9237859	72	4.3	71	79	2	297	47	12	5	34	1.64
9237555--9237859	143	2.1	145	78	4	332	47	12	5	34	1.64
9237680--9237859	71	2.5	70	87	4	202	48	11	4	35	1.59
9238254--9238298	23	2.0	23	90	0	72	42	15	20	22	1.89
9239870--9239918	22	2.3	23	82	13	68	63	12	2	22	1.39
9240043--9240106	25	2.6	24	78	7	74	26	10	45	17	1.81
9240299--9240378	40	2.0	41	87	2	117	18	27	15	38	1.91
9240301--9240389	40	2.2	40	81	2	106	19	24	14	41	1.89
9242059--9242107	17	2.9	17	81	6	55	77	6	4	12	1.09
9242065--9242106	12	3.6	11	87	9	57	80	4	2	11	0.95
9242223--9242357	24	5.7	24	75	7	87	62	1	8	27	1.32
9242235--9242315	12	6.8	12	76	0	63	61	1	8	28	1.33
9242257--9242316	18	3.3	18	78	0	66	63	1	6	28	1.29
9242561--9242593	6	5.5	6	92	0	57	78	0	3	18	0.87
9242343--9242788	237	1.9	241	90	2	729	49	12	16	21	1.79
9252564--9252615	22	2.4	22	96	0	95	32	21	15	30	1.94
9255277--9255423	56	2.8	53	84	10	203	23	29	24	23	1.99
9262295--9262931	319	2.0	318	98	0	1238	34	13	15	36	1.87
9264423--9264588	40	4.2	40	88	0	224	30	16	30	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9267817--9267870	25	2.2	25	89	0	81	22	11	48	18	1.79
9269370--9269584	27	8.0	27	83	5	256	42	16	17	23	1.89
9269370--9269584	81	2.7	81	85	0	295	42	16	17	23	1.89
9269373--9269609	54	4.4	53	78	7	235	41	16	18	23	1.89
9269630--9269702	24	3.0	24	82	9	87	21	6	26	45	1.77
9269640--9269716	24	3.2	24	75	3	75	23	7	24	44	1.80
9274890--9275058	20	8.4	20	62	2	70	31	18	32	17	1.94
9274927--9275067	20	7.1	20	63	12	74	31	17	31	18	1.94
9274882--9275189	120	2.6	120	93	0	526	32	17	30	19	1.95
9274971--9275114	20	7.2	20	61	14	55	30	16	33	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79