genome.fa.s7.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  48  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16100699--16100746	20	2.4	19	80	10	51	41	0	12	45	1.42
16101835--16101926	30	3.1	29	75	6	85	32	16	20	30	1.95
16111774--16111892	60	2.0	60	91	0	193	30	40	9	20	1.83
16121186--16121337	48	3.1	50	62	27	126	42	8	9	40	1.67
16129049--16129567	172	3.0	172	97	0	966	31	13	18	36	1.89
16131827--16131945	19	6.2	19	92	3	193	37	10	15	36	1.81
16131828--16131945	59	2.0	59	94	0	209	38	10	14	37	1.80
16131827--16131945	40	3.1	40	93	4	201	37	10	15	36	1.81
16131829--16131981	19	7.7	19	84	11	143	35	9	14	40	1.78
16131939--16131981	22	1.9	23	95	4	79	32	4	13	48	1.63
16137732--16138018	44	6.7	43	73	13	198	28	20	21	28	1.98
16138792--16138907	19	6.0	19	91	4	187	37	10	14	37	1.81
16138793--16138907	59	1.9	59	94	0	203	38	10	13	37	1.80
16138792--16138907	40	3.0	40	93	5	195	37	10	14	37	1.81
16142135--16142196	26	2.4	25	86	2	88	40	6	1	51	1.37
16147034--16147133	42	2.4	41	79	1	110	22	37	19	22	1.95
16155496--16155569	31	2.4	31	84	2	87	37	13	2	45	1.58
16157635--16157672	18	2.0	20	85	10	53	44	0	2	52	1.14
16161543--16161731	96	2.0	96	86	2	263	34	18	12	34	1.89
16182389--16182429	16	2.6	16	92	3	66	60	0	31	7	1.24
16191788--16192165	44	8.1	44	70	15	242	32	19	20	28	1.97
16191750--16192216	142	3.3	142	95	0	844	32	18	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16191975--16192155	98	1.8	98	81	4	222	32	19	19	28	1.96
16192233--16192308	23	3.3	23	64	14	66	38	18	21	22	1.94
16192218--16192316	46	2.2	46	96	0	180	33	20	19	27	1.96
16192338--16192572	50	4.6	50	73	8	188	33	24	18	23	1.97
16194426--16194465	19	2.0	20	85	4	55	37	12	2	47	1.55
16200618--16200650	14	2.3	15	89	5	50	27	12	33	27	1.92
16200736--16200788	10	5.6	10	82	8	67	73	0	26	0	0.83
16200736--16200788	20	2.8	20	91	5	83	73	0	26	0	0.83
16201050--16201076	14	1.9	14	100	0	54	40	22	22	14	1.90
16201175--16201326	48	3.1	47	66	19	123	27	17	8	46	1.76
16201117--16201404	97	3.0	97	94	0	495	26	16	10	47	1.78
16201877--16201931	24	2.3	24	90	0	83	34	14	23	27	1.94
16202265--16202778	44	11.7	44	69	9	235	28	20	25	25	1.99
16202309--16202732	87	4.9	88	68	9	213	28	21	25	25	1.99
16202262--16202837	131	4.4	131	92	1	911	28	20	25	25	1.99
16202262--16202837	263	2.2	263	91	1	922	28	20	25	25	1.99
16203019--16203420	183	2.2	182	89	2	610	30	19	21	28	1.98
16202982--16203451	183	2.6	182	82	7	585	30	20	22	27	1.98
16204246--16204276	14	2.2	14	94	0	53	67	0	0	32	0.91
16205287--16205337	12	3.9	13	76	16	52	21	9	0	68	1.18
16211150--16211204	28	2.1	28	83	10	71	34	3	7	54	1.46
16213018--16213134	20	5.8	20	68	9	69	41	16	4	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16213110--16213147	20	1.9	20	88	0	58	42	15	5	36	1.70
16213242--16213279	20	1.9	20	88	0	58	36	15	5	42	1.70
16213349--16213431	20	4.2	20	68	11	53	43	10	3	42	1.57
16215953--16215995	16	2.6	17	82	10	54	55	0	25	18	1.42
16217934--16217988	29	1.9	29	85	3	76	21	3	30	43	1.70
16218055--16218135	42	1.9	42	80	9	94	24	2	24	48	1.64
16218069--16218135	21	3.2	20	77	10	62	28	1	19	50	1.56
16222196--16222231	16	2.2	16	90	0	54	77	8	0	13	0.98
16223600--16223639	19	2.0	20	85	4	55	37	12	2	47	1.55
16223816--16223847	15	2.0	17	88	11	50	28	0	9	62	1.26
16224040--16224071	15	2.0	17	88	11	50	28	0	9	62	1.26
16223787--16224239	224	2.0	225	99	0	899	24	7	16	50	1.71
16228490--16228534	21	2.0	23	83	8	58	44	8	2	44	1.47
16235575--16235614	19	2.1	19	100	0	80	32	27	10	30	1.89
16239996--16240349	44	8.0	44	85	6	477	30	12	23	34	1.91
16240320--16240377	28	2.1	28	100	0	116	25	13	17	43	1.86
16245213--16245262	23	2.2	22	82	10	57	34	14	4	48	1.62
16246728--16246761	15	2.1	17	89	10	54	70	0	23	5	1.09
16246719--16246790	21	3.4	21	72	12	58	70	0	20	8	1.12
16246748--16246793	10	4.4	11	78	8	51	73	0	17	8	1.07
16251729--16251874	79	1.8	79	86	5	215	34	19	21	23	1.97
16253285--16253366	40	2.0	42	85	4	114	23	26	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16253639--16254207	97	5.9	97	96	1	1006	40	17	1	40	1.61
16254287--16254367	40	2.0	42	85	4	112	24	25	25	23	2.00
16259391--16259431	21	2.0	20	90	4	64	41	0	4	53	1.22
16259898--16259924	6	4.5	6	100	0	54	37	0	29	33	1.58
16260133--16260181	22	2.3	22	82	10	57	18	10	28	42	1.83
16261692--16261749	28	2.1	28	87	3	82	67	5	0	27	1.12
16261773--16261835	28	2.4	25	82	12	74	71	1	4	22	1.13
16262934--16262973	16	2.4	17	87	4	55	2	12	37	47	1.55
16263231--16263782	44	12.7	44	71	13	326	26	23	21	28	1.99
16263243--16263782	217	2.5	218	92	0	902	26	23	21	28	1.99
16277817--16277858	17	2.5	17	88	0	57	2	16	38	42	1.61
16278911--16278963	27	2.0	27	92	0	88	26	16	13	43	1.85
16289232--16289358	63	2.0	64	92	1	211	29	18	11	40	1.86
16290243--16290275	14	2.3	15	89	5	50	27	12	33	27	1.92
16291479--16291976	44	11.3	43	65	7	221	26	26	24	22	2.00
16291465--16292280	264	3.1	263	85	0	1058	26	24	25	23	2.00
16292051--16292274	44	5.1	43	65	12	141	25	24	26	23	2.00
16291468--16292280	88	9.2	88	86	2	934	26	24	25	22	2.00
16292258--16292677	44	9.5	44	77	3	396	30	15	24	30	1.96
16292259--16292682	133	3.2	133	78	5	462	29	16	24	29	1.96
16292269--16292677	221	1.9	222	86	1	588	29	15	24	30	1.96
16294924--16294960	13	2.7	14	84	16	51	21	2	8	67	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16296122--16296173	21	2.5	21	87	0	77	30	32	9	26	1.89
16296506--16296589	30	2.9	30	80	3	100	39	21	11	27	1.88
16306371--16306659	89	3.3	89	73	12	308	28	25	19	27	1.99
16306362--16306745	173	2.2	173	92	0	633	28	24	19	28	1.98
16306459--16306740	84	3.3	84	73	12	302	29	25	19	25	1.98
16306218--16306917	217	3.2	216	82	7	714	28	23	19	28	1.98
16306362--16306834	173	2.7	173	85	6	532	28	24	18	28	1.98
16306505--16306964	217	2.1	217	91	0	733	28	23	19	28	1.98
16306219--16306962	390	1.9	390	93	0	1272	28	23	19	28	1.98
16306239--16306957	44	16.7	43	66	16	222	28	24	19	28	1.98
16319471--16319522	27	1.9	27	96	0	95	51	3	15	28	1.60
16322269--16322298	5	5.8	5	92	7	51	40	0	0	60	0.97
16322269--16322298	11	2.8	11	95	5	53	40	0	0	60	0.97
16327159--16327211	22	2.4	22	78	6	54	73	1	18	5	1.12
16333760--16333933	41	4.3	39	77	8	136	24	14	28	32	1.95
16333778--16333933	41	3.8	40	80	5	152	23	14	29	32	1.95
16333778--16333933	81	1.9	82	86	5	226	23	14	29	32	1.95
16334593--16334896	24	13.2	23	66	16	112	25	13	18	42	1.87
16334635--16334897	22	11.5	21	72	15	103	25	14	19	41	1.88
16334603--16334913	46	6.8	46	92	0	514	25	14	19	41	1.89
16352130--16352185	21	2.7	20	83	5	67	37	19	39	3	1.69
16352170--16352209	12	3.3	12	96	0	71	40	17	40	2	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16352628--16352936	42	7.4	42	79	7	265	27	20	20	31	1.97
16353008--16353050	22	2.0	22	90	0	68	48	27	13	9	1.73
16353300--16353328	2	14.5	2	100	0	58	51	0	0	48	1.00
16362044--16362484	70	6.3	70	79	3	467	33	22	17	27	1.96
16363680--16363708	14	2.1	14	100	0	58	37	20	20	20	1.94
16368865--16368959	25	3.8	25	94	1	156	24	24	22	29	1.99
16376316--16376426	49	2.4	45	78	6	132	27	16	9	47	1.76
16376338--16376437	49	2.0	49	84	3	130	30	14	12	44	1.81
16377292--16377373	42	2.0	42	85	0	110	37	15	24	21	1.93
16382351--16382408	11	5.2	11	78	17	66	22	34	0	43	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79