genome.fa.s7.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  32  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11012194--11012246	21	2.7	20	81	18	58	20	16	0	62	1.33
11013195--11013240	25	1.9	23	86	8	65	36	8	4	50	1.53
11014157--11014211	21	2.5	22	76	2	67	38	36	0	25	1.56
11014275--11014301	7	3.9	7	100	0	54	29	55	0	14	1.40
11014266--11014318	21	2.5	21	81	0	61	33	50	0	15	1.44
11014689--11014927	41	5.8	41	90	0	370	30	23	21	23	1.99
11014982--11015080	40	2.5	39	85	4	119	22	25	25	27	2.00
11015102--11015127	12	2.2	12	100	0	52	46	30	15	7	1.74
11015714--11015761	14	3.1	17	72	22	52	58	4	0	37	1.18
11015714--11015797	29	2.9	29	82	10	84	54	4	1	39	1.29
11017380--11017429	26	1.9	26	92	8	84	34	20	8	38	1.82
11019749--11019804	24	2.3	24	81	9	60	53	1	0	44	1.11
11019964--11019997	13	2.6	13	85	0	50	41	23	8	26	1.83
11026576--11026617	21	2.0	20	86	4	57	52	26	7	14	1.67
11032971--11033088	57	2.1	57	93	3	202	30	13	29	26	1.94
11037320--11037364	23	2.0	22	82	4	54	64	4	31	0	1.13
11048354--11048398	21	2.0	24	83	12	60	17	4	6	71	1.25
11054164--11054409	122	2.0	122	98	1	476	42	15	9	32	1.79
11057063--11057109	20	2.1	21	81	18	51	61	0	2	36	1.08
11058599--11058646	24	2.0	24	100	0	96	37	16	0	45	1.48
11063823--11063880	31	1.9	31	85	3	82	43	10	13	32	1.78
11065402--11065699	50	5.9	50	81	5	269	27	21	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11069284--11069540	27	9.6	27	81	2	232	42	18	15	23	1.88
11069288--11069535	81	3.1	81	83	3	284	43	18	14	24	1.86
11069288--11069540	54	4.7	54	80	4	260	43	18	14	23	1.87
11069737--11069832	26	3.7	26	85	0	120	17	20	22	38	1.93
11069760--11069833	26	2.8	26	91	0	121	14	22	25	36	1.93
11069939--11070061	30	4.2	29	79	7	124	22	23	24	29	1.99
11069940--11070052	60	1.9	59	83	5	147	21	23	24	30	1.99
11075112--11075239	40	3.2	39	80	8	134	33	20	24	21	1.97
11075130--11075263	40	3.4	39	82	4	137	36	20	21	20	1.95
11075299--11075610	41	7.7	41	90	2	452	19	23	27	28	1.98
11075299--11075607	40	7.6	40	90	3	449	19	23	27	29	1.98
11075300--11075610	81	3.8	81	91	3	455	19	23	27	28	1.99
11076268--11076300	14	2.3	15	94	5	59	30	0	33	36	1.58
11076466--11076536	33	2.2	33	89	0	106	21	0	42	36	1.53
11076472--11076544	26	2.8	26	82	11	87	23	0	41	35	1.55
11076466--11076549	33	2.6	33	83	3	91	25	0	38	36	1.56
11076410--11076707	127	2.5	122	83	8	362	26	1	29	42	1.64
11080175--11080213	20	2.0	20	100	0	78	35	7	20	35	1.81
11081806--11082055	43	5.9	42	83	6	283	24	19	26	29	1.98
11081791--11082050	86	3.0	86	81	5	314	25	19	26	28	1.99
11081796--11082049	128	2.0	129	87	3	370	25	18	26	29	1.98
11082745--11082946	101	2.0	101	84	3	264	37	20	14	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11086291--11086409	60	2.0	60	96	0	220	37	8	16	36	1.79
11086578--11086651	37	2.0	37	100	0	148	29	16	16	37	1.90
11086863--11087006	72	2.0	72	83	2	182	32	14	18	34	1.91
11092932--11092993	18	3.4	18	86	4	90	50	3	19	27	1.63
11095760--11095789	15	2.0	15	100	0	60	66	0	20	13	1.24
11106257--11106306	24	2.1	24	100	0	100	28	22	4	46	1.70
11110788--11110873	44	2.0	44	92	0	145	52	6	12	27	1.65
11111106--11111134	13	2.2	13	100	0	58	31	37	13	17	1.89
11112508--11112612	52	2.0	55	90	5	171	41	0	29	28	1.56
11112515--11112643	52	2.4	52	84	8	163	40	0	31	27	1.57
11113152--11113182	9	3.4	9	90	0	53	38	22	12	25	1.90
11121984--11122064	30	2.7	30	73	3	83	30	23	17	28	1.97
11132003--11132054	20	2.6	20	81	0	59	36	7	11	44	1.70
11134825--11135002	88	2.0	89	98	1	349	39	19	16	24	1.91
11140100--11140161	20	3.1	20	80	0	70	32	9	12	45	1.75
11148075--11148206	27	4.9	27	83	3	149	22	15	19	41	1.90
11152405--11152453	18	2.6	19	75	18	57	22	26	0	51	1.49
11157198--11157776	307	1.9	296	88	5	858	42	15	11	30	1.82
11160231--11160263	17	1.9	17	100	0	66	42	9	0	48	1.35
11161614--11161646	17	1.9	17	88	11	50	39	0	0	60	0.97
11161991--11162026	14	2.6	14	95	0	63	16	11	0	72	1.12
11165351--11165480	62	2.1	62	98	0	251	21	18	32	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11170875--11170908	12	3.1	11	91	8	52	61	0	0	38	0.96
11179855--11179892	19	2.0	19	100	0	76	47	5	5	42	1.48
11182850--11182906	28	2.0	28	100	0	114	35	7	22	35	1.82
11186226--11186423	110	1.8	110	94	0	351	28	15	20	35	1.93
11189892--11189959	8	8.4	8	84	12	86	77	10	0	11	0.98
11189892--11189954	17	3.7	18	78	17	73	79	9	0	11	0.94
11189890--11189959	25	2.8	25	81	12	90	78	10	0	11	0.96
11190310--11190535	112	2.0	113	97	0	427	32	15	23	29	1.95
11192538--11192567	13	2.3	13	88	0	51	70	0	16	13	1.18
11192530--11192570	7	6.0	7	85	5	57	70	0	14	14	1.16
11194020--11194069	25	2.0	25	84	0	64	36	20	18	26	1.95
11194145--11194194	25	2.0	25	84	0	64	36	20	18	26	1.95
11194270--11194319	25	2.0	25	84	0	64	36	20	18	26	1.95
11194395--11194444	25	2.0	25	84	0	64	36	20	18	26	1.95
11194520--11194569	25	2.0	25	84	0	64	36	20	18	26	1.95
11194645--11194694	25	2.0	25	84	0	64	36	20	18	26	1.95
11193920--11194782	125	6.9	125	99	0	1674	34	19	19	25	1.96
11195017--11196371	173	7.9	174	73	11	969	31	18	21	29	1.97
11195104--11195744	44	14.8	42	71	10	138	30	18	21	29	1.97
11195147--11195547	217	1.8	218	88	5	621	29	17	21	30	1.96
11195371--11195658	44	6.7	43	71	15	141	31	16	21	30	1.95
11195365--11195698	129	2.6	128	91	2	515	30	17	21	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11195019--11196391	129	10.7	127	79	9	422	31	18	21	29	1.97
11195709--11196792	129	8.5	129	92	1	1576	31	17	21	29	1.96
11196438--11196629	44	4.5	41	71	15	122	31	17	20	31	1.95
11197705--11197729	7	3.6	7	100	0	50	12	0	0	88	0.53
11202796--11202820	6	4.2	6	100	0	50	0	52	16	32	1.44
11203652--11203677	12	2.2	12	100	0	52	0	11	30	57	1.34
11203671--11203749	39	2.0	39	85	0	104	16	26	22	34	1.95
11202825--11203993	399	2.9	401	89	3	1776	29	20	15	33	1.94
11206644--11206679	2	18.0	2	94	0	63	50	0	2	47	1.15
11215588--11215651	13	4.9	13	94	0	110	39	26	9	25	1.86
11216385--11216426	16	2.6	17	85	11	61	64	4	0	30	1.14
11225143--11225205	30	2.1	30	90	0	99	26	9	36	26	1.87
11233886--11233940	16	3.4	16	70	22	51	10	23	1	63	1.36
11233866--11233963	33	2.9	33	93	1	160	11	27	4	57	1.52
11233866--11233957	18	5.4	18	71	23	92	10	26	3	59	1.46
11234006--11234065	6	10.7	6	82	10	56	10	13	0	76	1.01
11234018--11234066	16	3.1	16	85	8	64	12	10	0	77	0.99
11234647--11234680	17	2.0	17	88	11	52	76	0	2	20	0.92
11241527--11241564	16	2.3	17	95	4	69	42	10	0	47	1.38
11248430--11248645	115	1.9	114	82	4	274	32	17	18	31	1.94
11254309--11254357	19	2.5	19	86	3	62	38	36	6	18	1.76
11254813--11255165	108	3.3	107	92	2	568	33	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11255678--11255741	29	2.3	28	82	12	78	75	3	6	15	1.14
11255933--11256333	200	2.0	201	99	0	795	43	6	6	42	1.58
11263565--11263632	19	3.7	19	79	9	61	57	7	0	35	1.27
11266643--11266677	17	2.0	18	88	5	54	0	14	2	82	0.77
11267454--11267506	27	2.0	25	85	7	70	58	9	11	20	1.60
11267699--11267736	8	4.8	8	81	12	51	71	0	2	26	1.00
11283919--11283973	20	2.7	20	86	8	67	40	18	10	30	1.85
11285104--11285152	20	2.4	20	86	3	62	51	8	8	32	1.61
11286939--11286998	30	2.0	30	84	9	79	35	10	8	46	1.67
11288293--11288458	80	2.1	81	98	1	325	48	12	7	31	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79