genome.fa.s7.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  69  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22788508--22788553	23	2.0	23	91	0	74	32	6	19	41	1.77
22790730--22790762	14	2.4	14	95	5	59	24	24	9	42	1.83
22791045--22791082	17	2.2	17	86	9	51	34	13	2	50	1.55
22799789--22799886	29	3.5	29	78	10	89	39	25	14	20	1.90
22802856--22802946	47	1.9	48	82	8	116	14	13	14	58	1.64
22815275--22815311	17	2.2	17	90	0	56	21	2	0	75	0.92
22820931--22821061	28	4.9	26	78	3	109	28	16	23	32	1.96
22820983--22821193	28	7.6	28	81	1	235	25	14	25	35	1.94
22820925--22821198	84	3.3	84	83	4	319	27	14	23	35	1.93
22824548--22824645	23	4.2	23	77	2	79	19	19	22	38	1.93
22829035--22829091	19	2.7	22	84	10	66	36	8	15	38	1.79
22830692--22830725	18	1.9	18	94	5	61	58	8	2	29	1.43
22831788--22831856	31	2.3	31	82	7	79	46	21	10	21	1.81
22834028--22834076	22	2.5	20	81	18	66	26	0	0	73	0.83
22842132--22842171	16	2.5	16	91	0	62	50	2	22	25	1.62
22842147--22842243	44	2.2	44	81	10	117	35	4	23	37	1.74
22843793--22843854	29	2.2	28	82	2	70	24	11	14	50	1.75
22845284--22845315	7	4.6	7	100	0	64	28	0	12	59	1.34
22847817--22848033	29	7.4	29	87	7	312	42	26	0	29	1.61
22847817--22848033	59	3.7	59	84	10	300	42	26	0	29	1.61
22848375--22848399	10	2.5	10	100	0	50	44	8	0	48	1.32
22853510--22853539	16	1.9	15	93	6	51	13	10	16	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22861882--22862019	43	3.2	43	71	20	117	38	7	2	52	1.41
22863553--22863582	15	1.9	16	93	6	53	40	6	10	43	1.64
22864943--22865122	88	2.0	89	91	1	290	35	11	20	33	1.88
22866066--22866133	20	3.4	20	80	8	75	36	5	16	41	1.72
22866106--22866143	20	1.9	20	88	0	58	34	2	13	50	1.55
22866639--22866674	17	2.2	16	90	5	54	27	0	2	69	1.02
22867062--22867095	11	3.1	11	82	0	50	20	32	2	44	1.67
22867062--22867111	22	2.3	22	89	6	75	24	32	2	42	1.66
22867190--22867214	9	2.8	9	100	0	50	24	0	0	76	0.80
22869514--22869553	7	5.9	7	85	14	57	47	0	0	52	1.00
22869612--22869745	15	8.2	15	67	22	74	44	32	0	21	1.58
22869560--22869855	101	3.2	86	77	16	272	45	34	1	18	1.57
22869609--22869831	101	2.2	101	94	0	383	44	34	1	20	1.60
22890152--22890250	6	15.5	6	72	19	67	39	39	0	21	1.53
22890130--22890324	27	7.1	27	75	19	131	42	33	0	24	1.55
22890185--22890272	45	2.0	45	93	4	151	38	38	0	22	1.55
22890130--22890244	33	3.5	33	96	1	205	40	37	0	22	1.54
22890230--22890366	27	4.7	33	64	27	78	43	33	0	22	1.59
22890152--22890305	72	2.1	74	87	7	222	40	36	0	22	1.54
22890152--22890305	78	2.1	75	89	7	233	40	36	0	22	1.54
22890236--22890358	54	2.3	53	83	10	144	44	31	0	22	1.59
22890343--22890374	6	5.3	6	100	0	64	37	46	0	15	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22890323--22890374	18	2.9	18	85	0	59	44	38	1	15	1.58
22890606--22890647	16	2.6	16	96	0	75	45	4	2	47	1.36
22890621--22890671	22	2.3	23	89	3	77	45	1	1	50	1.24
22891707--22891823	18	7.0	18	67	19	56	30	11	1	56	1.44
22892631--22892673	19	2.3	19	92	8	70	46	11	16	25	1.80
22897721--22897784	10	6.3	11	74	17	50	20	0	37	42	1.52
22897079--22897740	29	22.8	29	98	0	1225	21	0	31	47	1.51
22897756--22897781	5	5.2	5	100	0	52	19	0	42	38	1.51
22897847--22897895	25	1.9	26	91	4	82	38	14	4	42	1.64
22898804--22898828	7	3.6	7	100	0	50	60	12	0	28	1.32
22899616--22899688	25	3.1	25	70	20	59	64	4	0	31	1.12
22899761--22899825	31	2.1	31	94	0	112	66	0	0	33	0.92
22904040--22904570	263	2.0	264	99	0	1055	40	13	12	34	1.81
22905831--22905868	20	1.9	20	94	0	67	21	15	23	39	1.92
22919190--22919244	26	2.2	25	87	6	76	49	3	0	47	1.19
22919744--22919773	6	5.0	6	100	0	60	33	50	0	16	1.46
22924797--22924840	17	2.5	17	81	3	52	50	2	0	47	1.13
22927167--22927365	106	1.9	106	97	2	373	39	8	9	43	1.66
22927506--22927552	21	2.2	22	84	3	60	34	0	2	63	1.06
22928532--22928571	14	2.9	14	88	3	55	45	0	0	55	0.99
22932281--22932320	20	2.0	21	85	5	55	75	2	17	5	1.10
22943752--22943806	20	2.8	20	85	0	74	41	10	10	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22949477--22949506	16	1.9	16	93	6	53	50	20	0	30	1.49
22960702--22960841	43	3.3	43	80	6	158	28	22	17	31	1.97
22971652--22971704	6	8.3	6	82	15	54	77	0	22	0	0.77
22971656--22971704	25	2.0	25	88	8	73	75	0	24	0	0.80
22976253--22976305	25	2.1	25	89	6	81	41	9	13	35	1.76
22976862--22976960	45	2.2	45	87	1	135	21	5	21	52	1.65
22977774--22977886	56	2.0	56	91	0	181	26	7	13	52	1.67
22978995--22979037	21	2.0	21	100	0	86	53	9	9	27	1.63
22984986--22985042	8	6.6	8	80	11	51	61	7	1	29	1.32
22984988--22985042	28	2.0	27	85	3	74	60	7	1	30	1.35
22988180--22988622	114	3.9	113	91	2	681	24	21	27	26	1.99
22988831--22988881	24	2.1	24	89	7	77	21	0	45	33	1.52
22988854--22988896	16	2.9	15	86	6	61	23	0	51	25	1.49
22988818--22988918	7	13.2	8	72	17	81	20	0	44	34	1.52
22989618--22989647	15	2.0	15	93	0	51	23	23	40	13	1.90
22991402--22991517	18	5.6	21	73	23	79	43	12	0	44	1.41
22991406--22991496	18	4.9	18	79	15	105	45	12	0	42	1.41
22991406--22991521	39	3.0	38	87	12	157	44	11	0	43	1.39
22991783--22991825	18	2.4	18	80	0	50	30	0	6	62	1.21
22992131--22992454	16	20.5	16	73	19	161	50	17	0	31	1.48
22992093--22992439	69	5.3	67	74	20	235	50	17	0	31	1.50
22992110--22992314	21	9.6	21	74	17	106	51	16	0	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22992281--22992443	9	19.3	9	74	18	120	49	19	0	31	1.48
22994059--22994338	42	6.7	42	87	0	400	33	21	21	23	1.97
22994309--22994427	42	2.8	42	89	0	184	23	22	20	33	1.97
23000437--23000491	20	2.8	19	83	8	65	54	0	1	43	1.10
23000451--23000491	20	2.0	20	95	0	73	56	0	0	43	0.99
23000453--23000493	9	4.3	9	82	11	55	60	0	0	39	0.96
23000453--23000499	20	2.3	20	88	3	67	63	0	0	36	0.94
23001137--23001182	22	2.1	21	84	4	56	36	0	2	60	1.09
23002321--23002402	42	2.0	42	82	0	101	14	32	25	26	1.95
23012594--23012632	5	7.6	5	85	5	51	76	15	5	2	1.06
23012819--23012887	30	2.3	30	79	0	75	33	13	26	27	1.93
23013287--23013329	21	2.1	20	82	4	50	18	27	2	51	1.59
23016094--23016120	6	4.5	6	100	0	54	70	29	0	0	0.88
23016484--23016850	183	2.0	184	99	0	727	40	4	11	42	1.63
23023220--23023261	22	2.0	20	82	13	50	45	2	4	47	1.36
23028142--23028303	44	3.7	44	96	0	288	27	22	23	27	1.99
23028137--23028778	44	14.7	42	75	10	264	29	19	22	28	1.98
23028274--23028565	131	2.2	131	98	0	566	29	17	22	30	1.96
23028126--23028599	131	3.6	130	82	8	498	29	18	21	29	1.97
23028405--23028732	174	1.9	174	91	1	541	30	18	22	29	1.97
23028656--23028825	92	1.8	92	87	2	252	28	22	23	25	1.99
23028656--23028797	46	3.1	46	98	0	275	30	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23028801--23028984	100	1.8	100	85	0	260	29	22	22	25	1.99
23032097--23032182	43	2.0	43	90	4	138	53	1	22	23	1.53
23041172--23041217	24	1.9	24	100	0	92	36	4	21	36	1.74
23048597--23048655	29	2.0	29	100	0	118	37	10	22	30	1.87
23053798--23053892	28	3.4	27	78	15	113	40	9	28	22	1.85
23059069--23059132	30	2.1	30	94	0	110	40	4	31	23	1.75
23066651--23066741	6	17.2	5	76	15	60	75	4	0	19	0.96
23066654--23066728	6	12.5	6	77	13	66	76	4	0	20	0.95
23068189--23068220	16	2.1	15	94	5	55	75	0	12	12	1.06
23073030--23073119	44	2.0	44	100	0	180	36	17	14	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79