genome.fa.s7.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  51  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17220829--17220865	16	2.3	17	81	13	51	43	5	0	51	1.24
17232642--17232676	13	2.7	13	90	0	61	22	0	0	77	0.78
17232642--17232675	6	5.3	6	86	13	50	20	0	0	79	0.73
17235596--17235666	22	3.3	22	78	4	90	40	0	4	54	1.20
17236419--17236448	5	5.8	5	96	4	51	16	83	0	0	0.65
17240116--17240243	42	3.0	42	100	0	256	35	16	9	39	1.81
17242733--17242772	20	2.0	20	85	0	53	30	7	20	42	1.79
17246236--17247001	277	2.8	277	89	2	1151	35	16	20	27	1.94
17249062--17249095	17	2.0	17	88	0	50	55	5	14	23	1.61
17256026--17256096	3	24.0	3	97	2	135	0	33	0	66	0.92
17256450--17256532	27	3.1	27	77	3	87	19	24	33	22	1.97
17257776--17257844	27	2.6	27	72	4	68	21	33	21	23	1.97
17258610--17258664	27	2.0	27	96	0	101	21	20	10	47	1.80
17261036--17261264	113	2.0	114	99	0	451	44	15	7	32	1.76
17262771--17262895	64	2.0	64	91	0	205	30	36	12	21	1.90
17264423--17264465	18	2.4	18	88	0	59	41	44	2	11	1.53
17264569--17264644	9	8.4	9	86	0	107	25	10	22	42	1.85
17264569--17264645	27	2.9	27	92	0	127	24	10	22	42	1.84
17266205--17266233	2	14.5	2	100	0	58	51	0	0	48	1.00
17269405--17269470	33	2.0	33	100	0	132	27	21	18	33	1.96
17276741--17276783	21	2.0	21	100	0	86	27	13	13	44	1.83
17289184--17289243	29	2.0	30	81	9	70	40	0	5	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17289365--17289392	4	7.0	4	100	0	56	50	0	0	50	1.00
17303084--17303137	28	2.0	28	88	3	83	44	5	0	50	1.25
17304468--17304506	20	1.9	21	84	5	53	43	2	12	41	1.56
17311194--17311250	30	1.9	30	92	0	96	29	17	19	33	1.95
17311728--17311894	81	2.0	82	98	1	327	31	13	10	44	1.77
17314611--17314947	51	6.7	50	76	7	306	29	25	16	28	1.97
17314605--17314947	102	3.4	102	86	3	426	29	25	16	28	1.97
17314604--17314947	153	2.3	148	78	6	361	29	25	16	29	1.96
17319789--17319931	43	3.3	42	83	4	178	27	20	30	22	1.98
17320003--17320045	22	2.0	22	85	0	59	41	25	18	13	1.88
17328171--17328267	38	2.5	39	81	11	119	42	22	16	18	1.89
17332828--17332970	43	3.3	43	85	0	187	27	19	30	22	1.98
17335515--17335540	13	2.0	13	100	0	52	23	15	7	53	1.67
17345978--17346222	43	5.7	42	76	3	172	25	16	30	27	1.96
17346294--17346336	22	2.0	22	90	0	68	41	27	18	11	1.85
17346616--17346910	51	5.8	51	78	6	296	29	26	14	29	1.95
17346616--17346910	102	2.9	102	88	0	403	29	26	14	29	1.95
17346617--17346906	153	1.9	151	81	6	352	30	26	14	28	1.95
17347379--17347439	30	2.0	31	84	6	81	32	18	6	42	1.76
17348615--17348672	23	2.6	23	83	2	73	17	24	13	44	1.85
17351324--17351349	12	2.2	12	100	0	52	30	15	7	46	1.74
17352469--17352493	12	2.1	12	100	0	50	16	32	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17361434--17361474	21	1.9	22	85	5	57	26	2	2	68	1.15
17362675--17362776	26	3.9	26	92	3	152	36	20	25	17	1.94
17367253--17367312	16	3.5	16	68	24	50	6	23	3	66	1.30
17367279--17367332	18	2.9	19	69	20	60	9	27	1	61	1.37
17367259--17367332	36	2.1	36	97	0	139	8	25	2	63	1.35
17374508--17374563	30	1.9	28	82	13	69	60	10	14	14	1.58
17378808--17378864	25	2.3	26	81	9	73	22	26	15	35	1.94
17379037--17379088	26	2.0	26	85	7	70	40	5	17	36	1.73
17385080--17385178	46	2.2	43	81	12	110	24	20	24	31	1.98
17395094--17395133	16	2.4	17	87	4	55	42	5	0	52	1.23
17405323--17405397	36	2.1	37	87	2	107	36	4	2	57	1.32
17415005--17415043	20	2.0	20	89	0	60	23	10	10	56	1.63
17415149--17415221	36	2.0	36	89	0	110	35	15	19	30	1.92
17415912--17415968	20	3.0	20	75	17	66	43	17	8	29	1.79
17415933--17415985	18	2.8	20	77	5	56	43	16	5	33	1.72
17415913--17415985	38	1.9	38	91	0	119	43	16	6	32	1.74
17415969--17416006	20	1.9	20	88	0	58	42	7	2	47	1.46
17416328--17416426	50	2.0	50	83	0	126	43	12	14	30	1.81
17416488--17416545	29	2.0	29	89	0	89	36	32	6	24	1.82
17420620--17420683	30	2.1	30	85	0	83	32	23	23	20	1.98
17421523--17421595	29	2.5	29	95	0	128	45	13	9	31	1.76
17422120--17422195	26	2.9	26	80	0	80	39	22	21	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17422376--17422735	27	13.3	26	77	10	194	18	19	20	42	1.89
17422376--17422735	54	6.7	53	82	2	387	18	19	20	42	1.89
17422376--17422735	81	4.4	81	83	2	429	18	19	20	42	1.89
17493716--17493751	15	2.4	15	90	0	54	30	16	0	52	1.44
17495439--17495487	22	2.1	23	92	7	82	30	20	4	44	1.70
17498047--17498103	23	2.4	23	91	2	96	54	8	0	36	1.32
17502763--17502978	86	2.5	86	86	2	283	30	16	22	30	1.96
17502768--17502988	43	5.1	44	80	4	238	29	16	22	31	1.96
17515425--17515463	20	2.0	20	100	0	78	20	12	10	56	1.65
17516082--17516144	12	5.4	12	71	22	55	47	0	3	49	1.17
17516082--17516144	22	2.7	23	77	20	69	47	0	3	49	1.17
17516107--17516243	61	2.3	57	82	6	157	44	1	3	50	1.28
17516209--17516260	25	2.0	26	88	3	79	53	7	0	38	1.30
17519822--17519851	15	2.0	15	93	0	51	23	6	6	63	1.43
17527199--17528173	88	11.2	88	89	2	1303	24	24	23	27	2.00
17529248--17529294	21	2.2	21	88	0	67	23	38	12	25	1.90
17532363--17532427	19	3.4	19	85	10	80	44	12	20	23	1.84
17532377--17532424	20	2.5	19	90	10	71	43	12	20	22	1.86
17537495--17537532	18	2.1	18	90	0	58	55	0	7	36	1.29
17538257--17538303	21	2.2	22	77	11	53	63	12	14	8	1.50
17547245--17547280	15	2.4	15	90	0	54	30	16	0	52	1.44
17550100--17550134	15	2.4	15	90	4	54	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17554119--17554188	4	16.5	4	77	21	56	22	1	0	75	0.88
17554111--17554196	17	5.1	17	71	16	72	22	2	0	75	0.91
17554112--17554181	5	13.4	5	78	13	70	21	1	0	77	0.85
17554112--17554188	31	2.4	32	84	6	111	22	1	0	76	0.86
17554120--17554196	36	2.2	35	86	6	102	23	2	0	74	0.95
17554343--17554402	22	2.8	21	79	5	57	25	46	10	18	1.79
17555341--17555531	101	1.9	101	84	4	260	26	16	25	31	1.96
17557494--17557554	30	2.0	31	90	9	99	45	6	21	26	1.76
17560141--17560182	21	2.0	21	95	0	75	30	4	26	38	1.77
17562118--17562181	30	2.1	31	94	2	112	42	6	25	26	1.78
17562116--17562165	15	3.2	16	72	11	59	44	6	24	26	1.76
17563603--17563655	13	4.1	13	75	7	54	35	20	3	39	1.71
17563769--17563802	18	1.9	17	88	5	50	50	0	2	47	1.16
17567867--17567939	29	2.5	29	93	0	119	52	9	12	26	1.69
17569490--17569565	9	8.4	9	92	0	116	23	9	25	42	1.83
17569490--17569565	27	2.8	27	93	0	134	23	9	25	42	1.83
17577015--17577065	19	2.6	20	79	14	61	27	1	7	62	1.33
17577849--17577899	19	2.6	20	79	14	61	27	1	7	62	1.33
17576863--17578532	834	2.0	834	100	0	3340	36	9	10	44	1.71
17578597--17578626	16	1.9	15	93	6	51	83	0	16	0	0.65
17580176--17580205	16	1.9	15	93	6	51	83	0	16	0	0.65
17588581--17588613	16	1.9	18	88	11	52	33	0	9	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17588933--17589777	308	2.7	306	79	8	849	35	14	10	39	1.81
17590814--17590854	21	2.0	21	90	0	64	48	21	12	17	1.79
17597969--17598002	16	2.1	17	94	5	61	52	0	38	8	1.33
17599721--17599757	19	1.9	19	88	0	56	59	10	0	29	1.31
17602973--17603006	16	2.1	17	88	5	52	41	2	0	55	1.15
17608330--17608354	12	2.1	12	100	0	50	36	8	16	40	1.77
17616749--17616835	9	10.0	9	69	9	56	34	3	18	43	1.67
17616780--17616835	26	2.2	25	90	3	85	32	3	21	42	1.70
17617246--17617311	33	2.0	33	90	0	105	33	6	16	43	1.73
17617980--17618006	12	2.2	12	100	0	54	51	25	7	14	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79