genome.fa.s7.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  55  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18384985--18385207	43	5.2	43	86	3	290	31	29	17	21	1.96
18384985--18385212	86	2.7	86	88	4	320	32	29	16	21	1.96
18386573--18386610	15	2.4	16	83	16	53	39	42	0	18	1.50
18386584--18386612	15	1.9	15	100	0	58	34	44	0	20	1.52
18386592--18386632	21	1.9	22	85	5	57	39	36	0	24	1.56
18386894--18386951	22	2.6	22	77	20	59	36	34	0	29	1.58
18386974--18387014	22	1.9	21	85	5	55	36	31	0	31	1.58
18386945--18387022	21	3.7	21	77	6	59	35	38	0	25	1.56
18387034--18387425	193	2.0	194	93	3	664	47	12	3	36	1.59
18387556--18387673	41	2.9	41	92	2	193	25	33	20	21	1.97
18389072--18389878	125	6.5	125	83	3	961	23	22	17	36	1.95
18389072--18389878	246	3.3	245	84	5	993	23	22	17	36	1.95
18389064--18389862	371	2.2	372	89	0	1208	23	21	17	36	1.95
18389815--18389906	40	2.3	40	83	1	114	18	23	18	39	1.92
18390706--18390836	21	6.1	21	74	11	104	51	29	0	19	1.46
18390702--18390836	7	19.0	7	71	5	74	50	30	0	19	1.48
18390862--18391014	41	3.7	41	84	6	141	23	24	16	35	1.94
18392593--18392629	17	2.2	17	95	0	65	35	2	5	56	1.36
18395211--18395276	34	1.9	34	93	6	116	31	12	10	45	1.76
18399446--18399499	5	10.6	5	80	4	54	18	7	0	74	1.05
18408523--18408551	14	2.1	14	100	0	58	20	6	37	34	1.80
18413558--18413582	12	2.1	12	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18415135--18415186	26	2.0	26	100	0	104	7	11	19	61	1.53
18419700--18419809	33	3.3	33	68	12	89	31	17	24	26	1.97
18419700--18419877	68	2.6	68	86	3	225	30	15	24	28	1.96
18423549--18423711	43	3.8	42	78	4	157	31	25	16	26	1.96
18427358--18427518	33	4.8	32	73	8	133	30	14	25	29	1.95
18427291--18427530	101	2.4	101	92	0	390	30	14	25	30	1.95
18432461--18432536	25	3.0	25	78	3	73	19	23	18	38	1.93
18432471--18432540	25	2.8	25	80	4	79	17	24	20	38	1.93
18432542--18432627	25	3.5	25	74	13	70	19	29	19	31	1.97
18432610--18432690	25	3.3	24	70	11	65	17	27	20	34	1.95
18432633--18432689	25	2.3	25	84	0	69	17	28	19	35	1.94
18435785--18435897	50	2.3	50	80	0	127	29	23	26	21	1.99
18436170--18436208	20	2.0	20	90	10	62	56	5	23	15	1.59
18436459--18436491	17	1.9	17	100	0	66	42	6	27	24	1.78
18440901--18440951	17	2.9	17	94	2	84	39	7	27	25	1.83
18443225--18443504	146	1.9	146	100	0	560	33	13	13	38	1.85
18463881--18463967	43	2.0	43	95	0	156	25	22	18	33	1.97
18468768--18468810	22	1.9	23	86	13	63	55	0	6	37	1.27
18470080--18470150	13	5.4	12	72	21	54	40	1	1	56	1.17
18483738--18483766	2	14.5	2	100	0	58	51	48	0	0	1.00
18485319--18485370	3	17.3	3	91	0	86	0	30	0	69	0.89
18490969--18490994	12	2.2	12	100	0	52	38	46	7	7	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18492198--18492242	23	2.0	23	95	0	81	40	22	8	28	1.84
18495773--18495817	6	7.3	6	90	5	72	15	20	0	64	1.29
18495857--18495886	6	5.0	6	91	0	51	13	20	0	66	1.24
18503766--18503794	2	15.0	2	92	7	51	48	0	0	51	1.00
18505218--18505270	20	2.7	19	80	8	61	28	5	5	60	1.42
18505209--18505273	20	3.5	17	70	25	51	27	4	4	63	1.34
18505601--18505627	13	2.1	13	100	0	54	14	37	14	33	1.88
18505652--18505681	6	5.0	6	100	0	60	16	0	16	66	1.25
18508699--18508723	13	1.9	13	100	0	50	32	0	20	48	1.50
18511702--18511788	43	2.0	44	97	2	167	27	22	31	18	1.97
18515549--18515575	13	2.1	13	100	0	54	11	0	14	74	1.08
18526060--18526119	16	3.8	16	78	8	59	70	0	5	25	1.08
18526893--18526940	24	2.0	24	88	8	71	12	14	8	64	1.49
18526906--18526942	12	3.1	12	96	0	65	10	16	8	64	1.47
18527428--18527498	10	6.7	10	73	12	52	63	1	2	32	1.18
18527428--18527485	11	5.1	11	76	13	55	63	0	3	32	1.11
18527431--18527480	25	2.1	24	88	7	75	70	0	4	26	1.05
18530080--18530128	15	3.3	15	78	16	57	63	2	2	32	1.17
18530080--18530133	7	7.2	8	78	19	55	62	1	1	33	1.16
18530061--18530133	34	2.2	34	79	15	82	63	2	2	31	1.23
18531692--18531779	44	2.0	44	84	2	113	25	27	19	28	1.99
18544855--18544903	15	3.3	15	78	16	57	63	2	2	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18544855--18544908	7	7.2	8	78	19	55	62	1	1	33	1.16
18544836--18544908	34	2.2	34	79	15	82	63	2	2	31	1.23
18554102--18554164	30	2.1	29	91	2	99	39	1	6	52	1.37
18554805--18554840	18	2.1	18	89	5	56	41	0	25	33	1.55
18567004--18567174	86	2.0	86	90	0	270	36	5	11	46	1.63
18572898--18572953	27	2.1	27	100	0	112	32	3	10	53	1.53
18582896--18582924	13	2.3	13	94	5	51	48	0	20	31	1.50
18583412--18583576	21	8.0	21	69	12	90	16	21	19	42	1.89
18583433--18583611	81	2.2	80	85	2	232	16	21	20	40	1.91
18588632--18588684	25	2.2	24	86	3	70	39	22	20	16	1.92
18594970--18595064	25	3.9	25	75	8	88	37	23	22	16	1.93
18595041--18595166	64	2.0	64	80	0	144	34	20	20	24	1.97
18611947--18612096	81	1.9	81	87	2	221	33	22	17	26	1.96
18614266--18614292	13	2.1	13	100	0	54	48	0	22	29	1.51
18618979--18619043	27	2.4	27	94	0	112	40	3	4	52	1.38
18619120--18619191	33	2.0	33	84	12	90	45	6	16	30	1.74
18626430--18626483	21	2.6	21	85	14	76	22	5	1	70	1.18
18626438--18626483	20	2.2	20	88	11	67	19	4	2	73	1.10
18626436--18626474	10	3.8	10	82	3	51	20	2	2	74	1.06
18626430--18626483	11	5.1	11	77	8	58	22	5	1	70	1.18
18628766--18629073	43	7.3	43	91	2	462	25	25	18	30	1.98
18628766--18629073	126	2.4	125	89	4	454	25	25	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18634818--18634929	9	12.4	9	71	11	68	29	0	18	50	1.53
18634925--18634965	12	3.4	12	82	0	55	24	2	21	51	1.60
18634917--18634965	24	2.0	24	88	0	71	28	2	18	51	1.58
18635048--18635254	43	5.0	41	72	17	167	32	1	21	43	1.62
18635035--18635281	123	2.0	124	98	0	478	33	1	20	44	1.61
18635310--18635390	9	9.0	9	73	15	69	38	1	16	44	1.55
18635314--18635392	16	5.0	16	76	14	83	39	1	15	44	1.54
18636919--18636977	6	9.3	6	85	14	75	67	13	3	15	1.35
18636919--18636981	13	4.9	13	84	7	85	68	12	3	15	1.33
18638672--18638696	6	4.2	6	100	0	50	48	16	0	36	1.46
18639687--18639748	31	2.0	32	87	3	90	56	16	0	27	1.40
18640176--18640352	41	4.3	41	85	1	203	37	28	18	15	1.91
18642967--18643101	42	3.2	42	87	0	189	22	22	37	17	1.94
18645933--18645993	29	2.1	29	81	9	70	55	6	9	27	1.57
18647249--18647374	43	2.9	43	75	9	130	19	20	28	30	1.97
18654000--18654110	40	2.8	40	82	5	127	36	25	19	18	1.95
18654176--18654494	41	7.8	40	82	2	341	24	20	25	29	1.99
18654177--18654494	123	2.6	121	84	3	402	24	20	25	29	1.99
18654748--18654803	29	1.9	29	81	0	67	26	3	35	33	1.74
18654804--18654958	82	1.9	82	85	6	217	28	1	26	43	1.63
18655092--18655134	21	2.0	21	90	0	68	27	0	39	32	1.57
18659999--18660258	43	6.1	44	78	11	184	26	19	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18660037--18660259	85	2.6	84	80	7	252	26	20	26	27	1.99
18659999--18660261	42	6.2	43	80	7	259	25	19	26	27	1.99
18662416--18662455	18	2.2	17	86	8	53	37	0	17	45	1.49
18663309--18663513	114	1.8	113	82	9	265	24	20	25	29	1.99
18664305--18664339	7	5.0	7	85	0	52	5	0	51	42	1.25
18665261--18665730	147	3.2	143	77	5	372	25	15	23	35	1.94
18667583--18667624	13	3.2	13	86	0	57	40	9	2	47	1.49
18667901--18668045	28	5.0	28	75	15	123	45	15	1	37	1.55
18667848--18668034	90	2.1	89	82	9	220	45	14	1	37	1.54
18667996--18668045	16	3.4	16	73	21	63	46	18	2	34	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79