genome.fa.s7.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  61  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20043961--20044027	27	2.5	26	82	7	71	34	1	2	61	1.20
20044231--20044283	27	2.0	26	85	3	70	18	3	9	67	1.33
20044246--20044283	13	2.8	14	80	19	53	21	5	7	65	1.38
20051292--20051389	49	2.0	50	91	2	162	45	6	17	30	1.72
20053327--20053398	36	2.0	35	91	2	117	31	8	27	31	1.86
20058453--20058524	36	2.0	35	86	2	99	31	8	27	31	1.86
20059257--20059289	17	2.0	17	88	5	50	15	12	3	69	1.30
20059364--20059410	18	2.7	17	84	12	60	27	2	2	68	1.13
20065446--20065490	17	2.4	19	82	13	58	64	13	4	17	1.44
20069938--20069996	29	2.0	29	93	0	100	35	27	22	15	1.94
20073003--20073274	134	2.0	134	96	0	499	31	9	16	42	1.80
20074780--20074841	27	2.3	27	94	0	106	35	0	38	25	1.56
20074759--20074839	16	5.4	16	82	14	91	32	0	37	30	1.58
20074818--20074927	45	2.6	44	77	12	122	34	5	28	31	1.80
20074821--20074927	44	2.6	40	73	16	117	35	5	28	30	1.80
20075073--20075107	18	2.0	17	88	5	52	54	0	0	45	0.99
20079101--20079159	11	5.2	11	74	8	55	42	13	1	42	1.54
20080987--20081062	30	2.7	29	85	6	93	53	0	40	5	1.23
20080987--20081129	78	1.9	76	80	2	169	50	0	46	2	1.21
20081040--20081135	21	4.8	20	73	18	74	48	1	48	1	1.15
20081064--20081130	18	3.6	18	72	18	64	46	1	52	0	1.09
20081059--20081110	27	1.9	27	84	0	68	46	1	51	0	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20085040--20085072	1	33.0	1	100	0	66	0	0	0	100	0.00
20087109--20087306	49	4.0	49	99	0	387	24	19	20	35	1.95
20087569--20087615	21	2.3	21	88	3	69	17	27	23	31	1.96
20088035--20088161	61	2.1	62	97	2	240	43	23	7	25	1.79
20088285--20088351	9	7.4	9	80	6	73	26	8	20	43	1.82
20088844--20088884	22	2.0	21	86	13	59	48	24	2	24	1.63
20089936--20090002	9	7.4	9	80	6	73	26	8	20	43	1.82
20115256--20115303	16	3.1	16	76	11	55	33	0	10	56	1.34
20115911--20116089	86	2.1	87	97	2	342	40	4	10	44	1.59
20120768--20120809	19	2.2	19	83	8	50	45	2	4	47	1.36
20124601--20124867	108	2.5	108	93	2	450	32	18	18	30	1.95
20125068--20125138	3	23.3	3	73	13	56	64	2	4	28	1.26
20125068--20125134	18	3.7	17	77	13	62	64	2	4	28	1.28
20126384--20126598	41	5.2	41	93	0	349	25	25	19	30	1.98
20127334--20127371	20	1.9	20	88	0	58	39	13	0	47	1.42
20129569--20129895	44	7.4	44	66	9	164	28	25	16	29	1.96
20129508--20130108	132	4.6	132	90	2	892	29	24	18	28	1.98
20129859--20130037	38	4.2	43	68	20	124	32	21	18	26	1.97
20131546--20131589	15	2.9	15	80	10	54	4	9	2	84	0.85
20135852--20136537	108	6.4	108	96	1	1175	35	16	16	31	1.92
20138260--20138295	16	2.2	16	90	9	56	36	0	5	58	1.22
20138492--20138531	14	2.9	14	84	0	53	32	7	17	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20138515--20138554	20	2.0	20	90	0	62	27	10	12	50	1.72
20138500--20138566	34	1.9	35	87	3	100	32	8	11	46	1.72
20142000--20142029	6	5.0	6	100	0	60	83	0	0	16	0.65
20147097--20147121	11	2.3	11	100	0	50	60	0	16	24	1.36
20147774--20147799	2	13.0	2	100	0	52	50	0	0	50	1.00
20172768--20172846	27	2.9	27	73	0	77	20	26	29	24	1.99
20193202--20193242	18	2.3	18	91	4	66	31	12	19	36	1.89
20193387--20193421	17	2.1	17	89	5	54	48	5	14	31	1.67
20194072--20194648	41	14.1	41	100	0	1154	21	19	24	34	1.96
20196289--20196456	62	2.7	62	91	0	255	35	5	9	49	1.58
20197664--20197691	14	2.0	14	100	0	56	35	7	21	35	1.81
20197756--20198403	324	2.0	324	94	0	1127	33	22	18	25	1.97
20199637--20199671	17	2.1	17	100	0	70	60	28	0	11	1.32
20200350--20200385	6	6.2	6	93	6	56	2	11	16	69	1.29
20200350--20200385	17	2.1	17	89	5	54	2	11	16	69	1.29
20201626--20201811	23	7.9	23	79	11	198	16	6	20	56	1.61
20201661--20201800	45	3.1	45	81	13	196	16	6	20	56	1.62
20201626--20201836	91	2.4	86	89	4	314	15	6	20	57	1.60
20201816--20201857	21	2.1	20	86	8	59	14	7	19	59	1.57
20201903--20201944	21	2.1	20	91	8	68	16	4	19	59	1.54
20202845--20202871	9	3.0	9	100	0	54	22	0	0	77	0.76
20202419--20203019	305	2.0	296	92	3	1006	26	7	14	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20203112--20203149	15	2.5	16	87	12	62	26	0	0	73	0.83
20203112--20203149	16	2.5	15	83	8	51	26	0	0	73	0.83
20208349--20208406	9	6.7	9	71	28	54	1	32	0	65	1.03
20208356--20208410	3	19.0	3	78	14	62	1	32	0	65	1.03
20208349--20208410	19	3.0	20	83	13	72	1	33	0	64	1.03
20213832--20213886	27	2.0	27	96	0	101	49	1	3	45	1.30
20213843--20213886	13	3.3	13	75	6	52	52	0	2	45	1.13
20214084--20214115	17	1.9	16	93	6	55	68	0	0	31	0.90
20223756--20223901	36	4.1	36	100	0	292	39	10	30	19	1.86
20233236--20233589	44	8.0	44	71	16	209	32	19	21	26	1.97
20233290--20233362	37	2.0	37	100	0	146	31	21	19	27	1.97
20233246--20233402	81	1.9	81	81	7	185	32	19	20	27	1.97
20234089--20234140	23	2.4	22	81	9	61	17	48	19	15	1.82
20238907--20238961	27	2.0	28	83	13	71	38	7	3	50	1.48
20241151--20241195	19	2.3	20	75	20	51	26	22	8	42	1.83
20244009--20244033	6	4.2	6	100	0	50	68	0	16	16	1.22
20245469--20246108	50	12.8	50	71	7	447	30	20	24	24	1.99
20245459--20246104	100	6.5	100	93	0	983	30	20	24	23	1.99
20246131--20246408	132	2.1	132	83	2	335	31	19	21	26	1.98
20249579--20249612	17	1.9	18	88	5	52	26	2	26	44	1.69
20256590--20256639	26	1.9	26	87	0	73	42	24	16	18	1.89
20267370--20267514	7	20.7	7	100	0	290	28	0	14	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20269547--20269991	97	4.5	97	91	3	648	40	19	0	39	1.58
20269966--20270004	8	4.9	8	81	12	53	53	30	0	15	1.42
20269967--20270014	24	2.0	24	88	4	71	52	31	0	16	1.45
20270962--20271025	30	2.1	30	100	0	128	51	6	12	29	1.64
20274966--20275013	21	2.3	21	85	0	60	39	2	4	54	1.32
20275074--20275115	22	1.9	22	85	9	59	23	9	33	33	1.87
20278571--20278612	22	1.9	22	85	9	59	23	9	33	33	1.87
20279118--20279157	19	2.0	20	90	4	64	52	0	2	45	1.14
20279920--20279957	16	2.3	17	86	4	51	57	0	7	34	1.28
20280341--20280708	184	2.0	184	98	1	720	34	16	16	32	1.92
20280678--20280785	18	6.2	17	82	11	121	42	11	13	32	1.80
20280678--20280786	35	3.1	34	82	11	116	42	11	13	33	1.80
20281279--20281341	9	6.9	9	78	10	65	0	19	0	80	0.70
20281284--20281350	29	2.3	29	87	7	100	0	19	0	80	0.71
20281310--20281349	13	2.8	14	82	17	55	0	20	0	80	0.72
20281284--20281350	16	4.6	13	75	21	62	0	19	0	80	0.71
20281279--20281347	22	3.1	21	78	17	77	0	18	0	81	0.70
20281788--20281856	13	5.2	13	72	6	57	2	15	7	73	1.17
20282199--20282267	30	2.3	29	80	11	77	42	8	15	33	1.78
20282409--20282691	140	2.0	141	97	0	541	44	15	13	25	1.84
20282837--20283517	75	8.9	76	82	5	748	34	19	18	27	1.95
20282825--20283523	234	3.0	228	82	7	815	35	19	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20292073--20292170	35	2.8	35	82	11	105	41	10	12	35	1.76
20292074--20292201	18	7.3	18	75	16	117	42	10	12	34	1.78
20292076--20292201	53	2.4	53	82	10	152	42	11	12	33	1.78
20292109--20292201	35	2.6	36	84	5	118	41	10	15	32	1.81
20292696--20292762	21	3.3	21	82	13	70	1	16	0	82	0.75
20292695--20292762	22	3.2	21	78	19	70	1	16	0	82	0.75
20292695--20292764	13	5.6	13	73	20	53	1	17	0	81	0.77
20292719--20292762	16	2.8	16	89	6	63	0	18	0	81	0.68
20293170--20293238	13	5.2	13	73	13	59	2	14	7	75	1.13
20293161--20293194	7	4.9	7	86	13	52	0	17	0	82	0.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79