genome.fa.s7.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  72  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23896648--23896785	30	4.5	31	73	9	113	43	4	11	40	1.61
23896648--23896794	61	2.4	62	81	3	163	42	4	12	40	1.63
23897471--23897497	2	13.5	2	100	0	54	48	0	0	51	1.00
23900709--23900746	8	4.9	8	83	6	51	50	0	0	50	1.00
23902731--23902770	21	1.9	21	85	10	55	35	2	0	62	1.09
23902798--23902853	25	2.1	27	84	12	73	42	0	0	57	0.99
23902823--23902858	16	2.1	18	90	10	58	41	0	0	58	0.98
23912964--23913002	20	2.0	20	90	10	62	10	10	0	79	0.94
23915164--23915199	15	2.3	16	85	4	56	41	0	0	58	0.98
23915177--23915207	10	3.1	10	95	0	53	41	0	0	58	0.98
23915382--23915424	16	2.7	16	96	0	77	39	4	37	18	1.72
23915359--23915497	69	2.0	69	90	0	215	31	8	31	28	1.87
23915451--23915489	16	2.4	16	86	0	51	38	2	33	25	1.70
23915464--23915499	16	2.2	16	95	0	63	41	0	30	27	1.56
23915663--23916347	91	7.5	91	99	0	1343	47	4	3	45	1.40
23925271--23925303	10	3.5	10	92	8	52	24	6	6	63	1.40
23925814--23925876	23	2.7	23	83	16	85	53	22	6	17	1.65
23925814--23925888	23	3.3	22	78	12	64	56	21	5	17	1.61
23929494--23929527	16	2.1	16	88	0	50	29	11	17	41	1.85
23932483--23932513	16	1.9	16	93	0	53	35	0	64	0	0.94
23935488--23935520	2	16.5	2	100	0	66	51	0	0	48	1.00
23940631--23940671	14	2.7	15	85	7	57	73	2	2	21	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23941548--23941574	6	4.5	6	100	0	54	0	51	0	48	1.00
23944933--23945366	217	2.0	217	99	0	859	52	8	14	23	1.69
23950103--23950214	44	2.5	44	79	1	116	25	25	19	28	1.99
23950173--23951214	88	11.9	88	84	2	1110	24	25	23	26	2.00
23962257--23962347	3	30.3	3	93	0	128	62	2	4	30	1.27
23962720--23962763	23	1.9	23	85	0	61	29	4	4	61	1.36
23965867--23965899	17	1.9	17	100	0	66	54	6	0	39	1.25
23966119--23966155	3	12.0	3	88	5	56	62	0	2	35	1.10
23967197--23967233	19	1.9	20	94	5	67	13	5	37	43	1.67
23967539--23967635	29	3.4	29	68	13	83	31	15	25	26	1.96
23967557--23967718	28	5.7	29	69	7	100	32	17	24	25	1.97
23967539--23967701	57	2.9	57	83	0	173	33	17	22	26	1.96
23975933--23975973	18	2.3	19	80	20	52	56	29	0	14	1.39
23977462--23977528	33	2.0	33	91	0	107	31	14	32	20	1.93
23986162--23986254	19	4.9	20	72	22	85	74	0	5	20	1.01
23986163--23986251	29	3.1	27	84	13	101	74	0	5	20	1.02
23999673--23999737	27	2.4	27	84	0	85	32	24	24	18	1.97
24009073--24009158	24	3.6	24	85	0	109	22	18	25	33	1.96
24011040--24011071	14	2.3	15	89	10	50	46	3	0	50	1.17
24011276--24011317	21	2.0	21	90	0	66	54	0	4	40	1.21
24016795--24016839	19	2.4	19	92	0	81	26	26	22	24	2.00
24018150--24018202	20	2.6	21	77	14	58	30	22	37	9	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24019939--24019976	20	1.9	19	94	5	67	31	15	28	23	1.96
24022890--24022914	6	4.2	6	100	0	50	52	0	32	16	1.44
24027590--24027640	23	2.2	23	89	0	75	29	21	27	21	1.99
24027632--24027762	23	5.7	23	81	2	129	45	24	16	14	1.84
24029158--24029209	25	2.1	25	88	0	77	34	13	3	48	1.61
24034234--24034294	29	2.1	29	90	0	95	31	8	18	42	1.79
24035714--24035752	6	6.3	6	82	5	51	61	0	23	15	1.33
24038511--24038615	28	3.8	29	78	6	119	34	12	24	28	1.92
24039547--24039668	27	4.6	27	90	1	176	25	24	11	38	1.89
24056846--24057118	133	2.0	134	98	0	530	39	9	9	41	1.70
24061161--24061204	18	2.4	18	85	11	54	75	0	25	0	0.81
24061129--24061200	22	3.3	22	78	16	62	72	4	22	1	1.10
24063949--24063987	20	2.0	20	84	0	51	38	25	7	28	1.83
24074132--24074367	50	4.7	50	78	4	228	22	27	22	27	1.99
24074132--24074372	100	2.4	99	80	3	268	22	27	22	27	1.99
24078238--24078278	14	2.9	15	82	10	59	26	24	24	24	2.00
24078557--24078589	17	2.0	16	94	5	57	39	0	0	60	0.97
24092602--24092982	40	9.6	40	86	1	478	13	29	18	38	1.89
24092602--24092982	20	19.1	20	66	8	159	13	29	18	38	1.89
24109671--24109717	19	2.4	19	86	10	60	65	0	8	25	1.20
24111555--24111596	19	2.2	19	100	0	84	38	21	14	26	1.91
24116169--24116210	19	2.2	19	100	0	84	38	21	14	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24122220--24122487	140	1.9	141	94	0	475	26	18	18	36	1.94
24129405--24129459	23	2.4	23	81	3	58	50	5	3	40	1.43
24133955--24134015	32	1.9	32	83	12	81	45	3	1	49	1.28
24138379--24138420	20	2.1	20	90	0	66	45	9	0	45	1.36
24139168--24139428	5	52.2	5	93	1	389	40	19	3	35	1.70
24139752--24139782	14	2.2	14	94	0	53	45	9	0	45	1.36
24139935--24140142	97	2.1	98	81	2	249	32	31	20	16	1.94
24139925--24140142	49	4.5	49	83	2	242	33	30	19	16	1.94
24143200--24143265	30	2.2	30	83	2	80	25	9	18	46	1.78
24145703--24145763	18	3.4	18	69	0	59	45	19	6	27	1.75
24145701--24145787	36	2.4	36	88	0	120	44	19	6	28	1.76
24147897--24147930	13	2.6	13	85	0	50	14	14	14	55	1.69
24151252--24151307	23	2.5	24	81	18	68	48	3	1	46	1.30
24153823--24154110	125	2.3	125	93	1	479	30	18	22	28	1.97
24156985--24157082	11	9.3	11	67	16	55	42	3	29	24	1.69
24156974--24157082	22	5.1	21	67	16	73	44	2	28	24	1.68
24156961--24157082	62	2.0	62	86	3	174	44	2	27	25	1.67
24157630--24157667	19	2.0	20	89	5	60	55	0	5	39	1.23
24160679--24160730	6	7.7	7	91	6	56	92	0	5	1	0.45
24160686--24160729	1	44.0	1	95	0	79	97	0	2	0	0.16
24160676--24160730	13	4.2	13	90	0	74	90	0	7	1	0.51
24161001--24161197	66	3.0	66	93	0	322	27	16	30	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24163121--24163372	87	2.9	87	88	3	375	37	25	13	23	1.92
24167799--24167892	41	2.3	41	85	3	127	35	17	18	29	1.93
24173439--24173485	21	2.2	22	88	11	71	61	0	0	38	0.96
24174303--24174346	20	2.2	20	91	0	70	38	9	25	27	1.86
24175940--24175977	18	2.2	17	86	9	51	68	2	13	15	1.32
24177316--24177428	44	2.6	44	81	5	131	33	23	15	27	1.95
24177436--24177954	175	3.0	173	87	3	736	22	26	24	26	2.00
24177436--24177954	88	5.9	87	81	5	589	22	26	24	26	2.00
24179221--24179250	13	2.3	13	94	0	51	10	20	0	70	1.16
24180143--24180168	12	2.2	12	100	0	52	15	0	7	76	0.99
24187915--24188146	115	2.0	115	94	0	410	51	9	7	31	1.62
24196933--24196982	13	4.0	13	74	7	50	32	2	2	64	1.16
24199035--24199111	33	2.4	33	81	16	99	36	9	9	45	1.68
24200038--24200071	17	1.9	17	88	5	50	61	11	8	17	1.54
24201717--24202380	332	2.0	332	100	0	1328	34	11	19	34	1.88
24208184--24208233	8	6.4	8	75	11	50	56	28	0	16	1.41
24208186--24208217	15	2.2	14	94	5	55	53	31	0	15	1.43
24209753--24209809	3	21.0	3	73	20	54	70	3	0	26	1.03
24216854--24217106	89	2.8	89	82	1	310	24	24	22	28	1.99
24216846--24217101	134	1.9	133	85	0	350	24	24	21	29	1.99
24216854--24217146	45	6.7	44	77	4	254	25	23	21	29	1.99
24217231--24217828	50	11.9	50	77	3	439	25	20	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24217216--24217822	100	6.0	100	82	3	619	25	20	21	32	1.97
24217281--24217828	150	3.6	149	86	1	673	25	19	21	33	1.97
24217305--24217828	50	10.4	50	76	5	464	25	20	21	33	1.97
24218709--24218746	13	3.0	13	88	11	53	0	18	2	78	0.86
24218707--24218757	17	2.9	17	88	8	68	0	15	3	80	0.86
24219191--24219225	14	2.5	14	90	9	54	2	0	11	85	0.69
24221934--24221986	24	2.2	25	86	3	72	47	5	18	28	1.72
24232447--24232529	44	1.9	42	85	9	114	39	8	12	39	1.73
24232447--24232503	21	2.7	21	94	0	105	42	10	10	36	1.74
24233007--24233079	36	2.0	36	84	12	96	19	5	2	72	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79