genome.fa.s7.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  31  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10700592--10700631	14	2.9	14	84	0	53	42	17	7	32	1.77
10704114--10704540	44	9.7	44	75	6	317	29	26	15	27	1.96
10704114--10704540	89	4.8	88	75	3	367	29	26	15	27	1.96
10704114--10704540	133	3.2	133	89	1	651	29	26	15	27	1.96
10715274--10715315	15	2.7	16	81	7	50	61	11	11	14	1.56
10721510--10721574	13	4.8	13	81	12	69	46	1	16	35	1.57
10721595--10721632	20	1.9	20	88	0	58	47	0	21	31	1.51
10725728--10725824	37	2.6	36	80	11	97	43	3	4	49	1.37
10726039--10726089	25	2.0	25	88	7	77	45	9	5	39	1.62
10726209--10726259	24	2.1	24	100	0	102	49	3	13	33	1.61
10730789--10731766	488	2.0	488	96	0	1812	26	23	16	32	1.96
10740649--10740780	7	18.9	7	100	0	264	14	13	0	71	1.14
10746715--10746747	5	6.6	5	100	0	66	39	18	0	42	1.50
10747268--10747349	4	20.5	4	100	0	164	25	0	24	50	1.50
10750894--10750923	10	3.1	10	90	9	53	73	16	0	10	1.09
10757840--10757885	9	5.3	9	76	10	51	84	2	10	2	0.79
10757840--10757885	17	2.8	16	83	9	65	84	2	10	2	0.79
10758770--10759256	100	4.9	99	86	3	647	32	21	20	24	1.97
10758781--10759289	50	10.2	50	73	6	370	31	21	21	24	1.98
10759251--10759599	44	7.8	44	72	15	250	28	17	23	30	1.97
10759253--10759457	89	2.3	88	81	7	229	25	19	24	30	1.98
10759253--10759496	133	1.8	133	82	10	311	27	18	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10759863--10759892	10	3.1	10	90	9	53	73	16	0	10	1.09
10765103--10765135	13	2.5	13	95	5	57	39	3	6	51	1.42
10765263--10765295	15	2.1	16	88	5	50	18	75	0	6	1.00
10777835--10777902	29	2.4	28	82	9	75	33	1	29	35	1.67
10779290--10779316	6	4.5	6	100	0	54	48	0	33	18	1.49
10785302--10785480	29	6.2	29	87	0	268	21	26	13	37	1.91
10785302--10785480	58	3.1	58	93	0	313	21	26	13	37	1.91
10797189--10798168	489	2.0	487	91	1	1586	28	22	16	32	1.96
10807458--10807566	30	3.6	30	83	0	128	23	22	33	20	1.97
10807450--10807564	60	1.9	60	83	3	151	22	21	33	22	1.98
10814261--10814307	24	2.0	23	91	4	76	46	10	14	27	1.78
10814553--10814588	17	2.1	17	100	0	72	44	0	11	44	1.39
10817439--10818271	418	2.0	413	81	5	955	33	22	15	29	1.94
10818734--10818763	12	2.6	11	94	5	51	20	0	0	80	0.72
10819006--10820723	94	18.3	93	83	2	1688	27	20	18	33	1.96
10819006--10820723	188	9.2	188	83	1	1858	27	20	18	33	1.96
10819310--10819582	50	5.7	51	71	17	228	26	19	19	34	1.96
10819006--10820749	282	6.2	282	82	3	1865	27	20	18	33	1.96
10819328--10819655	44	6.9	49	68	21	198	27	18	19	35	1.95
10819890--10820434	50	11.6	49	64	20	198	27	20	18	33	1.96
10820321--10820465	44	3.2	44	71	18	114	25	20	17	35	1.95
10819009--10820749	375	4.6	376	83	2	1919	27	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10833533--10833628	48	2.0	48	97	0	183	19	20	32	27	1.97
10842432--10842472	21	1.9	22	85	5	57	9	17	0	73	1.09
10842515--10842540	13	2.0	13	100	0	52	61	0	7	30	1.24
10844351--10844905	230	2.4	230	81	9	604	44	7	10	37	1.67
10844353--10844833	226	2.1	230	83	7	590	44	7	10	37	1.68
10845550--10845583	16	2.2	16	89	5	52	29	8	11	50	1.69
10847403--10847459	30	1.9	30	89	7	89	49	3	1	45	1.29
10849654--10849788	42	3.2	42	79	3	128	23	14	21	40	1.91
10849776--10849920	43	3.4	41	71	14	116	21	15	19	44	1.87
10850647--10850698	26	2.1	23	86	10	68	17	15	7	59	1.58
10853171--10853237	25	2.7	25	86	4	91	40	13	16	29	1.87
10858095--10858148	25	2.2	25	100	0	108	46	11	12	29	1.77
10859830--10859895	13	5.1	13	83	0	87	34	25	7	31	1.84
10862033--10862075	18	2.4	17	85	11	59	41	0	16	41	1.48
10867942--10867988	23	2.0	23	100	0	94	34	8	17	40	1.79
10873133--10873194	26	2.4	26	81	5	72	38	9	14	37	1.79
10882204--10882303	28	3.6	28	90	0	146	31	11	27	31	1.91
10889039--10889145	18	6.1	17	74	16	69	33	3	4	57	1.37
10889088--10889133	17	2.6	17	96	3	83	28	4	6	60	1.40
10894244--10894294	17	2.9	17	77	13	59	76	3	0	19	0.94
10895187--10895235	7	7.0	7	86	9	57	69	0	16	14	1.19
10895187--10895235	13	3.5	14	81	16	57	69	0	16	14	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10896523--10896740	120	1.8	120	87	2	330	33	17	22	26	1.96
10896687--10897353	201	3.2	201	84	10	843	34	17	20	27	1.95
10897128--10897250	44	2.8	44	89	0	183	29	21	21	28	1.98
10897366--10897515	50	3.0	49	71	5	131	31	23	21	24	1.98
10898977--10899045	3	23.0	3	90	0	75	31	7	2	57	1.40
10908687--10908715	15	2.0	15	93	6	51	31	20	0	48	1.50
10916604--10916646	3	14.3	3	100	0	86	67	0	32	0	0.91
10918150--10918182	16	2.0	17	88	5	50	48	0	12	39	1.40
10923193--10923380	99	1.9	99	92	0	313	27	21	11	40	1.87
10926100--10926135	18	2.1	17	94	5	63	63	2	0	33	1.08
10926090--10926136	23	2.1	21	84	7	58	61	2	0	36	1.08
10926687--10926731	21	2.1	21	84	8	56	35	31	2	31	1.70
10928256--10928293	14	2.6	14	91	4	58	39	0	2	57	1.12
10934667--10934712	23	2.0	22	91	4	74	73	0	0	26	0.83
10936294--10936478	44	4.2	44	67	18	116	34	22	16	26	1.95
10936038--10936552	263	2.0	264	91	0	834	30	24	17	28	1.97
10936038--10936558	132	4.0	132	91	0	828	29	24	17	28	1.97
10938049--10938100	24	2.2	24	86	6	70	11	19	0	69	1.18
10938580--10938658	1	79.0	1	74	0	68	1	3	7	87	0.71
10938580--10938659	9	8.8	9	77	16	76	1	3	8	86	0.75
10938587--10938658	38	1.9	36	88	5	108	1	4	6	87	0.71
10938580--10938659	18	4.4	17	80	12	88	1	3	8	86	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10947566--10947603	19	2.0	19	85	10	51	13	15	44	26	1.83
10947834--10948048	27	8.0	27	80	6	141	42	18	17	21	1.89
10947838--10948037	54	3.7	54	83	4	242	43	18	18	20	1.88
10947838--10948036	81	2.5	81	85	4	260	43	18	18	20	1.88
10955463--10955506	6	7.3	6	97	0	61	0	22	0	77	0.77
10955466--10955537	6	12.0	6	82	11	58	0	33	0	66	0.92
10955485--10955539	6	9.2	6	89	0	65	0	40	0	60	0.97
10956321--10956392	27	2.7	27	77	12	76	30	16	26	26	1.97
10960262--10960294	6	5.5	6	100	0	66	84	0	15	0	0.61
10975108--10975170	26	2.4	26	86	0	90	38	26	11	23	1.89
10992548--10992594	24	2.0	24	86	0	67	29	0	23	46	1.52
10992640--10992723	23	3.5	23	64	12	60	13	3	33	50	1.58
10992611--10992729	50	2.4	50	100	0	238	16	3	29	50	1.61
10992613--10992700	27	3.4	27	64	12	76	14	4	30	50	1.63
10992930--10993047	40	3.0	40	84	0	155	30	16	23	28	1.97
10993105--10993202	40	2.5	40	81	8	128	26	21	21	30	1.98
10992951--10993466	151	3.4	152	81	6	558	30	16	23	29	1.96
10993298--10993520	116	1.9	115	82	1	277	31	14	23	30	1.94
10993645--10993685	21	2.0	21	85	0	55	24	0	29	46	1.53
10993847--10993898	7	7.6	7	78	4	52	17	0	36	46	1.48
10993847--10993905	14	4.3	14	76	4	57	18	0	33	47	1.49
10994262--10994339	40	2.0	40	92	0	129	34	21	30	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10994457--10994512	18	3.1	18	89	0	85	8	41	16	33	1.79
10998049--10998146	45	2.2	45	84	0	124	33	23	17	25	1.96
11003615--11003669	24	2.4	23	77	14	60	34	1	5	58	1.32
11003929--11003966	20	1.9	20	84	10	51	63	5	21	10	1.46
11009699--11009803	43	2.4	43	95	0	183	25	29	20	23	1.99
11009813--11009845	15	2.1	17	88	11	52	39	6	0	54	1.25
11010010--11010035	9	2.9	9	100	0	52	30	11	11	46	1.76
11011766--11011812	15	3.1	15	87	0	67	0	21	0	78	0.75
11011772--11011835	3	21.7	3	80	3	67	0	26	1	71	0.94
11011763--11011837	6	12.0	6	78	13	53	0	24	1	74	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79