genome.fa.s7.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  78  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26137021--26137045	2	12.5	2	100	0	50	52	0	0	48	1.00
26143832--26144238	203	2.0	204	99	0	807	28	12	22	37	1.90
26148775--26149069	147	2.0	148	99	0	583	39	5	7	47	1.55
26149181--26149225	22	2.0	22	100	0	90	31	28	8	31	1.88
26153683--26153840	72	2.1	74	88	4	230	13	23	17	44	1.85
26153729--26153863	72	1.9	72	84	0	180	12	27	17	42	1.85
26158110--26158261	53	2.9	53	87	0	223	22	19	30	27	1.98
26162822--26162880	4	14.8	4	100	0	118	50	23	0	25	1.49
26163039--26163070	16	2.0	16	100	0	64	62	18	6	12	1.50
26164151--26164207	29	2.0	29	82	6	71	42	1	0	56	1.10
26167606--26168261	39	17.1	39	81	5	737	10	36	7	46	1.66
26167635--26167698	30	2.1	30	94	0	110	4	39	9	46	1.57
26179879--26179949	32	2.2	32	80	12	83	29	2	9	57	1.45
26182790--26183802	393	2.6	392	86	3	1427	37	16	15	30	1.90
26194739--26194770	15	2.1	15	100	0	64	46	6	12	34	1.67
26198407--26198863	249	1.8	250	88	2	693	34	21	15	28	1.94
26198678--26199167	203	2.4	202	81	9	541	31	23	14	30	1.94
26204955--26204996	2	21.5	2	85	4	59	52	0	0	47	1.00
26205827--26205880	26	2.1	26	89	3	83	55	18	14	11	1.68
26215602--26215668	29	2.3	30	73	21	79	65	5	5	22	1.37
26217219--26217714	267	1.8	272	85	6	711	34	16	14	35	1.88
26221348--26221385	17	2.3	17	81	4	51	23	0	7	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26225152--26225193	13	3.2	13	75	24	52	30	4	11	52	1.59
26232366--26232417	27	1.9	27	92	0	86	32	23	32	11	1.90
26233309--26233360	27	1.9	27	96	0	95	13	32	23	30	1.93
26233311--26233369	27	2.2	27	87	0	82	13	28	27	30	1.94
26233420--26233482	27	2.4	27	83	2	92	47	1	9	41	1.45
26247543--26247577	6	5.8	6	93	0	61	54	0	14	31	1.40
26250281--26250318	20	1.9	20	89	10	60	18	2	2	76	1.02
26266427--26266510	41	2.0	41	100	0	168	48	20	7	23	1.74
26269944--26269978	2	17.5	2	93	0	61	48	2	0	48	1.16
26271320--26271353	17	1.9	17	88	5	50	67	0	2	29	1.05
26274392--26274652	124	2.1	124	84	4	330	45	6	6	40	1.57
26275379--26275429	26	2.0	26	88	7	77	25	5	3	64	1.33
26276359--26276650	140	2.1	141	98	0	568	55	8	9	26	1.60
26282448--26282513	34	1.9	34	87	6	98	45	15	7	31	1.74
26289885--26289915	7	4.4	7	95	0	53	0	22	0	77	0.77
26289922--26289982	2	31.5	2	86	6	81	49	1	3	45	1.28
26306416--26306451	18	2.0	18	88	0	54	41	2	0	55	1.14
26312088--26312195	26	3.9	27	73	15	87	18	14	15	50	1.77
26312074--26312259	58	3.4	54	79	10	205	19	16	14	48	1.80
26312110--26312191	27	2.9	28	78	12	87	18	10	17	53	1.72
26312073--26312225	58	2.7	58	86	1	227	18	16	14	50	1.77
26312073--26312214	31	4.9	30	70	20	104	18	16	14	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26312362--26312416	25	2.2	24	84	6	74	54	18	9	18	1.69
26326191--26326250	31	1.9	31	86	0	84	40	11	13	35	1.81
26330613--26330699	37	2.4	36	86	7	124	39	13	20	26	1.90
26335432--26335465	15	2.2	16	89	5	52	32	2	0	64	1.08
26336274--26336334	29	2.1	29	84	0	77	49	14	8	27	1.72
26337215--26337247	12	2.6	13	90	4	50	24	0	3	72	0.98
26341636--26341680	15	3.0	15	93	0	72	0	17	33	48	1.48
26341638--26341678	18	2.3	18	100	0	82	0	14	34	51	1.43
26345415--26345455	21	1.9	22	85	5	57	51	2	2	43	1.28
26360864--26360922	31	1.9	31	92	0	100	33	0	3	62	1.12
26361955--26361988	7	4.7	7	89	7	50	35	0	0	64	0.94
26361955--26361988	15	2.3	15	90	5	52	35	0	0	64	0.94
26361750--26362271	260	2.0	261	99	0	1037	37	4	9	48	1.58
26362215--26362248	7	4.7	7	89	7	50	35	0	0	64	0.94
26362215--26362267	15	3.3	15	82	12	54	37	0	1	60	1.08
26363735--26363761	5	5.4	5	100	0	54	81	0	18	0	0.69
26365680--26365742	29	2.2	29	82	0	72	42	3	12	41	1.59
26367748--26367793	24	2.0	23	82	4	56	28	4	2	65	1.23
26371042--26371066	13	1.9	13	100	0	50	56	8	0	36	1.29
26372509--26372573	24	3.0	21	82	12	94	32	24	12	30	1.92
26372572--26372657	45	1.9	45	97	0	163	19	25	29	25	1.99
26373167--26373237	31	2.3	31	87	0	106	39	9	19	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26375439--26375478	16	2.5	16	91	0	62	37	7	25	30	1.83
26375460--26375552	44	2.1	44	92	6	152	33	4	25	36	1.76
26377775--26377833	27	2.2	26	81	3	73	62	8	5	23	1.43
26377876--26377943	27	2.6	26	85	2	91	17	36	30	14	1.90
26378038--26378075	19	2.0	19	90	10	60	68	0	31	0	0.90
26385745--26385820	27	2.8	27	87	0	98	19	27	36	15	1.93
26385742--26385831	27	3.3	27	83	4	92	17	27	36	17	1.93
26391188--26391237	12	4.2	12	84	0	55	16	46	2	36	1.58
26391191--26391231	15	2.7	15	84	0	55	17	43	2	36	1.62
26391583--26391619	15	2.5	15	86	0	56	16	40	0	43	1.48
26392963--26393025	26	2.4	27	91	2	110	41	7	0	50	1.31
26393092--26393158	27	2.5	27	92	0	107	28	26	28	16	1.97
26393203--26393261	23	2.6	24	83	5	70	71	0	28	0	0.87
26393248--26393300	16	3.3	16	76	7	63	66	1	32	0	1.03
26393209--26393326	38	3.2	39	83	10	151	68	0	30	0	0.95
26393333--26393369	18	2.1	19	90	10	60	35	0	0	64	0.94
26393936--26394006	34	2.1	35	97	2	135	28	9	16	45	1.80
26393975--26394106	65	2.1	65	88	5	200	46	9	4	40	1.56
26394085--26394147	27	2.4	27	94	2	110	44	11	0	44	1.39
26394186--26394248	27	2.3	27	91	0	99	25	23	36	14	1.93
26394620--26394649	16	1.9	15	93	6	51	70	0	0	30	0.88
26397764--26397824	27	2.3	27	88	0	86	16	37	21	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26397864--26397927	28	2.4	27	86	5	85	40	0	10	48	1.38
26398667--26398764	3	34.3	3	69	15	57	0	32	0	67	0.91
26398643--26398835	41	4.8	40	79	14	188	0	31	0	68	0.90
26398700--26398846	5	29.6	5	71	19	53	0	31	0	68	0.90
26398698--26398842	63	2.4	62	77	10	147	0	31	0	68	0.90
26398635--26398818	82	2.2	81	89	3	269	0	30	0	69	0.89
26398702--26398841	36	3.8	37	76	18	114	0	31	0	68	0.90
26398652--26398829	85	2.2	83	84	10	235	0	33	0	66	0.92
26398635--26398845	82	2.6	81	79	14	242	0	31	0	68	0.90
26399244--26399275	2	16.5	2	93	6	57	46	0	0	53	1.00
26405287--26406380	218	5.0	218	97	0	1974	36	22	15	26	1.93
26408158--26408389	108	2.1	110	95	2	432	40	6	8	43	1.61
26409188--26409231	20	2.3	20	88	7	65	45	9	0	45	1.35
26416416--26416465	26	1.9	26	84	8	66	32	8	2	58	1.39
26418241--26418306	31	2.1	31	86	10	91	42	9	12	36	1.74
26427938--26428251	159	2.0	158	86	3	436	21	26	25	26	2.00
26435269--26435572	156	2.0	153	83	5	382	27	23	26	22	2.00
26435574--26435609	12	3.0	12	95	0	63	8	19	50	22	1.74
26440300--26440334	17	2.0	18	88	5	54	68	11	8	11	1.39
26444063--26444248	83	2.4	72	86	12	237	40	22	15	21	1.91
26446692--26446737	24	1.9	24	82	8	58	73	0	19	6	1.04
26448696--26448727	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26451432--26451487	19	2.8	20	78	10	53	50	1	1	46	1.22
26464286--26464325	2	20.0	2	94	0	71	47	2	0	50	1.14
26468935--26468960	10	2.6	10	100	0	52	30	0	19	50	1.48
26478208--26478262	27	2.0	28	89	3	85	50	5	10	32	1.60
26483741--26483769	14	2.0	15	93	6	51	68	6	0	24	1.13
26483734--26483803	22	3.2	20	72	20	52	67	7	2	22	1.29
26484224--26484271	21	2.3	21	100	0	96	10	12	12	64	1.50
26495504--26496291	263	3.0	262	88	4	1188	24	17	18	39	1.92
26495781--26496280	254	2.0	250	91	1	804	24	18	18	40	1.91
26504257--26504396	70	2.0	70	100	0	280	24	25	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79