genome.fa.s7.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  56  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18667800--18668174	157	2.4	158	98	0	716	46	14	1	37	1.53
18668057--18668174	28	4.0	28	70	20	96	45	15	0	38	1.52
18674004--18674157	42	3.6	42	88	0	218	27	21	17	33	1.96
18674007--18674170	85	1.9	84	86	1	229	26	20	17	35	1.94
18674231--18674270	21	1.9	21	94	0	71	47	27	15	10	1.77
18679075--18679115	19	2.2	18	91	4	64	12	0	7	80	0.90
18700207--18700381	96	1.8	97	83	3	237	45	19	20	14	1.85
18701418--18701442	11	2.3	11	100	0	50	16	0	32	52	1.44
18701510--18701542	15	2.2	15	100	0	66	33	0	21	45	1.52
18718466--18718526	28	2.2	29	80	14	74	34	9	9	45	1.70
18723694--18723866	50	3.4	51	80	8	185	40	12	15	32	1.84
18727700--18727784	34	2.5	34	84	3	100	38	23	5	31	1.79
18730843--18730912	28	2.5	28	81	6	79	28	2	2	65	1.21
18731026--18731252	89	2.5	90	86	0	303	34	9	18	37	1.83
18731767--18731929	87	1.9	89	85	5	233	38	17	13	31	1.88
18732120--18732299	10	18.7	9	68	17	78	60	1	6	31	1.32
18732120--18732241	19	6.3	19	73	13	97	60	0	4	33	1.24
18732163--18732300	29	4.8	28	68	16	77	61	1	7	29	1.31
18732181--18732282	48	2.1	48	82	7	118	61	0	7	29	1.30
18732956--18733025	28	2.5	28	81	6	79	28	2	2	65	1.21
18733139--18733365	89	2.5	90	86	0	303	34	9	18	37	1.83
18734021--18734221	10	21.4	9	69	18	83	62	1	5	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18734083--18734135	19	2.7	20	91	5	81	67	0	5	26	1.12
18734085--18734222	29	4.8	28	68	16	77	61	1	7	29	1.31
18734103--18734204	48	2.1	48	82	7	118	61	0	7	29	1.30
18734294--18734363	28	2.5	28	81	6	79	28	2	2	65	1.21
18734477--18734703	89	2.5	90	86	0	303	34	9	18	37	1.83
18742726--18742786	31	2.0	31	86	0	86	39	11	18	31	1.86
18744661--18744708	23	2.1	23	81	11	55	68	6	6	18	1.32
18759025--18759119	9	9.8	10	76	21	80	31	3	0	65	1.08
18759025--18759094	3	23.3	3	83	11	90	32	2	0	64	1.08
18762557--18762600	19	2.2	20	84	4	54	31	22	4	40	1.74
18762701--18762741	20	2.0	21	85	4	57	48	4	19	26	1.69
18767999--18768042	19	2.2	20	84	4	54	31	22	4	40	1.74
18768143--18768183	20	2.0	21	85	4	57	48	4	19	26	1.69
18774432--18774530	37	2.7	37	88	0	144	41	12	19	27	1.86
18776137--18776420	44	6.3	44	77	7	248	34	19	17	29	1.94
18776231--18776425	88	2.2	88	87	2	284	33	20	15	30	1.94
18777998--18778082	6	14.2	6	92	0	107	25	2	5	65	1.27
18782240--18782292	20	2.7	20	75	0	52	32	5	18	43	1.74
18794388--18794736	152	2.3	153	82	7	413	35	8	18	37	1.80
18794388--18794735	78	4.6	76	78	9	316	35	8	18	37	1.81
18798792--18799270	240	2.0	240	98	0	931	39	22	12	24	1.90
18800373--18800534	43	3.8	43	77	4	132	30	26	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18811754--18811819	30	2.2	30	94	0	114	19	9	19	51	1.73
18815905--18815991	29	3.0	29	91	0	147	29	14	18	36	1.91
18818907--18818955	15	3.3	15	77	11	55	48	0	14	36	1.44
18819055--18819079	5	5.0	5	100	0	50	80	0	0	20	0.72
18820484--18820533	21	2.4	21	100	0	100	16	24	30	30	1.96
18820472--18820523	21	2.3	23	83	12	81	11	28	28	30	1.92
18821992--18822036	9	5.0	9	86	0	63	64	2	0	33	1.06
18821995--18822055	18	3.5	17	78	17	72	63	1	0	34	1.04
18821997--18822055	25	2.3	25	83	13	75	66	1	0	32	1.02
18821995--18822055	9	7.1	8	80	15	61	63	1	0	34	1.04
18824123--18824155	2	16.5	2	100	0	66	48	0	0	51	1.00
18827123--18827161	3	13.0	3	100	0	78	33	0	0	66	0.92
18829002--18829026	8	3.1	8	100	0	50	12	0	0	88	0.53
18831213--18831276	29	2.2	29	88	0	92	20	21	35	21	1.96
18831765--18831813	18	2.6	19	78	18	57	22	2	2	73	1.04
18831764--18831813	22	2.3	22	83	10	66	22	2	2	74	1.03
18838203--18838243	14	2.7	15	85	7	57	21	2	2	73	1.07
18839389--18839491	5	20.4	5	82	5	91	35	1	23	38	1.66
18839391--18839447	30	1.9	30	100	0	114	33	1	19	45	1.61
18841701--18841751	25	2.0	25	85	7	68	58	9	3	27	1.47
18845633--18845675	21	2.0	21	81	0	50	58	6	0	34	1.25
18855927--18856114	94	2.0	94	97	0	358	30	9	32	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18858029--18858173	72	2.0	72	98	0	281	27	20	24	28	1.99
18858498--18858605	54	2.0	54	85	3	146	16	22	27	33	1.95
18870673--18870705	9	3.7	9	100	0	66	36	30	9	24	1.86
18876150--18876200	15	3.4	14	81	10	57	56	5	3	33	1.42
18876172--18876216	18	2.5	18	82	10	56	55	2	4	37	1.32
18877441--18877482	17	2.5	17	88	0	57	14	0	9	76	1.02
18883836--18883872	14	2.4	16	86	8	51	54	2	2	40	1.29
18887229--18887371	71	2.0	71	98	1	277	46	4	4	45	1.42
18894254--18894322	32	2.1	33	81	2	77	2	17	4	75	1.09
18894855--18895014	63	2.5	63	81	3	187	26	20	25	28	1.99
18895633--18895693	18	3.5	18	75	8	63	24	8	18	49	1.74
18895632--18895707	34	2.2	34	88	0	107	22	9	18	50	1.75
18905985--18906080	4	24.5	4	95	4	178	25	0	25	50	1.50
18906110--18906172	23	2.7	23	82	4	65	28	11	19	41	1.85
18906183--18906214	14	2.3	14	100	0	64	59	15	12	12	1.61
18907834--18908086	125	2.0	125	96	0	461	28	21	12	37	1.89
18909985--18910017	16	2.0	17	94	5	59	84	0	15	0	0.61
18911866--18911902	9	4.1	9	92	0	65	29	10	13	45	1.77
18912518--18912577	14	3.9	15	72	12	50	51	5	1	41	1.33
18913790--18913817	7	4.0	7	100	0	56	28	0	0	71	0.86
18925904--18925949	9	5.1	9	89	0	74	47	13	8	30	1.72
18926891--18926939	2	26.0	2	80	12	59	46	0	4	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18927763--18927788	5	5.2	5	100	0	52	80	0	0	19	0.71
18928083--18928113	9	3.4	9	90	0	53	25	12	22	38	1.90
18932943--18932992	18	2.8	18	81	0	64	42	2	16	40	1.59
18933319--18933367	25	2.0	25	83	0	62	36	12	18	32	1.88
18939486--18939529	22	2.0	22	95	0	79	29	18	22	29	1.97
18944989--18945028	21	1.9	21	84	0	53	67	2	2	27	1.16
18950733--18950830	49	2.0	49	92	4	162	39	15	21	23	1.91
18951953--18951978	13	2.0	13	100	0	52	53	15	0	30	1.42
18953214--18953252	17	2.3	17	86	0	51	20	30	35	12	1.90
18959467--18959534	31	2.2	31	86	0	91	32	13	13	41	1.83
18959529--18960306	393	2.0	393	98	0	1515	35	13	21	29	1.92
18975906--18975974	30	2.3	29	82	2	84	23	26	11	39	1.88
18975992--18976074	30	2.8	30	88	0	130	27	27	9	34	1.88
18975904--18976123	89	2.5	89	84	1	271	24	27	11	36	1.90
18976917--18976946	16	1.9	15	93	6	51	40	13	0	46	1.43
18979656--18979710	25	2.2	24	87	3	74	30	16	29	23	1.96
18984306--18984347	19	2.3	19	87	4	59	33	0	2	64	1.07
18985533--18985569	13	2.7	14	84	16	51	67	5	5	21	1.31
18993961--18993993	14	2.4	14	85	5	50	42	18	21	18	1.89
18995066--18995102	17	2.1	18	90	10	58	43	0	5	51	1.24
19001482--19001828	44	8.1	44	80	10	405	26	18	25	28	1.98
19001572--19001636	34	1.9	34	96	0	121	23	24	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19001596--19001855	89	2.9	88	79	8	294	28	19	23	28	1.98
19001897--19002617	169	4.3	169	90	2	1079	29	17	27	26	1.97
19007001--19007041	15	2.7	15	92	0	64	73	4	19	2	1.13
19011137--19011207	33	2.2	33	94	0	124	23	9	26	39	1.86
19012473--19012774	144	2.1	144	86	2	419	32	21	20	25	1.97
19012605--19012868	50	5.5	49	67	21	150	32	21	19	25	1.97
19012658--19013165	282	1.8	282	86	0	748	34	19	20	25	1.96
19012618--19013162	94	5.8	94	85	0	667	34	19	20	25	1.96
19013389--19013417	3	10.0	3	92	7	51	68	0	0	31	0.89
19013460--19013498	18	2.2	18	85	0	51	61	25	5	7	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79