genome.fa.s7.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  37  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12317692--12317835	78	1.8	78	81	8	177	26	21	23	28	1.99
12317438--12318279	254	3.3	252	83	4	1024	29	18	24	27	1.98
12317988--12318512	219	2.4	219	84	4	673	28	18	24	28	1.98
12318517--12318666	78	1.9	78	82	5	187	28	18	22	30	1.97
12318825--12318990	44	4.0	44	74	16	174	27	17	24	31	1.97
12318859--12318925	34	1.9	35	87	3	100	25	19	23	31	1.98
12318536--12319184	298	2.2	298	87	1	899	29	18	23	28	1.98
12318886--12319047	44	3.7	45	81	9	149	28	18	22	30	1.97
12318287--12319032	386	1.9	379	82	7	932	28	18	23	29	1.98
12319901--12320050	44	3.4	44	84	0	192	25	18	23	32	1.97
12319986--12320076	44	2.1	44	81	4	103	30	18	19	30	1.96
12320183--12320295	44	2.6	45	81	8	126	30	17	26	25	1.98
12319953--12320465	219	2.3	218	87	1	751	30	18	23	28	1.97
12320391--12320544	44	3.7	43	71	19	132	26	19	26	27	1.99
12320432--12320496	34	1.9	34	87	0	94	21	26	24	27	1.99
12320391--12320534	78	1.8	78	86	5	211	25	20	25	27	1.99
12320653--12320770	44	2.7	44	82	0	146	28	13	26	31	1.94
12320183--12320978	264	3.1	260	84	4	1036	29	17	24	27	1.98
12321129--12327078	44	138.7	43	67	15	748	28	18	24	28	1.98
12321360--12321840	254	1.9	254	89	3	754	29	18	24	28	1.98
12320687--12321909	220	5.7	220	70	13	750	28	18	23	29	1.98
12321863--12322006	78	1.8	78	91	5	238	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12321816--12322373	122	4.4	122	67	19	318	26	19	25	29	1.98
12321585--12322395	385	2.1	386	90	1	1279	26	18	25	29	1.98
12322283--12322347	34	1.9	34	96	0	121	21	26	24	27	1.99
12322239--12322391	78	2.0	78	89	2	236	23	22	25	28	2.00
12322195--12323068	122	6.9	122	68	14	342	26	19	24	28	1.99
12322312--12322953	298	2.1	304	85	3	875	27	19	24	28	1.98
12322571--12327078	88	52.4	88	65	14	921	28	17	24	28	1.98
12322198--12322991	298	2.7	296	77	12	838	27	19	24	28	1.99
12322923--12322987	34	1.9	34	93	0	112	21	26	23	29	1.99
12322882--12323031	78	1.9	78	89	2	230	25	20	24	29	1.99
12322880--12324232	298	4.5	298	83	5	1656	27	18	25	28	1.98
12321332--12324589	981	3.4	975	79	10	3152	27	18	25	28	1.98
12322154--12323592	683	2.1	679	87	2	2073	27	18	24	28	1.98
12323223--12323288	34	1.9	35	84	3	89	28	19	24	27	1.99
12323179--12323328	78	1.9	78	87	2	221	26	18	24	31	1.97
12323557--12323626	34	2.1	34	91	0	113	24	22	27	25	2.00
12323775--12323924	78	1.9	78	87	0	219	26	14	26	33	1.95
12323477--12324608	122	9.0	122	66	17	373	27	17	25	28	1.98
12322880--12325134	298	7.5	298	75	10	1529	28	18	25	28	1.98
12322880--12324232	596	2.3	596	86	5	1851	27	18	25	28	1.98
12324161--12324310	78	1.9	78	81	5	178	24	17	28	30	1.97
12323854--12324825	342	2.8	337	83	5	1193	27	17	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12324419--12324563	78	1.9	78	89	0	227	25	17	26	31	1.97
12324771--12325608	386	2.1	390	83	4	1062	28	17	25	28	1.98
12325578--12325642	34	1.9	34	93	0	112	24	24	23	27	2.00
12324973--12325932	430	2.2	422	83	6	1128	27	18	25	28	1.98
12325141--12326952	220	8.3	220	73	10	944	28	17	24	28	1.98
12326583--12326732	78	1.9	78	84	2	203	28	18	23	30	1.97
12326539--12326758	122	1.8	122	85	4	309	26	18	24	30	1.98
12326581--12327250	298	2.2	297	87	2	941	28	18	24	28	1.98
12326881--12327027	78	1.9	78	88	8	228	27	17	23	31	1.97
12326275--12327019	386	2.0	379	84	3	987	28	17	24	28	1.98
12326952--12327099	44	3.4	43	82	5	172	27	19	22	31	1.98
12327174--12327260	44	2.0	44	83	0	111	25	17	27	29	1.97
12328520--12328670	78	1.9	78	82	2	187	27	19	23	29	1.99
12328591--12329961	44	31.8	44	68	14	303	28	17	25	29	1.98
12328823--12328968	78	1.9	78	88	2	222	26	17	25	30	1.97
12328598--12329236	342	1.9	343	89	2	989	29	17	24	28	1.97
12328941--12329478	220	2.4	220	89	1	785	28	18	23	28	1.98
12329159--12329719	264	2.1	263	83	3	716	27	17	24	29	1.98
12329661--12329952	122	2.4	122	85	5	376	26	16	26	30	1.97
12329771--12329916	78	1.9	78	89	2	231	25	18	26	29	1.98
12330112--12330579	44	10.9	43	71	15	240	27	17	24	30	1.97
12330138--12330290	78	2.0	78	88	2	227	25	17	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12330217--12330734	220	2.4	220	93	1	887	27	19	24	28	1.98
12330480--12330602	44	2.8	43	83	4	131	29	19	23	27	1.98
12330486--12330829	176	2.0	173	89	2	474	29	20	24	26	1.99
12330903--12331250	44	7.9	44	71	9	174	27	18	24	29	1.98
12331131--12331246	45	2.6	44	87	2	160	26	19	25	28	1.99
12336408--12336445	11	3.5	11	89	3	60	81	18	0	0	0.69
12336449--12336485	20	1.9	20	88	5	58	75	8	2	13	1.13
12337626--12338675	44	24.5	44	79	10	934	26	17	26	29	1.98
12337835--12337899	34	1.9	34	93	0	112	23	23	24	29	1.99
12337654--12338675	210	4.8	210	74	12	724	26	18	25	29	1.98
12337626--12338627	254	3.9	254	78	8	1072	26	17	26	29	1.98
12338524--12338878	44	8.1	44	75	10	192	27	19	25	27	1.99
12338512--12338872	88	4.1	88	71	12	294	26	19	24	28	1.99
12338460--12338721	132	2.0	132	80	7	291	26	18	26	28	1.98
12338600--12339007	176	2.3	176	93	0	683	28	19	24	27	1.98
12338127--12338838	386	1.8	386	86	4	1044	27	18	24	28	1.98
12338686--12338974	88	3.3	88	69	11	248	28	21	24	26	1.99
12339120--12339214	44	2.1	45	84	5	122	31	22	23	23	1.98
12339662--12339736	19	3.8	19	93	6	132	37	10	16	36	1.83
12339996--12340071	36	2.1	36	80	11	84	38	9	1	51	1.42
12340156--12340211	23	2.3	23	75	6	58	33	8	1	55	1.42
12341689--12341766	33	2.4	33	84	0	102	38	20	11	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12341689--12341775	33	2.6	33	80	3	95	41	18	12	27	1.87
12344147--12344200	18	2.9	18	81	8	63	77	3	16	1	1.00
12346176--12346268	44	2.1	44	84	9	118	32	5	25	36	1.79
12346558--12346590	17	1.9	17	93	0	57	33	0	0	66	0.92
12353133--12353301	50	3.4	50	85	2	205	21	27	23	27	1.99
12354938--12354979	14	2.9	14	83	16	59	23	0	2	73	0.94
12355813--12355852	20	2.0	20	100	0	80	5	15	30	50	1.65
12358600--12358647	25	1.9	25	95	0	87	25	22	16	35	1.95
12372872--12372907	16	2.3	17	81	18	51	72	0	8	19	1.10
12375170--12375232	9	7.2	8	74	22	56	69	1	0	28	0.97
12375169--12375230	18	3.5	18	80	10	67	70	1	0	27	0.96
12375170--12375233	28	2.4	27	87	7	87	68	1	0	29	0.99
12375440--12375496	28	2.0	28	82	3	69	42	1	0	56	1.10
12376877--12376931	22	2.5	23	75	21	64	38	5	14	41	1.69
12386558--12386744	88	2.1	88	85	2	241	28	22	24	23	1.99
12386684--12386799	57	2.0	57	83	0	142	31	22	26	19	1.98
12386604--12386882	145	1.9	145	83	1	362	27	24	26	21	2.00
12386741--12387160	88	4.8	88	78	1	347	28	23	24	23	1.99
12386888--12386992	44	2.4	45	79	6	106	28	27	20	23	1.99
12386791--12387032	89	2.7	89	79	0	225	28	24	23	23	1.99
12386791--12387124	177	1.9	177	82	0	425	28	23	23	23	1.99
12387140--12387519	131	2.9	131	91	1	591	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12387156--12387470	44	7.2	44	64	11	117	28	20	23	26	1.99
12389385--12389462	28	2.8	28	84	7	104	32	11	1	55	1.44
12390989--12391026	19	2.0	19	90	10	60	65	0	5	28	1.14
12392801--12392939	75	1.9	74	84	4	190	50	7	10	31	1.65
12395084--12395227	53	2.7	53	74	7	139	28	21	18	31	1.96
12395256--12395377	56	2.1	57	86	3	174	34	25	17	22	1.96
12395978--12396027	26	1.9	26	91	0	82	32	16	10	42	1.81
12395983--12396027	13	3.5	13	79	11	56	33	15	8	42	1.78
12399280--12399422	63	2.3	63	86	2	189	27	25	19	27	1.99
12399968--12400014	20	2.3	20	78	7	60	68	0	25	6	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79