genome.fa.s7.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  42  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13818080--13818142	25	2.3	27	78	15	76	38	6	20	34	1.78
13818096--13818145	25	2.0	25	100	0	100	40	8	24	28	1.83
13822151--13822203	26	2.0	26	96	0	97	54	3	5	35	1.42
13823926--13823989	31	2.1	31	85	5	85	45	14	6	34	1.70
13828349--13828389	18	2.3	19	91	8	68	17	46	24	12	1.82
13832529--13833212	340	2.0	340	97	0	1307	28	13	12	45	1.80
13843815--13843847	9	3.7	9	84	15	50	27	9	21	42	1.83
13848182--13848305	20	5.4	20	66	26	68	54	8	11	25	1.65
13848168--13848311	48	3.0	48	100	0	288	52	8	12	27	1.67
13848202--13848285	28	3.3	28	68	25	94	51	5	14	28	1.65
13848180--13848304	24	5.2	24	62	27	68	53	8	12	25	1.66
13854056--13854119	31	2.1	31	82	5	76	28	4	4	62	1.35
13856973--13857034	21	3.0	21	74	9	63	19	20	16	43	1.88
13867505--13867547	22	2.0	22	86	4	61	37	0	9	53	1.33
13869012--13869054	19	2.3	19	100	0	86	37	0	23	39	1.55
13873342--13873446	25	4.7	23	73	20	91	44	9	11	34	1.73
13882446--13882480	18	1.9	18	94	0	61	54	5	11	28	1.59
13882599--13882643	18	2.6	17	89	6	65	48	2	0	48	1.13
13882599--13882628	2	15.0	2	92	0	51	53	0	0	46	1.00
13883710--13883826	36	3.3	36	72	9	114	22	23	23	29	1.99
13883691--13883790	36	2.9	34	70	11	94	23	26	23	28	1.99
13883691--13883943	70	3.6	70	84	0	335	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13885908--13886926	511	2.0	512	99	0	2031	30	8	20	39	1.83
13887281--13887402	43	2.9	42	82	4	147	23	17	27	31	1.97
13889153--13889289	42	3.3	42	86	2	186	28	16	24	29	1.97
13889139--13889339	84	2.4	84	78	9	212	30	15	23	29	1.96
13889139--13889347	42	5.0	43	78	8	184	30	15	23	30	1.96
13894603--13894659	28	2.0	29	82	3	71	50	3	17	28	1.62
13895828--13896127	41	7.3	41	97	0	573	24	19	29	27	1.98
13902512--13902557	20	2.2	21	88	7	67	30	2	8	58	1.40
13910526--13910662	40	3.5	40	79	8	145	28	19	21	29	1.98
13910529--13910677	40	3.8	39	80	9	140	30	20	21	27	1.98
13910527--13910969	193	2.3	195	79	7	492	31	18	21	28	1.97
13910827--13911038	114	1.9	115	89	3	338	29	18	24	27	1.98
13911056--13911116	7	8.6	7	74	3	59	26	1	22	49	1.59
13914853--13915023	43	4.0	43	76	7	150	30	16	22	29	1.96
13917062--13917112	3	16.7	3	95	4	93	66	0	1	31	1.03
13918006--13918080	36	2.1	36	82	0	87	38	1	16	44	1.56
13918176--13918307	70	1.9	70	85	0	183	25	22	21	30	1.99
13920330--13920374	19	2.4	18	85	3	54	37	2	35	24	1.68
13921189--13921213	3	8.3	3	100	0	50	68	0	0	32	0.90
13933195--13933233	20	2.0	20	85	10	53	66	2	2	28	1.18
13933265--13933319	26	2.0	27	86	10	76	45	3	10	40	1.57
13933377--13933426	24	2.2	22	89	7	73	48	2	6	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13934337--13934391	26	2.0	27	86	10	76	45	3	10	40	1.57
13935891--13936410	252	2.1	252	88	1	790	27	24	17	29	1.98
13955585--13955619	16	2.2	16	89	0	52	42	22	17	17	1.88
13957240--13957278	20	2.0	20	85	10	53	66	2	2	28	1.18
13957309--13957405	30	3.1	30	77	13	104	46	3	11	39	1.55
13981466--13981521	29	1.9	29	85	0	76	39	0	1	58	1.08
13982505--13982552	16	3.1	15	76	8	51	62	0	2	35	1.07
13982505--13982576	31	2.3	31	81	11	85	61	0	1	37	1.05
13983035--13983932	472	1.9	472	100	0	1796	31	15	18	34	1.92
13985055--13986066	505	2.0	505	100	0	2024	27	16	21	33	1.95
13988824--13988857	16	2.1	17	88	5	52	58	0	0	41	0.98
13995353--13995413	25	2.4	25	78	10	70	18	29	21	31	1.96
14007140--14007189	3	16.7	3	79	8	57	30	30	6	34	1.81
14015154--14015208	25	2.2	25	86	0	74	21	29	16	32	1.95
14020148--14020195	23	2.1	23	88	3	71	41	0	25	33	1.55
14032844--14032920	31	2.5	31	91	4	120	19	40	22	18	1.92
14039512--14039562	20	2.5	20	87	9	77	39	17	19	23	1.92
14045190--14045255	28	2.2	29	89	7	98	48	3	3	45	1.33
14045245--14045340	29	3.2	29	68	8	75	47	9	3	39	1.51
14047090--14047199	47	2.4	47	82	1	141	46	21	12	19	1.83
14049399--14049772	188	2.0	188	94	0	658	33	16	11	38	1.85
14053102--14053506	36	11.0	37	81	4	410	34	20	14	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14053102--14053523	73	5.7	72	81	4	443	34	20	14	30	1.93
14053102--14053467	146	2.5	145	86	2	518	34	20	14	30	1.93
14064421--14064621	56	3.6	56	82	0	240	35	15	13	34	1.87
14064421--14064621	84	2.4	85	83	3	255	35	15	13	34	1.87
14064443--14064593	28	5.4	28	85	3	178	37	13	13	35	1.84
14064462--14064622	28	5.8	28	85	7	175	34	16	14	34	1.89
14064468--14064642	28	6.2	28	83	11	164	34	16	14	33	1.90
14064468--14064642	56	3.1	55	78	9	183	34	16	14	33	1.90
14065957--14066011	27	2.0	27	100	0	110	38	18	10	32	1.85
14067278--14067494	108	2.0	108	97	0	407	28	26	17	28	1.97
14070622--14070676	21	2.6	21	78	15	60	32	5	9	52	1.56
14071099--14071141	18	2.4	18	80	0	50	41	6	18	32	1.77
14071614--14071675	30	2.1	30	100	0	124	46	17	9	25	1.79
14072172--14072229	31	1.9	30	82	3	71	32	8	13	44	1.75
14081677--14081708	16	2.0	16	93	0	55	31	6	9	53	1.58
14099823--14099863	21	2.0	21	85	0	55	21	21	17	39	1.93
14102292--14102355	14	4.6	14	78	9	60	32	15	0	51	1.44
14102277--14102343	7	9.6	7	76	14	59	28	13	0	58	1.36
14103191--14103393	101	2.0	100	98	0	361	48	7	14	29	1.72
14103566--14103613	7	6.9	7	100	0	96	12	0	43	43	1.42
14114779--14114825	19	2.4	19	86	10	60	53	6	2	38	1.39
14118148--14118180	15	2.1	16	88	5	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14119112--14119148	18	2.1	18	94	0	65	18	27	10	43	1.83
14119114--14119157	18	2.4	18	88	0	61	18	27	9	45	1.79
14122671--14123048	127	3.0	126	85	2	535	28	18	16	36	1.93
14123117--14123248	34	4.0	34	75	7	130	39	15	0	45	1.46
14123272--14123330	20	3.0	20	64	26	52	44	25	0	30	1.55
14129173--14129211	14	2.7	15	80	4	53	38	0	7	53	1.30
14131155--14131184	12	2.5	12	94	0	51	23	43	26	6	1.78
14139983--14140013	2	15.5	2	100	0	62	51	0	0	48	1.00
14142177--14142221	16	2.6	18	86	10	58	37	2	4	55	1.32
14146012--14146055	19	2.3	19	92	4	70	50	4	13	31	1.62
14146039--14146076	14	2.7	15	88	8	53	39	5	7	47	1.55
14149152--14149196	19	2.3	19	88	3	72	22	13	31	33	1.92
14153394--14153565	29	5.8	28	74	18	127	19	16	6	57	1.60
14153394--14153565	59	2.9	59	89	1	238	19	16	6	57	1.60
14153422--14153602	59	3.1	56	84	8	172	20	15	4	59	1.55
14155534--14155754	121	1.8	121	82	0	280	36	10	7	45	1.67
14159088--14159235	71	2.1	70	86	3	199	39	11	4	43	1.62
14167001--14167031	16	1.9	16	93	0	53	54	3	0	41	1.16
14167685--14167709	5	5.0	5	100	0	50	60	40	0	0	0.97
14170938--14171002	30	2.2	30	78	10	71	26	3	10	60	1.45
14171701--14171735	18	1.9	18	88	0	52	65	5	0	28	1.15
14171772--14171836	29	2.2	29	97	0	121	30	27	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14172268--14172311	20	2.3	19	84	7	54	22	0	4	72	1.02
14174022--14174060	20	2.0	20	90	10	62	51	0	0	48	1.00
14174693--14174735	18	2.4	18	80	7	52	46	2	0	51	1.13
14177205--14177250	23	2.0	23	82	0	56	30	10	32	26	1.90
14177661--14177729	6	11.5	6	76	6	68	47	4	33	14	1.64
14180220--14180285	29	2.3	29	89	0	96	37	27	9	25	1.86
14186065--14186104	21	1.9	21	84	0	53	45	5	5	45	1.47
14187812--14188206	175	2.3	174	87	3	553	45	7	14	31	1.74
14199412--14199454	21	2.0	21	90	0	68	23	11	11	53	1.69
14203815--14203856	16	2.5	17	84	7	59	50	0	9	40	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79