genome.fa.s7.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  43  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14211230--14211258	2	14.5	2	100	0	58	48	0	0	51	1.00
14213164--14213205	19	2.2	19	87	8	59	71	2	0	26	0.98
14214646--14214973	163	2.0	165	98	1	642	55	5	3	35	1.40
14215458--14215510	19	2.8	19	76	23	51	50	15	0	33	1.44
14226248--14227001	88	8.6	88	88	1	1118	24	24	23	27	2.00
14228260--14228359	51	2.0	50	88	3	148	12	24	20	44	1.85
14234552--14234596	22	2.0	22	91	0	72	11	15	6	66	1.42
14235617--14235658	14	2.9	14	82	13	50	73	0	11	14	1.09
14235619--14235659	21	2.0	21	90	9	66	75	0	9	14	1.04
14245135--14245204	34	2.1	34	97	0	131	38	27	8	25	1.85
14256644--14256685	22	1.9	22	95	0	75	9	21	28	40	1.84
14256749--14256890	43	3.3	43	89	7	225	30	33	17	18	1.94
14257083--14257142	18	3.4	18	64	13	52	40	10	6	43	1.64
14260875--14261241	40	9.0	41	87	2	429	30	30	17	21	1.96
14260875--14261241	122	3.0	120	83	7	438	30	30	17	21	1.96
14260895--14261241	81	4.3	81	83	4	398	31	30	17	20	1.96
14268959--14269000	16	2.6	16	92	0	66	42	7	2	47	1.43
14268974--14269029	23	2.5	23	82	2	69	44	1	1	51	1.22
14269296--14269392	13	7.4	13	75	2	77	42	3	17	37	1.65
14269283--14269342	26	2.3	26	85	2	75	45	1	18	35	1.60
14269296--14269407	53	2.1	53	81	3	127	42	2	17	36	1.64
14275895--14275970	30	2.4	33	82	8	86	57	1	6	34	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14275907--14275968	22	2.9	22	90	4	92	59	0	8	32	1.26
14276748--14276823	30	2.4	33	82	8	86	57	1	6	34	1.33
14276760--14276821	22	2.9	22	90	4	92	59	0	8	32	1.26
14277090--14277196	54	2.0	54	98	0	205	25	35	21	17	1.95
14293327--14293527	40	5.0	40	92	0	285	44	26	14	13	1.83
14295213--14295258	16	2.9	16	78	18	51	69	2	2	26	1.11
14295213--14295259	17	2.8	17	81	12	53	70	2	2	25	1.10
14295230--14295272	23	1.9	23	90	4	70	74	2	0	23	0.93
14298753--14298786	17	1.9	18	88	5	52	61	0	14	23	1.33
14302909--14302983	27	2.8	27	83	0	96	21	24	18	36	1.95
14303002--14303340	161	2.1	160	83	1	426	25	23	16	34	1.95
14305665--14305701	15	2.4	16	90	4	58	62	0	0	37	0.96
14307616--14307655	19	2.1	19	86	9	55	67	20	12	0	1.22
14319488--14319567	38	2.1	38	95	0	142	36	6	18	38	1.76
14319546--14320048	31	16.3	31	72	10	325	34	6	15	43	1.73
14319526--14320048	92	5.7	92	91	0	841	34	7	15	42	1.75
14319546--14320022	61	7.8	62	72	9	352	34	7	15	42	1.74
14320218--14320331	41	2.7	42	78	8	117	30	15	21	32	1.94
14325735--14325792	29	2.0	29	96	0	107	31	25	3	39	1.73
14329215--14329287	32	2.5	27	78	19	92	26	2	19	52	1.59
14329228--14329288	32	1.9	32	96	0	113	27	3	18	50	1.62
14346660--14346698	20	2.0	20	94	0	69	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14346819--14346856	14	2.7	15	92	8	62	42	18	2	36	1.64
14355623--14355737	50	2.2	52	76	4	126	38	13	13	35	1.83
14361287--14361365	39	2.0	39	87	0	113	36	10	27	25	1.88
14362909--14363000	45	2.0	45	95	0	166	26	17	23	32	1.97
14383521--14383560	20	2.0	20	85	0	53	25	15	0	60	1.35
14390304--14390474	85	2.0	86	97	1	326	39	5	12	42	1.68
14391095--14391136	18	2.3	18	95	0	75	45	19	0	35	1.50
14394303--14394337	16	2.2	16	89	0	52	17	5	0	77	0.96
14394303--14394349	23	2.0	23	87	4	67	21	4	0	74	0.99
14400816--14401488	88	7.7	88	88	1	965	28	27	23	20	1.99
14400829--14401320	44	11.2	44	62	6	163	27	27	23	20	1.99
14401490--14401695	44	4.7	44	71	10	145	26	20	25	28	1.99
14401426--14401743	131	2.4	131	80	4	372	27	23	23	25	2.00
14401894--14402082	100	1.9	99	82	3	236	28	21	23	25	1.99
14402093--14402191	44	2.2	44	82	3	119	33	21	18	27	1.96
14403616--14403650	16	2.2	16	89	0	52	17	5	0	77	0.96
14403616--14403662	23	2.0	24	87	4	69	21	4	0	74	0.99
14404050--14404238	100	1.9	99	82	3	236	28	21	23	25	1.99
14404249--14404347	44	2.2	44	82	3	119	33	21	18	27	1.96
14406203--14406250	24	2.0	24	87	0	69	20	4	0	75	0.97
14406203--14406248	17	2.8	16	86	6	56	19	4	0	76	0.96
14415928--14415970	17	2.5	17	100	0	86	16	20	32	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14416341--14416381	20	2.0	20	90	0	64	41	17	4	36	1.71
14419945--14419988	22	2.0	22	81	0	52	56	2	0	40	1.11
14420601--14420672	34	2.1	34	87	5	101	13	16	9	59	1.60
14420653--14420691	6	6.5	6	100	0	78	0	15	0	84	0.62
14423591--14423620	15	1.9	16	93	6	53	56	0	0	43	0.99
14423610--14424206	307	1.9	308	99	0	1187	42	8	11	37	1.72
14427073--14427103	15	2.1	15	100	0	62	25	25	6	41	1.79
14428692--14428734	21	2.0	21	100	0	86	44	13	13	27	1.83
14430299--14430330	2	16.0	2	100	0	64	50	0	0	50	1.00
14430373--14430398	7	3.7	7	100	0	52	42	0	0	57	0.98
14431504--14431533	2	15.0	2	100	0	60	50	0	0	50	1.00
14431576--14431601	7	3.7	7	100	0	52	42	0	0	57	0.98
14434179--14434456	144	1.9	144	94	1	486	30	16	27	25	1.97
14444128--14444503	45	9.0	45	70	16	218	29	19	25	26	1.98
14444183--14444336	81	1.9	81	93	0	263	27	20	25	25	1.99
14453296--14453347	24	2.2	24	85	0	68	38	3	7	50	1.50
14455886--14455961	39	1.9	39	100	0	152	23	15	26	34	1.95
14460027--14460062	14	2.6	14	86	0	54	25	38	2	33	1.70
14460377--14460432	17	3.7	17	67	30	54	33	12	10	42	1.77
14460372--14460430	27	2.2	27	87	0	82	37	11	8	42	1.72
14460382--14460435	27	2.0	27	100	0	108	29	11	11	48	1.73
14463073--14463105	17	2.0	17	88	5	50	39	21	0	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14468753--14468799	25	2.0	24	83	8	60	46	29	0	23	1.52
14469942--14469998	29	2.0	29	89	0	87	21	40	15	22	1.91
14472132--14472185	16	3.3	16	76	2	54	42	16	3	37	1.66
14472720--14472784	29	2.3	28	94	5	121	21	16	23	38	1.93
14477007--14477031	10	2.5	10	100	0	50	16	8	8	68	1.38
14477815--14477873	21	2.8	20	80	14	57	54	3	1	40	1.27
14480861--14480893	14	2.3	15	89	5	50	24	0	0	75	0.80
14487853--14487919	27	2.5	26	81	11	82	62	0	1	35	1.04
14489099--14489234	41	3.4	41	77	9	156	32	24	17	25	1.97
14493738--14493791	28	1.9	28	81	7	65	33	14	12	38	1.85
14493946--14494079	64	2.1	64	94	0	232	36	9	13	40	1.77
14494704--14494757	16	3.4	16	86	0	81	31	1	35	31	1.69
14494736--14494826	45	2.0	44	85	2	119	30	5	28	35	1.80
14494991--14495025	18	2.0	17	88	5	52	54	0	0	45	0.99
14511060--14511122	28	2.2	29	91	2	101	28	12	30	28	1.93
14521843--14522160	153	2.1	153	94	0	555	44	16	5	33	1.70
14522360--14522520	41	3.9	41	94	0	259	30	22	19	26	1.98
14529990--14530043	19	2.8	19	94	0	99	37	9	16	37	1.81
14529979--14530050	38	2.0	36	84	10	94	37	9	16	36	1.82
14529990--14530066	38	1.9	40	87	10	113	36	7	16	38	1.78
14530248--14530292	23	2.0	23	81	0	54	22	0	15	62	1.33
14544860--14544894	18	1.9	19	88	11	56	65	8	0	25	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14546477--14546524	25	2.0	25	83	4	62	18	25	18	37	1.94
14548709--14548738	16	1.9	16	93	6	53	50	20	0	30	1.49
14555948--14556060	59	1.9	59	92	0	190	45	9	20	24	1.81
14565147--14565182	18	2.0	18	100	0	72	38	27	16	16	1.90
14569351--14569385	15	2.4	15	90	4	54	34	8	0	57	1.29
14570087--14570818	105	6.9	105	83	5	931	30	17	19	32	1.95
14570097--14570818	212	3.4	212	95	0	1275	30	18	19	31	1.96
14577160--14577194	18	1.9	18	88	0	52	2	28	0	68	1.04
14580868--14580906	17	2.4	16	84	16	53	41	2	7	48	1.45
14586694--14586741	19	2.5	20	80	10	55	31	14	16	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79