genome.fa.s7.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  59  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19540004--19540046	12	3.7	11	82	17	52	79	2	2	16	0.95
19541639--19541717	40	2.0	41	82	7	99	17	25	15	41	1.88
19542084--19542119	15	2.4	15	90	0	54	36	38	8	16	1.79
19558892--19558924	17	2.0	17	88	5	50	45	21	0	33	1.52
19559710--19559845	40	3.4	40	78	5	130	30	27	16	25	1.96
19562644--19562674	9	3.4	9	90	0	53	25	12	22	38	1.90
19562727--19562763	9	4.1	9	89	0	56	45	10	10	32	1.74
19564222--19564269	22	2.2	22	92	7	80	70	6	0	22	1.09
19566568--19566615	22	2.2	22	88	3	71	68	6	10	14	1.37
19566708--19566757	20	2.5	21	80	9	68	62	18	14	6	1.51
19567142--19567188	23	2.1	22	84	4	58	48	10	8	31	1.68
19567154--19567196	20	2.0	23	86	13	65	48	9	13	27	1.73
19567705--19567750	17	2.8	17	75	15	51	63	6	0	30	1.20
19568268--19568311	15	3.0	15	83	6	54	29	2	0	68	1.02
19568279--19568303	7	3.6	7	100	0	50	24	0	0	76	0.80
19569909--19570530	114	5.4	114	90	2	887	35	18	21	25	1.96
19569909--19570530	229	2.7	228	91	1	978	35	18	21	25	1.96
19569909--19570530	343	1.8	342	91	1	1023	35	18	21	25	1.96
19572331--19572389	23	2.5	24	81	8	77	25	38	0	35	1.56
19572331--19572389	11	5.1	12	72	12	52	25	38	0	35	1.56
19573583--19573640	25	2.3	26	90	3	91	37	15	5	41	1.70
19574316--19574352	18	2.0	20	89	10	60	43	21	18	16	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19574361--19574625	42	6.2	44	81	5	210	26	18	26	27	1.98
19574425--19574625	42	4.8	41	83	3	213	25	19	25	29	1.98
19576342--19576377	15	2.4	15	90	0	54	33	5	0	61	1.19
19579749--19579789	19	2.2	18	86	4	55	34	17	0	48	1.47
19580211--19580254	9	4.8	9	83	5	61	2	20	0	77	0.88
19580216--19580254	19	2.1	19	90	0	60	2	17	0	79	0.84
19586533--19586565	14	2.4	14	85	15	50	60	0	0	39	0.97
19598572--19598631	23	2.7	23	84	7	70	56	1	1	40	1.19
19598577--19598612	11	3.2	11	88	7	54	50	0	2	47	1.15
19610133--19610291	42	3.7	42	75	5	133	30	25	18	25	1.98
19610630--19610658	11	2.5	12	94	5	51	34	17	0	48	1.47
19614680--19614835	79	2.0	79	100	0	312	42	6	8	42	1.62
19615823--19615864	21	2.0	21	85	0	57	50	7	7	35	1.57
19618077--19618105	3	9.7	3	100	0	58	65	0	34	0	0.93
19622119--19622149	16	1.9	16	93	0	53	45	6	6	41	1.55
19623745--19623841	31	3.1	31	89	2	149	37	14	7	41	1.73
19624680--19624725	24	1.9	24	86	0	65	45	0	2	52	1.13
19630814--19630850	13	2.7	14	91	4	58	72	0	5	21	1.04
19632236--19632319	44	1.9	43	90	0	123	29	22	17	29	1.97
19632282--19633190	44	20.9	44	69	17	402	27	22	20	29	1.98
19632248--19632709	215	2.1	218	89	1	705	27	23	20	29	1.99
19632497--19633049	175	3.2	173	84	5	708	26	23	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19632589--19633131	175	3.1	175	84	5	701	27	22	20	29	1.99
19632248--19633276	392	2.6	389	85	4	1408	27	22	20	29	1.99
19632681--19633280	217	2.8	217	83	7	627	27	22	21	29	1.99
19632589--19633274	348	2.0	347	80	7	786	27	22	21	29	1.99
19647088--19647121	17	1.9	17	88	5	50	67	0	0	32	0.91
19652372--19652432	29	2.2	28	80	11	74	59	4	3	32	1.35
19654409--19654522	59	1.9	60	96	1	212	47	16	1	34	1.57
19659381--19659536	51	2.8	57	77	13	182	46	7	15	30	1.72
19669321--19669356	18	2.0	18	94	0	63	36	0	5	58	1.22
19672258--19672509	45	5.6	45	87	0	371	30	17	23	28	1.97
19672258--19672516	90	2.9	90	93	1	430	30	18	23	28	1.97
19672523--19672729	44	4.8	43	76	9	197	28	23	22	25	1.99
19673113--19673157	23	2.0	23	86	4	65	37	6	17	37	1.76
19674461--19674717	65	4.0	65	98	0	487	28	21	17	33	1.96
19681566--19681645	26	3.0	26	69	20	67	68	5	2	23	1.21
19685350--19685406	3	19.0	3	82	7	71	29	3	0	66	1.08
19687039--19687069	16	1.9	16	100	0	62	22	19	25	32	1.97
19687506--19687551	19	2.4	18	82	10	56	23	19	8	47	1.77
19690379--19690421	7	6.0	7	81	13	52	65	0	18	16	1.28
19690383--19690429	13	3.5	13	78	16	51	63	0	19	17	1.30
19691722--19692213	44	11.2	44	82	8	474	33	11	22	32	1.91
19691726--19692199	88	5.4	88	83	5	548	32	11	22	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19692191--19692226	14	2.6	14	95	0	63	50	13	22	13	1.77
19692147--19692271	58	2.2	58	91	0	196	36	13	24	25	1.92
19692205--19692632	44	9.7	44	92	0	649	30	13	25	30	1.94
19691717--19692632	132	6.8	132	84	6	968	31	12	24	31	1.92
19694112--19694151	3	13.3	3	84	10	55	30	2	0	67	1.04
19696555--19696661	56	1.9	55	90	1	169	42	11	7	39	1.69
19713613--19713880	138	1.9	138	100	0	536	23	23	10	43	1.84
19725519--19725586	33	2.1	33	100	0	136	38	27	2	30	1.72
19727024--19727123	9	10.7	9	71	16	69	33	3	0	64	1.09
19727032--19727123	19	4.8	18	72	16	62	32	3	0	64	1.10
19727058--19727097	21	1.9	21	85	10	55	40	2	0	57	1.12
19727190--19727336	76	1.9	78	84	6	201	36	7	14	42	1.74
19734222--19734328	50	2.2	47	80	15	121	72	5	12	9	1.25
19735246--19735305	6	9.7	6	96	3	102	70	0	15	15	1.18
19736829--19737140	44	6.7	43	66	20	135	32	18	21	27	1.97
19736812--19737053	98	2.5	98	89	2	344	33	19	20	26	1.97
19737149--19737268	44	2.7	44	84	2	152	27	22	27	22	1.99
19738328--19738368	19	2.2	19	87	12	59	12	2	12	73	1.20
19738968--19739019	20	2.5	21	75	12	54	34	7	1	55	1.39
19739119--19739152	16	2.1	16	88	5	50	0	11	2	85	0.71
19740539--19740578	5	7.8	5	83	5	53	40	0	17	42	1.49
19741136--19741191	24	2.3	24	82	11	78	14	28	21	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19749303--19749342	14	2.9	13	85	7	53	77	0	10	12	0.99
19749301--19749338	17	2.3	16	90	4	58	81	0	7	10	0.87
19749302--19749342	13	2.9	14	85	10	57	78	0	9	12	0.98
19749761--19749822	28	2.1	30	82	5	74	41	16	14	27	1.87
19754587--19754632	22	2.1	23	88	8	69	36	13	6	43	1.69
19769049--19769099	16	3.4	16	68	15	54	37	5	19	37	1.76
19769036--19769123	29	3.0	29	100	0	176	34	6	20	38	1.79
19771257--19771316	31	1.9	31	83	6	77	38	11	8	41	1.72
19772709--19772734	6	4.3	6	100	0	52	34	0	0	65	0.93
19785609--19785638	9	3.3	9	90	0	51	13	0	26	60	1.34
19785599--19785638	18	2.4	17	91	8	64	12	0	30	57	1.36
19785599--19785639	17	2.4	16	84	11	55	14	0	29	56	1.39
19787339--19787381	22	2.0	22	86	8	63	25	27	2	44	1.66
19787894--19787938	22	2.1	22	87	4	65	13	20	26	40	1.89
19788030--19788136	43	2.5	43	87	0	151	30	29	17	21	1.96
19788030--19788148	43	2.8	42	85	2	148	28	28	19	23	1.98
19788515--19788656	66	2.2	66	85	5	189	14	25	19	40	1.89
19788530--19788679	66	2.3	66	83	4	178	16	25	18	39	1.91
19795639--19795723	42	2.0	42	90	0	134	43	15	11	29	1.82
19797227--19797405	66	2.7	65	82	6	202	32	16	22	29	1.95
19797306--19797405	30	3.1	30	68	25	78	33	17	21	29	1.95
19798875--19799004	39	3.4	39	95	1	235	27	9	13	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19799059--19799124	24	2.8	24	97	0	123	28	12	10	48	1.74
19804387--19804459	18	4.1	18	75	21	64	65	1	21	10	1.31
19804507--19804554	21	2.3	21	85	7	62	62	0	25	12	1.30
19806534--19806662	39	3.3	39	97	1	242	28	9	11	50	1.69
19808512--19808723	101	2.1	101	84	1	273	34	14	22	28	1.93
19808547--19808690	33	4.3	33	70	13	96	35	13	21	29	1.92
19808546--19808770	101	2.3	99	82	4	247	34	15	23	26	1.94
19810603--19810642	17	2.4	17	86	0	53	47	0	10	42	1.37
19817403--19817538	40	3.5	40	75	9	127	31	25	18	25	1.97
19818411--19818435	9	2.8	9	100	0	50	0	44	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79