genome.fa.s7.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr3
Parameters: 2 7 7 80 10 50 1000
Length:  26558743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   

This is table  50  of  79  ( 9388 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16811752--16811792	15	2.9	14	89	7	64	80	2	2	14	0.92
16831106--16831137	16	2.0	16	93	0	55	25	15	0	59	1.36
16831255--16831353	46	2.2	43	82	12	119	32	25	19	23	1.97
16831359--16831549	51	3.8	50	74	9	190	30	29	16	23	1.96
16831353--16831575	101	2.2	102	78	9	242	30	30	15	24	1.95
16839295--16839330	18	2.1	18	89	5	56	38	2	0	58	1.13
16839554--16839671	43	2.7	43	81	0	128	30	21	17	30	1.96
16839722--16839835	43	2.7	43	84	0	156	29	13	21	35	1.91
16840382--16840431	16	3.1	16	100	0	100	52	18	12	18	1.75
16842415--16842439	13	1.9	13	100	0	50	48	12	0	40	1.40
16845674--16845704	15	2.0	16	93	6	55	32	6	9	51	1.60
16847942--16848071	49	2.6	49	79	3	136	23	24	20	30	1.99
16848004--16848136	50	2.7	50	79	0	140	19	27	24	28	1.98
16850731--16850756	13	2.0	13	100	0	52	15	0	0	84	0.62
16854488--16854523	18	2.0	18	100	0	72	55	11	16	16	1.68
16855872--16855940	26	2.7	26	88	0	102	28	24	24	21	1.99
16873629--16873667	20	1.9	21	89	5	62	43	5	0	51	1.24
16874317--16874367	26	2.0	26	92	0	84	27	5	23	43	1.77
16875865--16875902	18	2.1	18	85	9	51	28	7	2	60	1.38
16877079--16877120	22	1.9	22	85	0	57	14	16	11	57	1.66
16877349--16877373	12	2.1	12	100	0	50	68	0	0	32	0.90
16878470--16878510	21	2.0	21	85	0	55	51	14	2	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16880380--16880481	42	2.5	41	85	4	134	16	31	26	25	1.97
16882976--16883189	109	2.0	109	99	0	419	19	11	22	45	1.83
16886018--16886094	38	2.0	38	97	0	145	22	20	31	25	1.98
16889611--16889665	19	3.1	17	84	10	74	41	7	14	36	1.74
16893115--16893212	18	5.3	18	70	17	67	64	3	22	10	1.38
16893174--16893232	31	1.9	31	83	13	77	64	3	20	11	1.41
16893647--16893789	76	1.9	76	89	0	223	34	6	20	39	1.78
16898489--16898536	23	2.1	23	96	0	87	39	6	35	18	1.76
16899335--16899368	17	1.9	18	88	5	52	44	5	11	38	1.65
16901356--16901396	14	2.9	15	78	7	50	36	7	14	41	1.74
16904840--16904882	22	1.9	23	81	13	54	51	34	2	11	1.51
16908473--16908507	18	1.9	18	94	0	61	34	5	17	42	1.73
16915275--16915316	20	2.0	20	86	4	57	38	9	9	42	1.70
16920903--16920970	30	2.3	29	82	10	84	32	20	8	38	1.84
16927920--16928112	50	3.9	50	82	2	208	23	29	19	27	1.98
16934708--16934815	52	2.1	53	87	1	155	35	13	25	25	1.93
16934940--16935137	57	3.5	57	79	2	195	31	14	25	28	1.95
16946835--16947079	50	4.9	50	83	3	244	27	20	28	22	1.99
16946782--16947029	100	2.4	104	82	5	290	27	20	29	22	1.99
16946787--16947078	50	5.8	49	82	5	230	27	21	28	23	1.99
16953194--16953380	50	3.7	50	87	2	250	26	21	29	21	1.99
16956224--16956397	50	3.5	50	86	3	233	25	21	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16956224--16956418	100	2.0	100	80	2	221	26	20	29	23	1.99
16956910--16957191	50	5.5	51	78	7	177	28	19	29	23	1.98
16956961--16957155	50	3.9	50	82	4	207	26	20	30	22	1.98
16956961--16957155	100	2.0	100	81	6	234	26	20	30	22	1.98
16960295--16960378	25	3.3	25	77	12	82	32	13	14	40	1.84
16967761--16967806	16	2.7	18	80	12	53	56	2	2	39	1.24
16973050--16974077	199	5.2	199	85	2	1289	34	22	19	23	1.97
16973054--16974051	299	3.3	298	91	1	1495	34	23	18	23	1.96
16973050--16974077	100	10.3	100	84	2	1302	34	22	19	23	1.97
16975626--16975661	18	2.1	16	90	10	54	30	5	2	61	1.33
16983823--16983884	26	2.3	27	86	8	83	41	22	16	19	1.89
16988576--16988773	47	4.2	47	89	0	261	36	20	14	29	1.91
16999032--16999093	32	1.9	32	100	0	124	38	4	20	35	1.74
17011157--17011196	13	3.1	13	88	0	62	35	0	22	42	1.54
17011222--17011255	13	2.7	12	90	9	50	44	2	20	32	1.67
17014610--17014846	50	4.6	50	76	3	188	27	19	27	24	1.99
17017175--17017236	31	2.0	31	100	0	124	54	6	19	19	1.65
17021231--17021287	25	2.3	25	84	6	71	24	17	22	35	1.95
17021267--17021320	25	2.2	25	86	0	72	27	20	22	29	1.98
17029468--17029543	23	3.4	22	75	10	55	34	14	19	31	1.92
17040390--17040456	28	2.4	28	85	5	82	59	7	8	23	1.53
17041489--17041537	24	2.0	24	88	0	71	36	10	6	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17055089--17055216	25	5.1	25	87	1	168	25	22	22	29	1.99
17101672--17101712	17	2.3	19	80	16	52	63	2	2	31	1.20
17102534--17102592	30	2.0	29	83	12	75	50	10	5	33	1.58
17105008--17105148	27	5.2	27	81	6	137	45	20	17	17	1.86
17105008--17105151	54	2.7	53	82	6	173	44	20	17	18	1.87
17105318--17105391	26	2.8	26	85	0	103	14	18	25	40	1.89
17105347--17105397	26	2.0	26	88	0	75	21	21	21	35	1.96
17105502--17105586	30	2.9	29	83	10	93	30	25	20	23	1.98
17105557--17105621	33	2.0	33	84	0	85	29	26	20	24	1.99
17108204--17108318	30	4.0	28	82	10	142	24	26	23	26	2.00
17108945--17108979	13	2.7	13	86	0	52	37	11	11	40	1.77
17109968--17110324	41	8.6	40	75	8	293	22	16	24	36	1.94
17109967--17110324	42	8.6	40	77	8	331	22	16	24	36	1.94
17109967--17110324	84	4.3	84	88	2	510	22	16	24	36	1.94
17110752--17110792	21	2.0	21	90	0	64	65	2	2	29	1.18
17118141--17118192	5	10.4	5	83	8	70	0	46	0	53	1.00
17118867--17118999	27	4.9	27	82	3	160	43	20	19	16	1.88
17119028--17119099	26	2.8	26	86	0	99	13	19	26	40	1.89
17119211--17119296	28	3.0	28	86	6	118	24	26	22	26	2.00
17119207--17119324	30	3.9	30	83	5	132	24	26	22	26	2.00
17119206--17119324	32	3.9	31	78	16	124	24	26	22	26	2.00
17127090--17127117	8	3.5	8	100	0	56	53	21	0	25	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17133703--17133760	21	2.8	21	89	0	89	50	12	5	32	1.62
17134172--17134205	13	2.6	13	85	0	50	32	20	20	26	1.97
17139958--17140011	26	2.1	26	100	0	108	38	25	12	22	1.90
17144081--17144401	41	7.7	41	81	9	341	21	16	26	34	1.95
17144081--17144356	83	3.4	83	92	4	438	22	16	26	35	1.95
17152849--17152895	10	4.6	10	85	12	51	59	6	0	34	1.23
17152907--17152951	19	2.3	20	78	17	51	33	2	0	64	1.06
17153651--17153682	15	2.1	15	94	0	55	28	0	3	68	1.04
17154905--17155018	62	1.9	59	83	8	149	49	5	3	42	1.42
17158954--17158984	4	7.8	4	100	0	62	0	22	0	77	0.77
17161047--17161075	12	2.3	13	94	5	51	10	6	13	68	1.37
17163354--17163393	21	1.9	21	85	10	55	42	10	15	32	1.79
17181244--17181581	50	6.6	50	83	2	370	27	20	28	23	1.99
17188320--17188469	50	3.0	50	95	0	264	24	22	34	20	1.97
17188267--17188469	100	2.0	102	86	5	284	25	21	32	20	1.98
17199156--17199194	17	2.3	17	100	0	78	23	28	12	35	1.91
17205594--17205650	20	2.8	19	78	19	62	36	10	3	49	1.55
17205597--17205650	19	2.7	19	81	18	65	35	11	3	50	1.56
17213617--17213679	25	2.5	24	87	7	72	26	12	7	52	1.67
17213631--17213680	25	2.0	25	96	0	91	28	14	8	50	1.70
17214570--17214639	20	3.5	20	78	3	79	24	22	18	34	1.96
17214554--17214648	20	4.8	20	74	0	73	25	22	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17214554--17214649	40	2.4	40	80	3	113	25	21	15	37	1.93
17215531--17215600	20	3.5	20	78	3	79	24	22	18	34	1.96
17215515--17215609	20	4.8	20	74	0	73	25	22	15	36	1.93
17215515--17215610	40	2.4	40	80	3	113	25	21	15	37	1.93
17214018--17215939	961	2.0	961	99	0	3826	30	13	18	37	1.89
17217088--17217188	51	2.0	51	98	0	193	43	9	8	37	1.69
17220549--17220585	17	2.2	17	90	4	58	24	2	0	72	0.97
17220611--17220706	31	3.2	31	63	25	80	42	8	10	38	1.69
17220606--17220737	58	2.3	58	96	2	239	43	10	9	36	1.71
17220627--17220724	31	3.3	31	65	21	91	40	12	6	40	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79