genome.fa.s7.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  1  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--45	7	6.4	7	97	0	72	35	48	0	15	1.45
6757--6925	7	24.7	7	93	3	256	45	41	2	10	1.52
14286--14493	7	28.9	7	85	6	193	43	50	0	6	1.27
15573--15668	7	13.6	7	92	2	129	37	47	0	14	1.44
15573--15668	21	4.5	21	90	1	147	37	47	0	14	1.44
24967--25072	7	14.9	7	79	10	99	29	60	1	8	1.37
24967--25072	22	5.0	21	76	11	99	29	60	1	8	1.37
24967--25058	29	3.2	28	80	11	98	30	61	0	7	1.23
32731--32849	7	17.7	7	83	5	97	40	43	2	13	1.57
32816--32878	6	10.7	6	79	16	60	55	31	0	12	1.37
38971--38996	12	2.2	12	100	0	52	26	26	7	38	1.83
40066--40409	20	16.4	21	70	11	181	35	56	0	7	1.30
40357--40429	27	2.7	27	85	10	103	38	54	0	6	1.27
40073--40664	7	84.7	7	70	10	264	36	52	1	9	1.43
48798--48957	26	6.5	26	83	6	169	23	13	27	36	1.92
48985--49047	21	2.9	21	74	9	65	46	20	11	22	1.82
51217--51403	101	1.9	102	85	4	263	36	19	17	26	1.94
59610--59652	3	15.0	3	85	9	63	0	32	2	65	1.06
60599--60690	46	2.0	46	97	0	175	41	9	21	27	1.84
61448--61485	18	2.1	18	90	0	58	36	5	44	13	1.66
68651--68675	3	8.3	3	100	0	50	68	0	0	32	0.90
69694--69790	26	3.8	26	70	22	73	53	2	1	43	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69717--69788	24	3.0	24	75	19	69	51	2	1	44	1.24
69755--69827	23	3.2	23	70	18	62	43	1	1	53	1.17
69763--69827	16	4.3	15	74	14	62	41	1	1	55	1.18
69768--69826	31	1.9	30	83	16	77	38	1	1	57	1.19
69702--69828	15	8.5	15	68	20	54	47	1	1	49	1.20
69870--69912	15	2.9	15	79	3	52	55	0	2	41	1.12
69879--69930	25	2.1	24	86	10	70	53	0	1	44	1.11
69916--69967	25	2.0	26	85	3	70	44	0	0	55	0.99
70581--70610	7	4.3	7	100	0	60	30	16	26	26	1.97
70629--70658	3	10.0	3	92	0	51	33	36	0	30	1.58
78313--78354	2	22.0	2	90	9	70	52	0	0	47	1.00
78394--78425	2	16.0	2	93	0	55	53	0	0	46	1.00
78322--78465	71	2.0	71	97	0	270	45	2	11	41	1.51
79387--79413	4	6.8	4	100	0	54	25	0	74	0	0.83
80376--80411	2	18.0	2	94	0	63	0	47	0	52	1.00
90466--90501	2	18.0	2	100	0	72	50	0	0	50	1.00
90472--90613	71	2.0	70	97	1	266	52	5	8	33	1.55
90543--90572	2	15.0	2	92	0	51	46	0	0	53	1.00
95717--95924	104	2.0	104	83	1	265	28	12	17	41	1.86
97245--97271	2	13.5	2	100	0	54	48	0	51	0	1.00
104934--104997	24	2.7	24	80	2	67	37	25	15	21	1.93
108214--108247	2	17.0	2	93	0	59	47	2	50	0	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110418--110456	16	2.4	16	86	0	51	2	12	25	58	1.47
117668--117703	5	7.2	5	96	0	54	55	0	44	0	0.99
117774--117806	4	8.5	4	90	6	50	54	0	27	18	1.44
118332--118358	3	9.0	3	100	0	54	66	0	0	33	0.92
133453--133485	2	16.5	2	100	0	66	48	0	0	51	1.00
140818--140852	13	2.7	13	81	0	52	45	11	5	37	1.64
173775--173827	16	3.4	16	75	17	58	41	0	0	58	0.98
173774--173841	22	3.1	22	79	12	61	42	0	0	57	0.98
174767--174815	16	3.0	16	80	11	55	51	0	0	48	1.00
174836--174891	27	2.3	25	82	14	64	51	1	0	46	1.11
176561--176589	14	2.1	14	100	0	58	27	20	13	37	1.91
179896--179920	2	12.5	2	100	0	50	48	0	52	0	1.00
187040--187070	2	15.5	2	100	0	62	0	51	0	48	1.00
187099--187134	2	18.0	2	94	0	63	0	47	0	52	1.00
203867--203900	2	17.0	2	100	0	68	50	0	0	50	1.00
213890--213927	16	2.3	17	82	17	53	0	18	10	71	1.14
220652--220749	47	2.1	47	100	0	196	34	17	10	37	1.83
224884--224983	40	2.5	39	78	10	105	38	11	11	40	1.76
225235--225286	22	2.3	23	83	3	70	23	7	26	42	1.81
225271--225324	23	2.3	23	90	0	81	38	11	16	33	1.84
225337--225388	21	2.4	21	80	3	59	44	21	9	25	1.82
225337--225399	22	2.9	21	76	9	65	42	20	11	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225841--225887	23	2.0	23	87	0	67	61	6	10	21	1.50
250870--250914	2	22.5	2	100	0	90	51	48	0	0	1.00
252325--252365	22	1.9	21	85	14	57	29	0	2	68	1.03
252346--252410	13	4.9	13	78	10	60	18	6	3	72	1.19
252603--252658	15	4.1	14	75	17	55	25	0	1	73	0.93
253748--253778	13	2.5	12	90	10	53	32	0	0	67	0.91
253747--253792	21	2.3	19	82	10	56	30	0	0	69	0.89
254866--254903	19	2.0	19	89	0	58	28	0	31	39	1.57
255068--255127	30	2.1	29	81	6	68	31	8	21	38	1.83
274511--274624	52	2.2	52	90	3	174	53	7	20	18	1.69
287069--287116	12	3.9	12	74	15	53	31	4	14	50	1.62
294180--294811	314	2.0	309	93	1	1075	35	13	9	41	1.76
309938--309997	30	2.0	30	83	6	77	41	13	0	45	1.43
322638--324255	839	1.9	833	86	2	2289	37	14	12	35	1.84
332691--332751	23	2.7	23	84	0	68	39	32	6	21	1.79
332809--332872	23	2.9	21	74	19	67	40	23	12	23	1.88
332718--332851	68	2.0	68	81	0	160	38	25	11	25	1.89
332809--332915	45	2.4	45	82	3	126	39	26	11	23	1.88
333166--333291	49	2.5	49	75	11	123	39	14	11	34	1.81
333166--333291	50	2.5	50	77	7	141	39	14	11	34	1.81
336758--336803	17	2.6	18	83	13	60	15	6	2	76	1.09
349179--349237	27	2.3	26	80	8	68	71	1	11	15	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361184--361224	19	2.1	20	95	4	75	39	12	14	34	1.84
362833--362890	29	2.0	29	86	0	80	24	10	36	29	1.88
362895--362973	40	2.0	40	89	0	122	35	24	21	18	1.96
369174--369203	14	2.1	14	93	0	51	43	6	3	46	1.46
375650--376224	292	2.0	294	85	3	782	38	12	10	39	1.77
378146--378175	14	2.1	14	93	0	51	43	6	3	46	1.46
380098--380163	31	2.1	31	91	0	105	16	21	18	43	1.87
401100--401124	3	8.3	3	100	0	50	68	0	32	0	0.90
402831--403171	170	2.0	171	90	2	535	34	14	24	26	1.94
414005--414036	2	16.0	2	100	0	64	50	0	0	50	1.00
418744--418773	2	15.0	2	100	0	60	0	50	0	50	1.00
429687--429724	18	2.1	18	100	0	76	23	10	28	36	1.88
432742--432786	21	2.1	21	83	0	54	2	28	0	68	1.01
442767--442927	26	6.3	26	79	5	159	26	11	20	41	1.86
442767--442927	52	3.2	51	78	7	184	26	11	20	41	1.86
442848--442894	22	2.1	23	88	4	69	27	12	25	34	1.92
442752--442982	74	3.1	74	82	2	237	27	12	20	39	1.88
442737--442994	26	10.4	25	71	10	120	27	12	20	39	1.88
442912--443012	48	2.1	48	85	3	132	28	11	21	37	1.89
445441--445572	71	1.9	71	93	0	228	37	15	26	21	1.93
448008--448039	14	2.1	16	88	11	50	34	0	6	59	1.23
456108--456138	15	2.1	15	93	0	53	19	32	9	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458785--458852	22	2.9	23	86	8	93	30	1	0	67	0.99
461118--461158	2	20.5	2	100	0	82	48	0	0	51	1.00
463559--463593	6	5.8	6	96	0	61	20	68	0	11	1.20
491361--491422	20	3.2	20	76	15	67	48	0	0	51	1.00
511385--511756	147	2.5	147	84	4	471	27	20	19	31	1.97
515145--515215	25	2.6	27	80	13	74	32	1	4	61	1.23
522374--522403	15	1.9	16	93	6	53	10	36	0	53	1.35
524054--524078	12	2.1	12	100	0	50	84	0	0	16	0.63
527391--527470	30	2.7	30	90	0	124	25	40	10	25	1.86
534718--534900	57	3.2	57	84	9	221	34	13	16	35	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54