genome.fa.s7.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  9  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4425126--4425199	22	3.3	22	75	14	62	21	4	2	71	1.15
4437404--4437502	17	5.4	18	67	20	62	18	2	5	73	1.10
4437395--4437438	23	1.9	23	86	9	63	18	2	0	79	0.83
4437410--4437442	12	2.8	12	86	13	50	15	0	0	84	0.61
4437393--4437503	58	1.9	57	88	3	161	18	3	4	72	1.17
4439250--4439292	22	2.0	22	90	9	70	11	4	4	79	1.04
4444513--4444548	19	1.9	19	88	5	56	19	19	0	61	1.35
4444699--4444735	8	4.2	9	83	16	51	43	0	0	56	0.99
4444703--4444734	2	16.5	2	93	6	57	46	0	0	53	1.00
4444990--4445050	17	3.2	19	71	15	63	18	4	1	75	1.06
4444989--4445051	13	4.9	13	74	18	60	19	4	1	74	1.08
4445986--4446046	25	2.5	24	86	2	77	6	44	18	31	1.75
4446581--4446659	24	3.3	24	75	6	63	17	3	3	74	1.12
4457949--4457998	1	50.0	1	100	0	100	0	0	0	100	0.00
4459615--4459721	51	2.1	51	84	3	135	40	12	9	38	1.75
4459686--4459746	30	2.0	30	84	6	79	44	9	4	40	1.59
4460504--4460580	29	2.7	29	97	0	145	42	10	11	35	1.76
4461092--4461139	23	2.1	23	100	0	96	56	8	22	12	1.63
4461092--4461145	23	2.4	23	93	3	83	59	7	22	11	1.56
4466562--4466800	119	2.0	119	95	1	435	34	14	7	43	1.74
4479202--4479242	21	2.0	20	86	9	57	43	2	17	36	1.62
4490058--4490108	10	5.0	10	80	15	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4490055--4490100	22	2.1	22	88	8	67	45	0	0	54	0.99
4490062--4490108	22	2.1	22	81	14	53	48	0	0	51	1.00
4491820--4491853	2	17.0	2	100	0	68	0	50	0	50	1.00
4491881--4491925	2	22.5	2	100	0	90	0	51	0	48	1.00
4494446--4494470	7	3.6	7	100	0	50	68	32	0	0	0.90
4508256--4508283	2	14.0	2	100	0	56	0	50	0	50	1.00
4518689--4518731	22	2.0	22	85	0	59	46	25	13	13	1.81
4521556--4521587	3	10.7	3	93	0	55	3	34	0	62	1.11
4524825--4524888	2	33.0	2	84	12	89	48	0	3	48	1.17
4524833--4524887	13	4.0	13	88	11	83	50	0	1	47	1.11
4524832--4524888	15	3.9	15	88	11	91	49	0	1	49	1.11
4525448--4525800	95	3.7	95	82	6	412	37	16	18	27	1.92
4526079--4526483	95	4.3	96	80	6	432	37	17	18	27	1.92
4526077--4526484	189	2.2	190	83	5	513	37	17	17	27	1.93
4526493--4526707	95	2.3	95	79	6	213	45	15	12	26	1.82
4526720--4527124	95	4.3	96	81	5	439	37	16	18	27	1.92
4526267--4526935	226	3.0	224	73	10	601	40	16	15	27	1.89
4526718--4527125	189	2.2	190	84	4	520	37	17	17	27	1.92
4527002--4527414	131	3.2	130	83	0	493	38	16	15	28	1.90
4525235--4527196	641	3.1	641	97	0	3719	39	17	15	27	1.90
4531867--4531964	22	4.5	22	89	1	126	17	5	28	48	1.68
4532061--4532125	22	3.0	22	88	0	94	46	15	10	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4532185--4532243	22	2.8	22	73	21	63	47	18	0	33	1.49
4533813--4533838	2	13.0	2	100	0	52	50	0	50	0	1.00
4536346--4536462	57	2.0	59	91	5	193	26	9	11	52	1.68
4538727--4538753	13	2.1	13	100	0	54	29	25	14	29	1.95
4544131--4544155	6	4.2	6	100	0	50	64	0	0	36	0.94
4554949--4555022	37	2.0	37	87	10	107	29	8	18	43	1.79
4564793--4564825	14	2.3	15	89	10	59	48	0	0	51	1.00
4564842--4564893	23	2.3	23	86	6	70	51	0	3	44	1.19
4564800--4564934	16	8.9	16	68	19	69	46	0	2	50	1.19
4564940--4564977	7	5.6	7	87	6	60	81	0	2	15	0.80
4564931--4564974	13	3.6	12	82	14	54	79	2	2	15	0.93
4564940--4564977	20	1.9	20	100	0	76	81	0	2	15	0.80
4565245--4565379	26	5.2	25	68	15	69	52	0	0	45	1.11
4565264--4565381	18	6.7	18	70	14	68	51	0	0	46	1.12
4565361--4565404	23	1.9	23	81	9	54	47	0	2	50	1.13
4565501--4565542	18	2.3	18	87	0	57	50	7	9	33	1.62
4565508--4565543	18	2.0	18	94	0	63	50	5	8	36	1.56
4573725--4573767	21	2.0	21	100	0	86	44	9	27	18	1.80
4577302--4577384	21	3.8	21	74	16	53	37	10	12	39	1.78
4579435--4579480	22	2.1	22	84	8	58	43	6	4	45	1.49
4580384--4580691	149	2.1	151	84	4	401	38	16	11	33	1.85
4581648--4581714	13	4.9	14	74	20	61	23	5	0	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4581821--4581858	15	2.4	17	86	8	53	23	2	0	73	0.95
4581821--4581859	17	2.5	15	87	8	51	23	2	0	74	0.94
4582112--4582162	16	3.3	15	78	15	59	25	1	0	72	0.95
4582116--4582158	21	2.0	22	81	4	52	20	2	0	76	0.89
4583680--4583725	3	15.3	3	82	17	60	28	0	0	71	0.86
4583672--4583726	11	4.5	13	82	15	64	27	1	0	70	0.97
4583680--4583727	16	3.1	16	82	14	64	27	0	0	72	0.84
4583672--4583726	7	7.9	7	76	15	60	27	1	0	70	0.97
4583793--4583850	20	3.2	20	62	23	54	44	1	17	36	1.59
4583779--4583850	35	2.1	35	100	0	144	47	2	13	36	1.58
4583859--4584154	153	1.9	152	90	4	472	36	12	14	36	1.85
4589235--4589293	24	3.0	18	72	27	57	66	0	0	33	0.92
4589230--4589289	31	1.9	30	87	12	86	60	0	0	40	0.97
4589373--4589428	27	2.0	29	86	6	80	50	0	0	50	1.00
4611932--4612065	67	2.0	67	92	2	225	26	11	14	47	1.79
4622591--4622653	27	2.3	27	81	10	76	1	15	4	77	1.01
4633266--4633311	16	2.8	17	74	16	51	6	34	0	58	1.24
4638474--4638611	24	5.8	24	75	3	116	30	23	15	31	1.95
4638481--4638611	48	2.7	48	78	4	147	30	23	15	30	1.95
4649366--4649400	13	2.7	13	100	0	70	48	22	22	5	1.72
4651425--4651465	21	1.9	21	85	5	55	41	7	26	24	1.81
4662318--4662360	4	10.5	4	80	5	50	48	4	4	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4662739--4662864	64	2.0	63	89	4	191	30	23	3	42	1.72
4667074--4667125	27	1.9	27	88	0	77	38	17	15	28	1.90
4668275--4668347	35	2.2	33	87	9	103	58	13	0	27	1.35
4671053--4671149	4	23.0	4	75	10	68	48	4	2	45	1.33
4671053--4671100	25	1.9	25	83	8	62	50	4	4	41	1.41
4671033--4671114	29	2.8	29	81	7	85	45	6	3	45	1.46
4671070--4671130	29	2.1	28	82	8	70	49	4	1	44	1.33
4671410--4671588	64	2.8	63	80	9	195	30	20	5	43	1.75
4676580--4676650	31	2.3	31	82	2	81	22	12	28	36	1.91
4686486--4686654	84	2.0	84	94	4	297	42	14	18	24	1.87
4687664--4687725	29	2.1	29	82	5	72	46	6	6	40	1.55
4688006--4688159	64	2.4	64	79	6	152	33	23	4	38	1.75
4691381--4691476	38	2.5	39	82	5	122	22	42	16	17	1.88
4691213--4691492	136	2.1	135	91	0	443	24	37	15	22	1.93
4695825--4695873	24	2.0	24	92	0	80	30	14	14	40	1.85
4733263--4733311	24	2.0	24	92	0	80	30	14	14	40	1.85
4735430--4735474	22	2.1	22	84	12	58	31	2	6	60	1.35
4784745--4784848	25	4.0	25	75	17	88	0	36	0	62	1.02
4784762--4784896	30	4.4	30	69	18	98	0	42	0	56	1.04
4784780--4784873	22	4.4	21	68	21	61	0	42	1	56	1.06
4784762--4784885	33	3.9	33	72	13	91	0	42	0	56	1.05
4784767--4784894	63	2.0	66	82	10	158	0	42	0	56	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4784845--4784912	12	5.8	11	74	17	57	0	55	0	44	0.99
4788759--4788809	20	2.5	20	83	3	57	66	0	0	33	0.92
4788774--4788808	18	2.0	17	88	5	52	71	0	0	28	0.86
4788773--4788830	26	2.3	25	79	8	73	65	0	0	34	0.93
4791050--4791093	21	2.2	20	87	4	61	45	25	18	11	1.82
4792942--4793034	46	2.0	46	87	4	134	32	21	9	36	1.86
4803230--4803286	30	1.9	29	85	3	78	43	12	17	26	1.84
4809387--4809426	18	2.2	19	95	4	73	37	0	0	62	0.95
4810110--4810144	17	1.9	19	88	11	56	40	2	0	57	1.14
4810388--4810417	16	1.9	16	93	6	53	30	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54