genome.fa.s7.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  47  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18698412--18698489	37	2.1	37	90	4	122	29	8	37	24	1.86
18710232--18710334	38	2.6	39	82	8	113	23	19	35	21	1.96
18727314--18727377	30	2.1	30	85	0	83	29	15	17	37	1.91
18728098--18728155	20	2.9	21	76	7	66	34	0	20	44	1.52
18734386--18734443	28	2.1	28	96	0	107	31	8	12	48	1.70
18736649--18736676	11	2.5	11	100	0	56	53	14	0	32	1.41
18736670--18736735	22	3.0	22	93	4	107	39	21	9	30	1.84
18739316--18739361	20	2.3	20	88	7	67	32	4	17	45	1.68
18739406--18739458	28	1.9	27	88	3	79	30	18	22	28	1.98
18739406--18739464	28	2.1	28	84	6	75	30	20	23	25	1.98
18747078--18747119	6	6.7	6	88	5	57	78	0	21	0	0.75
18747078--18747121	13	3.4	13	87	9	63	77	0	22	0	0.77
18758093--18758174	37	2.2	37	82	0	92	20	21	19	37	1.94
18765068--18765147	39	2.1	39	88	4	117	27	20	18	33	1.96
18767604--18767630	14	1.9	14	100	0	54	59	11	0	29	1.32
18771719--18771753	2	17.5	2	100	0	70	48	0	0	51	1.00
18780451--18780479	9	3.0	10	90	10	51	41	0	6	51	1.28
18782346--18782385	19	2.2	19	86	4	55	52	5	2	40	1.37
18784180--18784235	14	3.7	15	81	11	53	1	30	1	66	1.12
18785094--18785232	39	3.7	38	84	4	147	22	14	37	25	1.92
18789153--18789190	18	2.1	19	90	5	60	2	10	34	52	1.50
18796496--18796579	2	42.5	2	97	2	161	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18796607--18796677	2	35.0	2	97	2	133	49	0	1	49	1.09
18797263--18797378	55	2.1	55	91	0	187	28	32	14	24	1.94
18800020--18800059	19	2.1	20	81	13	57	50	0	2	47	1.14
18801246--18801334	27	3.3	27	90	1	135	49	15	25	8	1.74
18806779--18806816	19	2.0	19	89	0	58	28	2	28	39	1.70
18812929--18813434	253	2.0	253	91	0	825	29	14	20	35	1.92
18822335--18822376	2	22.0	2	90	9	70	52	0	0	47	1.00
18840130--18840175	21	2.1	22	88	4	67	41	15	17	26	1.88
18841663--18841792	11	10.3	13	71	25	59	68	7	3	20	1.28
18842077--18842134	8	6.6	8	79	16	53	15	1	3	79	0.95
18847407--18847464	25	2.3	24	75	18	64	37	10	24	27	1.88
18859010--18859053	15	2.9	15	90	9	72	29	4	13	52	1.60
18863203--18863240	20	1.9	20	94	0	67	28	2	21	47	1.64
18863293--18863345	28	1.9	27	84	3	70	35	20	16	26	1.94
18866280--18866447	29	5.8	28	81	8	183	39	9	12	38	1.76
18866277--18866436	59	2.8	57	84	4	196	38	9	11	40	1.74
18866274--18866447	28	6.0	27	81	11	177	41	9	12	37	1.74
18867133--18867380	121	2.0	122	95	0	444	27	9	14	48	1.74
18873037--18873123	30	2.9	30	100	0	174	27	9	19	43	1.81
18873617--18873661	23	1.9	24	90	4	74	77	2	20	0	0.87
18877422--18878094	338	2.0	336	94	0	1177	45	13	9	31	1.76
18883102--18883139	19	2.0	19	100	0	76	26	0	31	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18885590--18885635	24	1.9	24	90	0	74	26	4	19	50	1.66
18888193--18888249	19	3.0	19	94	0	105	28	0	29	42	1.56
18896170--18896263	45	2.1	45	91	0	152	46	5	1	46	1.32
18896215--18896293	10	7.9	10	74	19	58	49	2	0	48	1.14
18896209--18896293	9	8.1	11	75	18	58	49	2	0	48	1.14
18896238--18896293	20	2.9	19	86	10	78	50	1	0	48	1.11
18896648--18896672	13	1.9	13	100	0	50	16	24	12	48	1.79
18900325--18900382	22	2.7	23	84	10	77	31	5	20	43	1.74
18927615--18927649	17	2.1	17	94	0	61	31	22	37	8	1.85
18929185--18929232	22	2.2	22	92	0	78	35	10	45	8	1.68
18929271--18929308	15	2.4	17	82	13	53	76	0	18	5	0.97
18929298--18929357	31	1.9	32	86	3	86	46	15	23	15	1.82
18931536--18931560	13	1.9	13	100	0	50	48	8	0	44	1.32
18949497--18949822	181	1.8	180	79	9	378	34	14	16	34	1.90
18954266--18954316	15	3.4	14	84	10	66	49	15	3	31	1.63
18958060--18958086	2	13.5	2	100	0	54	51	0	48	0	1.00
18962132--18962243	34	3.2	35	87	3	147	20	10	30	38	1.87
18962143--18962239	34	2.8	35	88	3	160	21	12	26	39	1.89
18962323--18962360	14	2.8	14	88	4	60	76	0	23	0	0.79
18963586--18963698	41	2.8	41	81	5	156	23	12	37	27	1.90
18964458--18964487	2	15.0	2	92	0	51	46	0	3	50	1.18
18967665--18967824	43	3.7	43	82	0	149	23	19	35	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18967836--18967899	3	22.0	3	76	17	55	25	1	39	34	1.65
18967836--18967899	29	2.2	29	94	0	110	25	1	39	34	1.65
18971789--18972023	92	2.6	91	82	4	283	22	9	28	39	1.86
18971942--18972033	35	2.7	35	79	5	98	27	8	27	36	1.86
18973286--18973437	41	3.8	40	75	15	145	23	15	34	26	1.94
18973439--18973598	54	3.0	53	87	7	216	21	16	40	21	1.91
18976877--18976933	21	2.7	21	97	0	105	29	26	21	22	1.99
18976817--18976990	81	2.1	82	83	8	214	30	25	21	22	1.99
18977342--18977449	43	2.5	43	81	3	128	18	36	20	25	1.95
18979978--18980059	35	2.3	35	82	2	92	35	23	10	30	1.89
18980576--18980709	63	2.1	63	83	5	164	23	15	14	45	1.84
19002745--19002790	20	2.3	20	88	7	67	32	4	17	45	1.68
19002835--19002887	28	1.9	27	88	3	79	30	18	22	28	1.98
19002835--19002893	28	2.1	28	84	6	75	30	20	23	25	1.98
19007009--19007139	36	3.6	36	88	3	190	22	16	34	27	1.95
19007771--19007830	30	2.1	29	81	6	68	31	8	21	38	1.83
19014416--19014472	30	2.0	28	86	6	78	31	7	19	42	1.78
19014692--19014750	26	2.3	26	79	5	66	66	3	28	1	1.18
19024528--19024696	72	2.3	72	81	4	187	24	23	23	28	1.99
19042062--19042086	5	5.0	5	100	0	50	60	0	0	40	0.97
19042590--19042652	22	2.9	22	95	0	108	30	3	22	44	1.68
19070607--19070666	30	2.1	29	81	6	68	31	8	21	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19090882--19091008	43	3.0	42	86	3	173	22	14	35	27	1.93
19091041--19091073	2	16.5	2	100	0	66	48	0	0	51	1.00
19099458--19099511	28	2.0	27	88	3	81	27	18	24	29	1.98
19105210--19105252	20	2.1	21	86	4	61	32	6	20	39	1.80
19108408--19108715	68	4.6	68	83	7	353	36	18	9	35	1.84
19109909--19109953	15	2.9	16	90	9	76	64	17	4	13	1.44
19111525--19111680	57	2.8	55	82	3	204	27	35	12	24	1.91
19119582--19119613	2	16.0	2	100	0	64	50	0	0	50	1.00
19120107--19120297	55	3.6	52	81	5	210	28	37	13	20	1.91
19121155--19121189	16	2.1	17	89	5	54	65	0	25	8	1.21
19124073--19124287	28	7.3	28	78	13	209	40	10	12	36	1.77
19124103--19124171	35	2.0	35	91	0	111	34	11	14	39	1.82
19124073--19124287	63	3.6	57	78	14	204	40	10	12	36	1.77
19124073--19124307	88	2.6	89	81	7	262	41	9	12	35	1.76
19124137--19124283	59	2.5	61	86	8	191	41	10	12	35	1.77
19134936--19135099	31	5.3	31	92	2	267	36	22	17	23	1.94
19135636--19135690	24	2.3	24	81	3	67	25	27	18	29	1.98
19135977--19136035	31	1.9	31	86	6	84	27	15	30	27	1.96
19136120--19136166	16	3.1	16	82	17	64	46	0	10	42	1.38
19136104--19136273	52	3.4	50	82	8	195	51	4	9	35	1.54
19136199--19136265	16	4.2	16	77	9	66	53	2	5	37	1.41
19137806--19138049	31	7.9	31	84	1	301	37	20	18	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19140345--19140419	36	2.1	37	97	2	143	34	18	18	28	1.95
19140235--19140441	31	6.5	32	84	8	228	36	19	19	24	1.95
19151415--19151631	73	2.9	72	77	6	213	41	15	18	24	1.89
19162269--19162324	30	2.0	29	83	13	73	66	5	28	0	1.14
19176963--19177009	22	2.1	22	88	0	67	23	6	19	51	1.70
19180827--19180888	10	6.3	9	78	9	52	75	4	0	17	0.96
19180832--19180888	28	2.0	28	90	6	89	77	3	0	17	0.90
19180832--19180888	29	2.0	27	87	12	80	77	3	0	17	0.90
19180827--19180886	13	4.5	13	73	21	52	76	5	0	16	0.94
19187700--19187759	28	2.1	30	84	6	79	40	18	6	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54