genome.fa.s7.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  45  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17863384--17863512	43	3.0	42	81	9	154	23	31	18	27	1.98
17865787--17865819	15	2.1	16	94	5	59	9	0	6	84	0.76
17870121--17870191	4	17.8	4	78	16	60	0	29	1	69	0.98
17870115--17870189	18	4.1	18	74	15	64	1	32	1	65	1.09
17874151--17874186	11	3.4	11	92	7	65	0	25	8	66	1.19
17881200--17881246	11	4.4	11	89	5	78	0	23	10	65	1.23
17881200--17881246	21	2.2	21	92	3	76	0	23	10	65	1.23
17883604--17883672	36	1.9	36	100	0	138	36	11	10	42	1.75
17887914--17887977	25	2.5	25	84	2	83	26	28	17	28	1.97
17895010--17895048	20	2.0	20	89	0	60	17	35	7	38	1.79
17895827--17895953	43	3.0	43	87	2	175	25	18	33	22	1.96
17895990--17896014	2	12.5	2	100	0	50	48	0	0	52	1.00
17898446--17898485	2	20.0	2	89	0	62	52	2	0	45	1.14
17904498--17904534	19	1.9	19	100	0	74	27	0	29	43	1.55
17914421--17914464	10	4.3	11	83	13	58	0	22	9	68	1.18
17914421--17914464	21	2.2	20	88	12	63	0	22	9	68	1.18
17916512--17916574	7	8.7	7	76	11	56	68	1	30	0	0.99
17916512--17916574	14	4.4	14	86	6	72	68	1	30	0	0.99
17916511--17916552	22	2.0	21	90	4	66	71	0	28	0	0.86
17916512--17916574	29	2.2	29	85	0	81	68	1	30	0	0.99
17921686--17921804	42	2.8	41	83	2	148	18	17	36	27	1.94
17921845--17921884	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17921915--17921987	2	35.5	2	91	5	119	47	1	2	47	1.24
17924842--17924961	38	3.1	38	84	2	150	25	33	15	25	1.95
17928392--17928430	11	3.5	11	82	6	51	25	7	12	53	1.65
17933205--17933307	38	2.6	40	84	3	129	23	16	37	22	1.93
17941753--17941780	9	3.1	9	100	0	56	35	10	10	42	1.74
17954152--17954322	43	4.0	43	88	0	252	25	33	17	22	1.96
17956203--17956242	20	2.0	20	85	0	53	17	30	7	45	1.76
17964894--17964955	26	2.4	26	91	5	99	32	38	4	24	1.76
17964980--17965073	42	2.2	42	90	0	143	21	32	25	20	1.97
17966033--17966381	176	2.0	173	98	0	644	23	17	19	38	1.92
17968783--17968844	26	2.4	26	94	0	106	32	40	4	22	1.75
17968869--17968963	42	2.3	42	88	0	145	24	33	20	22	1.97
17969586--17969764	90	2.0	89	97	0	331	33	24	12	28	1.92
17972518--17972668	55	2.7	56	81	7	191	19	15	40	23	1.91
17979883--17980093	55	3.8	55	85	1	289	26	33	15	24	1.95
17981426--17981467	19	2.2	19	86	0	57	38	7	35	19	1.79
17982089--17982127	19	2.1	19	90	0	60	20	20	15	43	1.88
17982996--17983098	38	2.6	40	87	3	147	20	15	41	22	1.89
17989284--17989402	43	2.8	43	83	2	141	21	35	19	23	1.96
17990184--17990227	19	2.2	21	88	8	65	38	15	22	22	1.92
17993979--17994044	32	2.1	32	91	0	105	30	25	18	25	1.98
18001196--18001663	236	2.0	232	95	2	830	25	22	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18017638--18017679	14	2.8	15	82	10	59	23	0	2	73	0.94
18017631--18017703	30	2.4	31	77	9	78	23	2	5	68	1.24
18029363--18029505	60	2.4	60	89	0	214	32	21	20	24	1.98
18029363--18029529	60	2.8	60	82	7	180	32	20	21	25	1.98
18029462--18029662	90	2.2	90	95	1	359	30	22	22	24	1.99
18029987--18030105	43	2.8	43	89	2	168	19	37	21	21	1.94
18031933--18032124	74	2.6	74	84	2	244	43	16	18	21	1.88
18031936--18032146	74	2.9	74	81	5	239	43	16	16	23	1.88
18038335--18038548	73	2.9	71	75	10	200	38	19	17	24	1.93
18040062--18040111	21	2.4	21	93	0	82	20	22	34	24	1.97
18043601--18043768	42	4.0	42	81	0	174	20	33	20	26	1.97
18043601--18043777	84	2.1	86	81	3	207	21	33	19	25	1.97
18060958--18061005	22	2.2	22	88	0	69	22	6	18	52	1.68
18061736--18061930	72	2.7	71	73	13	191	40	20	17	22	1.92
18063060--18063161	43	2.4	43	81	4	118	23	29	19	27	1.98
18063103--18063275	57	3.0	57	96	0	319	22	32	20	23	1.98
18063218--18063340	42	2.9	42	87	0	174	25	33	20	21	1.97
18069275--18069470	74	2.7	74	81	2	234	42	15	18	23	1.89
18072450--18072558	57	1.9	57	90	7	177	40	16	6	36	1.74
18075269--18075429	42	3.8	42	78	6	164	27	21	30	20	1.98
18082414--18082569	83	1.9	83	87	2	233	23	17	35	23	1.96
18082412--18082576	42	4.0	42	83	3	208	23	19	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18094363--18094405	21	2.0	21	86	0	59	16	27	6	48	1.71
18101604--18101641	20	2.0	20	94	5	69	21	21	15	42	1.89
18104723--18104793	34	2.1	34	86	2	97	26	40	9	22	1.85
18105732--18105773	19	2.3	17	84	15	57	45	7	0	47	1.30
18109620--18109680	14	4.5	13	76	11	52	0	29	0	70	0.88
18109794--18109831	14	2.5	15	87	8	51	28	23	5	42	1.76
18115625--18115776	55	2.8	56	80	10	170	28	36	15	19	1.92
18119017--18119119	38	2.6	39	84	4	136	21	37	18	22	1.94
18127097--18127131	5	7.0	5	86	0	52	37	22	2	37	1.69
18134687--18134827	73	1.9	73	88	2	212	28	19	17	35	1.94
18137192--18137233	21	2.0	20	95	4	75	42	14	4	38	1.66
18137196--18137241	21	2.2	21	92	0	74	45	13	6	34	1.69
18137287--18137390	35	3.0	35	92	0	163	28	31	12	26	1.93
18144000--18144043	23	1.9	23	85	0	61	38	13	15	31	1.87
18144150--18144332	37	4.9	37	86	0	258	20	36	12	31	1.89
18146015--18146044	2	15.0	2	92	0	51	46	0	3	50	1.18
18151230--18151335	37	2.8	37	88	1	140	22	42	4	30	1.74
18155493--18155596	43	2.4	43	82	6	122	24	17	38	20	1.93
18158095--18158146	20	2.7	20	96	3	97	44	0	0	55	0.99
18158942--18158981	20	2.0	20	90	0	62	40	7	22	30	1.81
18163985--18164020	16	2.2	16	95	0	63	19	2	11	66	1.35
18167119--18167154	12	3.2	12	77	22	51	36	16	13	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18168925--18169077	52	2.8	54	73	7	141	18	18	38	23	1.93
18170713--18170832	43	2.8	43	76	2	116	26	18	34	20	1.96
18172962--18173317	160	2.2	160	93	1	624	34	8	24	32	1.86
18172962--18173317	80	4.4	80	90	0	561	34	8	24	32	1.86
18188554--18188588	2	17.5	2	93	0	61	48	0	2	48	1.16
18195773--18195865	43	2.2	43	88	5	136	22	15	37	24	1.93
18196142--18196265	51	2.4	51	84	1	158	23	19	24	33	1.97
18196170--18196278	51	2.1	51	81	0	128	26	18	24	30	1.98
18204223--18204500	142	2.0	141	94	2	495	39	19	13	27	1.89
18204415--18204581	80	2.1	80	98	1	325	38	22	9	29	1.86
18206496--18206534	2	19.5	2	94	0	69	48	0	2	48	1.15
18213834--18213984	52	2.8	52	82	7	169	27	36	15	20	1.93
18216586--18216633	21	2.3	20	79	10	60	14	22	6	56	1.61
18216591--18216631	21	1.9	22	90	5	66	17	24	7	51	1.70
18235874--18235908	18	1.9	18	100	0	70	17	17	14	51	1.77
18251161--18251202	21	2.0	22	85	4	59	16	28	4	50	1.66
18251213--18251248	11	3.4	11	92	7	65	0	25	8	66	1.19
18252168--18252207	21	1.9	21	94	0	71	0	35	0	65	0.93
18252167--18252219	14	3.7	14	81	18	65	0	35	0	64	0.94
18253227--18253264	18	2.1	19	85	5	51	36	10	2	50	1.51
18254190--18254236	18	2.5	20	82	6	62	2	19	2	76	0.99
18255076--18255100	9	2.8	9	100	0	50	36	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18257922--18257959	2	19.0	2	94	0	67	47	0	2	50	1.15
18257996--18258141	42	3.5	42	86	0	184	23	30	21	24	1.99
18272688--18272793	38	2.7	40	82	2	126	23	17	36	21	1.95
18277170--18277208	2	19.0	2	84	5	51	48	2	2	46	1.29
18280539--18280588	7	7.0	7	84	4	64	0	36	0	64	0.94
18280537--18280584	15	3.3	15	83	16	73	0	33	0	66	0.92
18280539--18280586	14	3.4	14	88	5	78	0	33	0	66	0.92
18280527--18280586	29	2.1	29	90	0	93	1	35	1	61	1.16
18280552--18280594	21	2.0	22	81	4	52	0	39	0	60	0.97
18291186--18291307	43	2.8	43	87	4	167	23	18	39	18	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54