genome.fa.s7.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  20  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8865898--8865937	19	2.1	19	90	0	62	42	20	22	15	1.88
8872729--8873094	194	1.9	194	86	2	520	27	21	19	31	1.98
8891185--8891218	16	2.1	16	88	0	50	44	2	0	52	1.16
8896112--8896149	17	2.2	17	90	4	58	47	0	0	52	1.00
8896140--8896185	23	2.0	23	87	8	67	56	0	0	43	0.99
8896569--8896663	27	3.8	24	77	16	61	51	2	1	45	1.20
8896615--8896667	27	2.0	27	100	0	106	49	3	0	47	1.19
8896737--8896786	27	2.0	26	84	11	68	46	4	2	48	1.32
8900624--8900803	69	2.7	66	80	6	209	27	22	15	34	1.94
8913880--8913928	21	2.3	21	82	0	71	24	12	32	30	1.92
8915511--8916057	218	2.5	220	84	3	708	47	4	6	40	1.50
8920771--8920819	22	2.2	22	92	0	80	24	10	24	40	1.86
8920862--8920908	22	2.1	22	92	0	76	23	8	21	46	1.78
8920919--8920978	23	2.6	23	91	0	102	38	28	11	21	1.89
8921038--8921092	21	2.6	21	91	0	92	34	36	16	12	1.87
8921234--8921268	10	3.4	10	92	4	52	62	14	0	22	1.31
8931254--8931285	2	16.0	2	100	0	64	50	0	0	50	1.00
8931283--8931313	4	7.8	4	100	0	62	25	0	22	51	1.48
8936173--8936206	18	1.9	18	88	5	52	11	5	0	82	0.83
8937577--8937705	61	2.1	62	84	4	163	31	9	4	54	1.53
8938563--8938605	19	2.4	17	82	14	59	48	11	13	25	1.77
8938571--8938610	19	2.1	19	100	0	80	47	15	10	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8942801--8942831	2	15.5	2	100	0	62	48	0	0	51	1.00
8944160--8944191	16	1.9	17	93	6	57	68	3	0	28	1.04
8955123--8955201	2	40.0	2	79	12	74	41	2	2	53	1.28
8964313--8964347	15	2.3	15	90	0	52	68	0	0	31	0.90
8973277--8973313	3	12.3	3	100	0	74	32	0	0	67	0.91
8978613--8978649	2	18.5	2	100	0	74	48	0	0	51	1.00
8979284--8979413	35	3.8	34	75	5	127	28	13	22	35	1.92
8984742--8984797	17	3.4	17	69	16	55	16	10	25	48	1.78
8984743--8984841	32	3.1	32	89	2	146	18	9	22	50	1.74
8988291--8988338	21	2.3	21	81	0	60	37	8	18	35	1.81
8993507--8993547	21	2.0	21	95	0	73	41	36	7	14	1.74
9015856--9015882	2	13.5	2	100	0	54	48	0	0	51	1.00
9015906--9016027	42	2.9	42	83	1	118	22	31	18	27	1.97
9015931--9016027	42	2.3	42	84	5	124	22	29	20	26	1.99
9027835--9027874	21	2.0	21	85	5	55	37	2	7	52	1.43
9029530--9029613	41	2.0	41	100	0	168	33	10	21	34	1.88
9030647--9030713	28	2.4	28	85	2	82	34	20	14	29	1.93
9030836--9030886	24	2.1	25	92	3	86	39	17	5	37	1.74
9030860--9030916	30	1.9	29	85	3	78	42	17	8	31	1.80
9042485--9042641	72	2.2	71	85	3	199	29	17	19	34	1.94
9042505--9042680	72	2.4	72	79	0	199	29	18	17	34	1.94
9044628--9044685	25	2.3	26	82	8	75	48	3	0	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9048717--9048873	63	2.5	63	89	2	235	24	19	32	24	1.97
9051995--9052050	15	3.7	15	72	9	51	14	35	5	44	1.68
9059387--9059510	63	2.0	63	96	0	230	33	13	15	37	1.87
9060737--9060793	21	2.7	21	97	0	105	31	21	17	29	1.96
9060665--9060836	93	1.9	92	81	3	211	29	18	18	33	1.95
9060975--9061027	21	2.6	21	87	3	72	28	16	15	39	1.89
9062597--9062911	27	11.7	27	71	5	116	18	31	20	28	1.97
9062577--9062844	54	5.0	53	68	7	137	17	32	21	27	1.96
9062595--9062828	81	2.9	81	73	8	215	17	33	21	26	1.96
9062929--9063023	26	3.7	26	78	0	109	21	31	21	26	1.98
9063151--9063205	2	27.5	2	96	0	101	50	0	0	49	1.00
9064278--9064335	25	2.3	26	82	8	75	48	3	0	48	1.18
9065364--9065421	25	2.3	26	82	8	75	48	3	0	48	1.18
9067614--9067738	41	3.0	41	100	0	250	33	10	21	34	1.88
9068965--9069017	24	2.2	24	79	0	61	39	16	11	32	1.85
9073407--9073449	2	21.5	2	100	0	86	51	0	0	48	1.00
9073468--9073514	2	23.5	2	100	0	94	51	0	0	48	1.00
9078361--9078484	63	2.0	63	96	0	230	33	13	15	37	1.87
9082503--9082561	31	1.9	31	96	0	109	42	20	22	15	1.89
9085333--9085358	6	4.3	6	100	0	52	0	15	50	34	1.45
9095275--9095336	25	2.5	25	83	0	79	45	8	14	32	1.74
9095329--9095375	23	2.0	23	91	0	76	19	6	12	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9099826--9099881	25	2.2	25	83	0	67	48	8	10	32	1.69
9099880--9099926	23	2.0	23	95	0	85	17	10	12	59	1.60
9104100--9104144	21	2.1	21	84	8	56	66	0	0	33	0.92
9104091--9104160	27	2.6	28	84	13	94	62	0	0	37	0.95
9105322--9105396	29	2.5	30	76	8	82	56	0	1	42	1.08
9115290--9115356	28	2.4	28	97	0	125	35	13	5	44	1.68
9132788--9132952	85	1.9	85	87	7	246	33	15	10	40	1.81
9145864--9145944	22	3.6	22	74	11	67	40	6	4	48	1.50
9147846--9147891	23	2.0	23	91	8	76	30	0	17	52	1.45
9148120--9148335	27	7.9	27	76	6	168	34	10	13	41	1.79
9148121--9148360	55	4.4	54	77	8	161	35	10	14	40	1.80
9148645--9148692	16	3.0	16	79	8	53	56	2	22	18	1.52
9149514--9149572	14	4.1	15	76	20	54	50	6	0	42	1.28
9150742--9150798	22	2.6	22	82	0	69	40	8	5	45	1.58
9151346--9151373	5	5.6	5	100	0	56	21	0	0	78	0.75
9152720--9152764	23	2.0	23	90	0	72	28	4	24	42	1.74
9153030--9153191	55	3.0	55	82	7	190	35	10	14	39	1.80
9153030--9153233	27	7.6	27	79	8	175	35	11	14	39	1.82
9153030--9153208	82	2.2	79	83	4	216	35	11	14	39	1.82
9153059--9153233	82	2.1	82	81	4	201	34	12	14	38	1.84
9153060--9153233	55	3.2	55	80	4	138	33	12	14	39	1.84
9154108--9154269	84	2.0	82	97	1	297	46	7	8	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9154251--9154308	14	4.2	13	74	10	53	53	1	0	44	1.10
9154389--9154530	74	1.9	74	89	0	221	46	8	4	40	1.54
9156344--9156368	12	2.1	12	100	0	50	24	28	32	16	1.96
9159610--9159658	22	2.2	22	85	3	62	24	2	18	55	1.53
9164384--9164417	12	2.8	12	86	0	50	35	29	17	17	1.93
9169275--9169358	22	3.8	22	76	4	71	40	3	5	50	1.44
9171264--9171330	23	2.7	24	84	15	84	32	1	19	46	1.59
9185604--9185646	15	2.7	16	82	17	54	53	4	0	41	1.21
9191682--9191727	21	2.1	22	88	4	67	41	6	10	41	1.66
9191695--9191742	21	2.2	22	85	7	62	35	6	10	47	1.63
9193172--9193202	2	15.5	2	100	0	62	51	48	0	0	1.00
9195522--9195639	57	2.1	57	91	3	193	16	19	12	51	1.75
9196047--9196084	19	2.0	19	89	0	58	28	2	28	39	1.70
9199755--9199832	22	3.5	22	76	0	84	51	32	2	14	1.55
9200115--9200139	2	12.5	2	100	0	50	0	48	0	52	1.00
9201035--9201080	21	2.2	20	84	3	56	41	32	26	0	1.56
9201423--9201489	2	34.0	2	88	8	102	46	0	1	50	1.10
9205059--9205112	28	1.9	29	92	7	94	59	3	7	29	1.42
9206190--9206247	29	2.1	28	87	6	82	43	12	10	34	1.76
9206224--9206287	32	2.0	32	90	0	101	31	10	6	51	1.62
9206253--9206339	26	3.3	26	74	7	77	31	9	10	49	1.68
9206302--9206369	28	2.4	28	87	0	100	29	10	8	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9206688--9206739	2	26.5	2	88	3	79	50	1	1	46	1.23
9212094--9212146	22	2.5	20	74	17	52	35	5	13	45	1.67
9214638--9214811	73	2.4	73	80	1	179	21	21	16	39	1.92
9217658--9217713	28	2.0	28	93	3	96	32	5	21	41	1.76
9218075--9218154	37	2.2	37	83	0	97	36	10	40	13	1.79
9218091--9218156	21	3.4	20	74	20	68	36	9	37	16	1.81
9218110--9218141	16	2.0	16	93	0	55	37	3	43	15	1.63
9221392--9221435	23	1.9	23	90	0	70	38	29	13	18	1.89
9221507--9221584	23	3.4	22	80	7	84	32	21	17	28	1.96
9224686--9224735	23	2.2	23	92	0	82	30	24	16	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54