genome.fa.s7.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  46  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18291293--18291355	20	3.2	20	90	2	101	25	3	41	30	1.71
18292467--18292837	54	6.9	54	89	0	526	20	15	38	25	1.91
18297707--18297731	12	2.1	12	100	0	50	44	24	0	32	1.54
18300883--18301001	43	2.8	43	89	2	177	21	21	37	19	1.94
18300893--18301014	43	2.8	43	88	2	174	22	18	39	18	1.92
18301000--18301062	20	3.2	20	90	2	101	25	3	41	30	1.71
18310592--18310697	38	2.8	37	78	12	124	20	13	41	24	1.88
18314763--18314882	43	2.8	42	85	7	161	23	15	39	21	1.92
18314892--18314925	8	4.2	8	88	0	50	41	0	11	47	1.40
18315211--18315361	60	2.5	61	83	3	180	23	17	21	37	1.94
18317136--18317198	31	2.0	31	100	0	126	42	9	12	34	1.76
18317203--18317250	21	2.3	20	75	10	51	16	22	4	56	1.58
18317261--18317307	11	4.4	11	83	5	69	2	25	8	63	1.34
18317261--18317307	21	2.2	21	88	3	67	2	25	8	63	1.34
18338943--18339015	37	2.0	37	86	0	101	23	35	9	31	1.87
18345786--18346009	43	5.4	40	81	6	232	28	17	30	23	1.97
18345809--18346009	83	2.4	83	90	0	312	29	17	30	22	1.97
18349504--18349578	38	2.0	38	94	0	132	22	13	36	28	1.92
18352138--18352181	18	2.4	18	96	0	79	36	27	11	25	1.90
18359707--18359825	43	2.8	43	87	1	168	25	19	34	21	1.96
18359707--18359892	43	4.1	43	76	16	160	24	20	33	21	1.97
18359784--18359892	54	2.0	54	90	0	173	24	21	32	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18362403--18362454	28	1.9	27	84	7	70	26	21	21	30	1.98
18362500--18362545	20	2.3	20	96	0	83	45	21	4	28	1.71
18370286--18370337	28	1.9	27	84	7	70	28	21	19	30	1.97
18370383--18370428	20	2.3	20	96	0	83	45	21	4	28	1.71
18370991--18371063	26	2.8	26	97	0	137	23	2	41	32	1.69
18372373--18372475	40	2.6	39	83	8	122	25	18	35	20	1.95
18382072--18382195	43	2.9	43	80	4	144	26	15	34	23	1.94
18382482--18382532	21	2.4	21	100	0	102	35	25	21	17	1.95
18397316--18397361	11	4.3	11	88	5	76	67	8	23	0	1.18
18397316--18397361	21	2.1	22	92	4	76	67	8	23	0	1.18
18398801--18399723	463	2.0	462	94	0	1612	29	16	16	37	1.90
18404723--18404769	11	4.4	11	89	5	78	65	10	23	0	1.23
18404723--18404769	21	2.2	21	92	3	76	65	10	23	0	1.23
18404780--18404821	21	2.0	22	90	4	68	50	7	26	16	1.71
18404781--18404827	21	2.2	21	84	3	58	55	8	21	14	1.66
18408451--18408497	21	2.2	22	85	11	62	63	10	23	2	1.37
18414207--18414309	43	2.4	43	88	0	143	25	19	34	20	1.96
18415106--18415163	28	2.0	30	83	6	75	32	22	17	27	1.96
18415362--18415404	19	2.2	19	87	8	59	67	9	23	0	1.19
18419504--18419635	43	3.1	43	83	0	156	25	20	34	19	1.96
18424215--18424407	29	6.7	29	80	9	241	37	10	12	38	1.79
18424214--18424417	88	2.3	88	79	10	240	39	10	12	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18430633--18430670	19	2.0	19	94	0	67	42	28	0	28	1.56
18431475--18431525	14	3.4	15	84	15	54	1	27	1	68	1.11
18432410--18432465	23	2.4	23	93	0	94	8	19	48	23	1.77
18434428--18434589	43	3.8	43	81	3	182	23	17	35	23	1.96
18434597--18434659	3	21.7	3	76	12	51	26	1	39	31	1.66
18434588--18434654	23	3.1	23	85	12	97	25	2	40	31	1.71
18434600--18434653	20	2.8	20	88	2	83	25	1	40	31	1.66
18442281--18442529	133	1.9	133	82	5	315	30	29	5	33	1.81
18445228--18445311	35	2.4	35	85	0	105	44	4	10	40	1.60
18445263--18445357	35	2.7	35	86	0	118	44	6	12	36	1.68
18446309--18446349	21	1.9	22	90	5	66	51	7	24	17	1.70
18446309--18446353	20	2.2	21	84	11	58	55	6	22	15	1.63
18446308--18446355	21	2.2	21	81	3	60	58	6	20	14	1.58
18449426--18449772	179	1.9	179	87	5	515	38	11	16	33	1.84
18451651--18451714	32	2.0	32	93	0	110	29	29	10	29	1.91
18452766--18452871	35	3.1	35	75	1	106	30	31	13	25	1.93
18464376--18464499	42	3.0	42	92	0	212	21	21	33	22	1.97
18464734--18464795	26	2.4	26	91	0	97	25	3	38	32	1.72
18468523--18468565	22	2.0	22	90	0	68	39	23	9	27	1.85
18476444--18476482	20	2.0	20	94	0	69	38	10	30	20	1.86
18478396--18478420	13	1.9	13	100	0	50	40	0	20	40	1.52
18489417--18489469	28	1.9	27	88	3	79	32	22	15	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18489512--18489557	20	2.3	20	96	0	83	45	21	4	28	1.71
18501041--18501085	20	2.2	20	84	0	54	4	17	8	68	1.32
18502585--18502722	36	3.9	34	82	6	141	34	5	13	46	1.67
18506352--18506469	60	2.0	60	86	1	166	23	33	16	25	1.96
18507158--18507318	62	2.5	64	84	9	202	3	25	4	67	1.24
18507105--18507268	74	2.2	76	82	4	199	3	30	2	63	1.24
18507157--18507254	6	15.8	6	78	8	72	2	24	2	71	1.07
18508453--18508633	86	2.1	86	95	0	326	31	11	19	37	1.87
18511148--18511185	19	2.0	19	94	0	67	28	0	28	42	1.56
18511351--18511410	30	2.1	29	84	6	77	31	10	20	38	1.85
18512595--18512629	16	2.2	16	89	0	52	40	2	8	48	1.49
18513851--18513901	15	3.4	14	84	10	66	33	3	13	49	1.61
18515894--18515931	19	2.0	19	89	0	58	28	2	26	42	1.69
18516097--18516156	30	2.1	29	81	6	68	30	8	23	38	1.84
18519898--18520014	61	1.9	62	91	1	191	59	6	19	13	1.56
18519908--18520050	61	2.3	61	81	10	150	64	6	18	10	1.46
18519963--18520091	51	2.5	51	87	6	190	65	5	17	12	1.44
18521317--18521410	40	2.3	40	90	3	145	34	14	23	27	1.94
18521379--18521506	49	2.6	48	82	6	152	35	12	21	29	1.91
18521386--18521506	48	2.5	48	84	6	145	36	13	20	29	1.91
18523656--18523698	20	2.2	20	83	8	52	23	4	6	65	1.37
18532913--18532955	20	2.2	20	83	8	52	23	4	6	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18541035--18541072	19	2.0	19	89	0	58	31	26	21	21	1.98
18542963--18543000	19	2.0	19	89	0	58	28	2	28	39	1.70
18549196--18549220	13	1.9	13	100	0	50	44	0	8	48	1.32
18550940--18551109	28	5.9	28	84	6	214	39	11	13	35	1.80
18550940--18551109	59	2.9	59	85	5	222	39	11	13	35	1.80
18550947--18551109	87	1.9	85	85	2	227	39	11	13	36	1.80
18560552--18560613	26	2.4	26	94	0	106	32	40	3	24	1.71
18578072--18578174	38	2.6	40	78	3	120	21	15	39	23	1.91
18580477--18580514	20	1.9	19	89	5	58	42	0	15	42	1.47
18592310--18592371	29	2.2	28	82	2	70	22	38	20	17	1.93
18592595--18592645	20	2.5	20	87	0	57	33	41	23	1	1.66
18593066--18593110	23	2.0	23	91	4	74	4	15	44	35	1.67
18596214--18596319	38	2.7	38	82	7	124	23	21	35	18	1.95
18596772--18596836	30	2.2	30	84	10	82	27	7	18	46	1.76
18608452--18608493	20	2.1	20	100	0	84	33	9	4	52	1.55
18614018--18614165	32	4.8	32	83	13	204	22	24	48	4	1.68
18614083--18614177	24	3.6	24	78	20	109	24	22	48	5	1.71
18614051--18614177	56	2.3	56	98	0	245	23	22	48	4	1.69
18617128--18617197	21	3.3	21	74	7	79	52	1	0	45	1.09
18619633--18619668	9	4.0	9	89	10	56	22	0	0	77	0.76
18620025--18620061	19	2.0	19	89	5	58	32	2	24	40	1.69
18623496--18623606	55	2.1	53	96	3	204	30	14	15	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18623806--18623909	38	2.6	40	81	4	131	22	15	40	22	1.91
18639305--18639349	21	2.2	20	84	11	56	57	4	22	15	1.56
18644341--18644441	38	2.5	40	84	4	125	18	14	43	22	1.87
18663244--18663279	19	1.9	18	94	5	63	25	0	30	44	1.54
18668719--18669290	286	2.0	286	99	0	1128	35	12	10	41	1.77
18669277--18669348	2	36.5	2	85	2	101	50	5	0	44	1.25
18681580--18681781	101	2.0	101	87	2	291	26	10	10	52	1.68
18681958--18681992	16	2.2	16	90	5	54	37	0	2	60	1.12
18694193--18694223	14	2.2	14	94	0	53	38	6	19	35	1.77
18694492--18694562	22	3.2	23	76	15	76	43	0	4	52	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54