genome.fa.s7.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  50  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19708111--19708255	71	2.0	70	100	0	272	42	20	1	35	1.60
19709362--19709410	18	2.7	18	76	17	57	59	2	0	38	1.09
19715663--19715772	23	4.8	23	78	0	94	18	15	32	33	1.92
19717285--19717319	18	2.0	17	88	5	52	82	0	2	14	0.77
19723033--19723089	29	2.0	29	85	0	78	24	10	15	49	1.76
19726654--19726756	38	2.6	39	87	3	145	21	18	38	21	1.93
19730986--19731028	20	2.2	20	100	0	86	9	13	9	67	1.42
19731076--19731134	24	2.5	22	75	19	57	0	23	6	69	1.12
19731364--19731394	16	1.9	16	93	0	53	3	16	0	80	0.83
19732242--19732284	19	2.3	18	84	4	59	41	4	0	53	1.21
19736159--19736188	2	15.0	2	100	0	60	50	0	0	50	1.00
19737767--19737849	35	2.3	35	83	6	105	30	40	9	19	1.83
19739764--19739801	19	2.0	19	94	0	67	42	28	0	28	1.56
19740911--19740945	6	6.2	6	87	12	56	0	14	0	85	0.59
19740911--19740942	16	2.0	16	100	0	64	0	12	0	87	0.54
19741796--19741838	19	2.3	18	80	4	50	39	4	0	55	1.20
19743621--19743660	20	2.0	20	85	0	53	17	35	7	40	1.78
19744517--19744587	37	1.9	37	91	2	99	18	15	39	26	1.90
19744461--19744796	104	3.3	103	89	1	503	18	12	42	26	1.86
19744871--19744899	2	15.0	2	92	7	51	48	0	0	51	1.00
19748720--19748772	28	1.9	27	88	3	79	28	22	18	30	1.98
19748817--19748862	20	2.3	20	96	0	83	45	21	4	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19749614--19749638	13	1.9	13	100	0	50	48	8	0	44	1.32
19759488--19759544	27	2.1	28	83	3	71	40	19	15	24	1.90
19762824--19762863	20	2.0	20	90	0	62	17	32	7	42	1.77
19763723--19764275	104	5.3	104	89	0	831	21	11	40	26	1.87
19763723--19764275	207	2.7	208	90	0	867	21	11	40	26	1.87
19764210--19764280	37	2.0	35	88	5	106	19	15	36	28	1.92
19764936--19764973	19	2.0	19	94	0	67	28	0	31	39	1.57
19767413--19767465	15	3.6	14	82	12	70	26	1	18	52	1.56
19769501--19769538	19	2.0	19	100	0	76	26	0	31	42	1.56
19770763--19770787	13	1.9	13	100	0	50	44	0	8	48	1.32
19772357--19772394	19	2.0	19	100	0	76	26	0	31	42	1.56
19773618--19773642	13	1.9	13	100	0	50	44	0	8	48	1.32
19776506--19776549	15	2.8	16	83	10	56	2	31	0	65	1.05
19783843--19783868	2	13.0	2	100	0	52	50	0	0	50	1.00
19784716--19784751	16	2.2	16	95	0	63	11	2	19	66	1.35
19785931--19786112	68	2.7	68	77	5	197	37	9	18	34	1.84
19786623--19786674	20	2.6	20	78	0	50	40	9	17	32	1.82
19796628--19796787	80	2.0	80	98	0	311	35	21	10	33	1.87
19800086--19800115	16	1.9	16	93	6	53	60	20	0	20	1.37
19803216--19803249	10	3.4	10	95	0	59	50	8	38	2	1.49
19804618--19804760	35	4.1	35	87	1	189	24	9	37	28	1.86
19804628--19804764	69	2.0	70	88	1	204	24	9	38	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19804631--19804788	35	4.5	35	83	1	156	24	12	36	27	1.90
19807871--19807930	28	2.1	30	84	6	79	31	6	20	41	1.78
19815437--19815473	2	18.5	2	100	0	74	51	48	0	0	1.00
19815513--19815648	43	3.2	43	81	9	179	24	34	17	23	1.96
19837304--19837473	63	2.7	63	87	1	236	26	32	17	23	1.96
19838537--19838586	13	3.6	14	76	15	50	76	0	22	2	0.89
19842353--19842609	139	1.8	139	80	1	309	39	21	17	21	1.92
19849801--19849907	42	2.5	42	81	1	115	22	18	37	21	1.94
19849923--19849976	23	2.3	23	90	0	81	25	3	38	31	1.74
19854972--19855047	2	38.5	2	92	2	109	43	0	3	51	1.20
19855046--19855088	20	2.1	21	86	4	61	32	2	23	41	1.67
19855091--19855219	42	3.1	42	83	4	136	25	20	31	22	1.98
19865490--19865515	2	13.0	2	100	0	52	50	0	0	50	1.00
19865514--19865556	20	2.1	21	86	4	61	32	2	23	41	1.67
19865566--19865688	42	2.9	42	88	1	183	26	17	33	22	1.96
19865957--19866008	21	2.5	21	90	0	77	34	25	21	19	1.96
19867803--19867897	28	3.4	27	82	7	111	22	17	9	50	1.75
19868975--19869452	240	2.0	239	88	2	717	27	17	21	33	1.96
19873562--19873610	23	2.1	23	100	0	98	32	26	8	32	1.86
19878767--19878795	2	14.5	2	100	0	58	48	0	0	51	1.00
19901482--19901506	12	2.1	12	100	0	50	36	0	0	64	0.94
19902039--19902075	17	2.2	17	95	0	65	10	18	10	59	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19902047--19902083	17	2.2	17	90	0	56	10	24	10	54	1.67
19902692--19902771	40	2.0	41	90	2	126	36	20	23	20	1.95
19906310--19906346	2	18.5	2	100	0	74	51	0	0	48	1.00
19906360--19906457	42	2.3	42	92	0	160	24	22	32	20	1.98
19909414--19909458	11	4.4	11	78	13	51	64	11	24	0	1.26
19910351--19910392	15	2.6	17	81	11	52	45	2	7	45	1.44
19915911--19916078	42	4.0	42	87	0	219	23	20	33	22	1.97
19921486--19921615	42	3.1	42	82	1	170	19	34	19	26	1.95
19924517--19924564	20	2.3	20	85	7	60	0	33	0	66	0.92
19931139--19931490	175	2.0	174	95	0	632	21	20	18	39	1.92
19949362--19949446	43	2.0	43	88	0	125	21	34	20	24	1.97
19959512--19959547	18	2.1	18	89	5	56	33	36	0	30	1.58
19960330--19960389	30	2.1	29	84	6	77	30	10	21	38	1.86
19972051--19972092	21	2.0	22	85	4	59	52	2	23	21	1.59
19976785--19976895	32	3.4	31	73	16	98	35	27	13	24	1.93
19976803--19976913	35	3.3	32	80	12	125	32	25	13	28	1.94
19976783--19976933	67	2.3	67	84	4	207	37	26	13	23	1.91
19978484--19979271	253	3.1	247	77	9	772	47	6	12	32	1.68
19985520--19985579	30	2.1	30	84	6	79	40	21	6	31	1.79
19992046--19992091	20	2.3	20	92	0	74	30	4	19	45	1.70
19997493--19997539	24	2.0	24	82	0	58	55	17	8	19	1.67
20002990--20003027	20	1.9	20	100	0	76	28	5	21	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20012772--20012815	22	2.0	22	95	0	79	45	20	4	29	1.71
20018457--20018564	55	2.0	53	90	3	171	51	3	12	31	1.57
20019336--20019370	16	2.1	17	89	5	54	40	34	2	22	1.69
20021492--20021554	3	21.0	3	90	0	81	26	31	6	34	1.82
20023430--20023458	12	2.3	13	94	5	51	20	0	6	72	1.07
20023432--20023476	22	2.0	22	91	0	72	24	0	8	66	1.20
20023407--20023469	11	5.7	11	74	7	56	19	3	6	71	1.21
20023516--20023548	5	6.6	5	86	13	50	81	0	0	18	0.68
20024909--20024988	42	1.9	42	92	0	133	26	16	15	42	1.87
20024909--20024985	21	3.7	21	89	0	118	25	16	15	41	1.88
20033655--20033699	15	2.9	15	80	9	54	71	0	26	2	0.98
20033656--20033716	27	2.2	28	80	13	74	75	0	22	1	0.89
20033653--20033709	16	3.9	15	77	22	59	71	0	26	1	0.95
20033642--20033720	37	2.2	36	80	13	90	74	0	20	5	1.00
20038028--20038082	24	2.3	24	100	0	110	27	29	7	36	1.84
20038819--20038852	12	2.8	12	81	0	50	17	17	2	61	1.46
20042976--20043000	7	3.6	7	100	0	50	40	28	0	32	1.57
20044475--20044529	24	2.3	23	78	9	58	65	5	0	29	1.15
20045148--20045183	18	1.9	19	88	5	56	52	13	11	22	1.72
20049502--20049541	20	2.0	20	85	0	53	40	25	0	35	1.56
20054721--20055492	47	16.2	47	77	7	612	27	13	19	38	1.90
20054722--20055467	96	7.9	93	78	6	599	27	14	19	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20054722--20055492	142	5.4	141	78	8	636	27	13	19	38	1.90
20055597--20055737	49	3.0	49	78	12	170	27	8	19	43	1.80
20063358--20063436	40	2.0	40	92	0	131	35	24	22	17	1.95
20066055--20066132	40	2.0	40	92	0	129	41	23	17	17	1.91
20074090--20074181	2	44.0	2	92	4	114	48	5	0	44	1.25
20092105--20092224	52	2.3	52	98	0	231	37	12	12	37	1.81
20095574--20095697	30	4.2	30	76	13	98	34	10	12	41	1.78
20095582--20095745	59	2.8	58	82	4	197	38	12	10	38	1.78
20095582--20095742	29	5.5	28	81	7	169	39	12	10	37	1.78
20098068--20098219	42	3.6	42	80	9	184	27	21	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54