genome.fa.s7.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  14  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6431402--6431448	24	2.0	24	82	0	58	6	44	14	34	1.71
6431576--6431636	24	2.5	24	91	0	95	27	19	32	19	1.96
6433205--6433254	26	1.9	26	91	0	82	26	14	4	56	1.56
6435658--6435712	23	2.4	23	84	0	65	23	14	30	30	1.94
6441327--6441601	111	2.5	112	86	1	365	44	25	12	17	1.83
6442231--6442288	30	1.9	30	100	0	116	29	29	17	24	1.97
6442889--6443076	48	3.8	47	72	12	153	37	25	12	25	1.91
6442810--6443073	102	2.6	103	83	3	318	38	24	12	25	1.90
6444175--6444225	20	2.7	19	80	16	54	47	1	3	47	1.32
6444164--6444216	20	2.5	22	79	14	58	45	1	1	50	1.23
6445209--6445270	14	4.3	15	73	20	60	74	0	0	25	0.82
6445609--6445727	59	2.0	59	88	3	177	25	26	12	35	1.92
6446560--6446593	16	2.1	16	88	5	50	32	14	2	50	1.58
6448171--6448333	80	2.1	79	95	3	292	51	1	12	33	1.50
6448307--6448335	2	14.5	2	100	0	58	51	0	0	48	1.00
6449228--6449258	13	2.4	13	94	0	53	80	3	0	16	0.83
6450110--6450164	27	2.1	26	82	3	65	41	5	43	9	1.59
6453414--6453472	23	2.5	24	82	17	72	27	1	0	71	0.96
6453437--6453483	23	2.0	23	84	8	60	25	4	2	68	1.19
6468146--6468234	46	1.9	46	90	0	142	32	26	8	31	1.87
6478666--6478716	17	2.9	17	80	8	50	45	5	1	47	1.38
6478731--6478769	16	2.4	17	83	16	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6478773--6478801	2	14.5	2	100	0	58	51	0	0	48	1.00
6479577--6479606	15	1.9	16	93	6	53	56	0	0	43	0.99
6482837--6482898	14	4.4	15	68	15	51	20	1	14	62	1.39
6482837--6482898	19	3.1	19	69	13	61	20	1	14	62	1.39
6482776--6482974	40	4.9	41	79	7	174	22	2	16	59	1.47
6482788--6482974	80	2.3	83	82	7	222	21	2	17	59	1.48
6486481--6486552	32	2.2	32	100	0	144	44	2	30	22	1.67
6492243--6492515	143	1.9	143	90	0	429	40	12	11	35	1.80
6494895--6494942	5	9.6	5	88	0	69	2	16	0	81	0.79
6494895--6494955	20	3.1	20	79	6	72	1	21	0	77	0.86
6495277--6495358	34	2.4	34	87	0	110	40	31	10	17	1.84
6498140--6499011	450	1.9	450	95	0	1593	31	14	13	39	1.85
6499410--6499446	3	12.3	3	88	0	56	67	27	0	5	1.12
6499410--6499446	15	2.5	15	100	0	74	67	27	0	5	1.12
6502733--6502775	21	2.0	21	90	4	68	6	11	6	74	1.21
6504991--6505064	22	3.5	21	73	12	55	20	2	2	74	1.07
6504992--6505054	33	1.9	32	87	9	92	19	3	3	74	1.09
6505004--6505072	22	3.3	20	74	21	63	23	2	1	72	1.06
6505334--6505421	2	45.0	2	87	8	128	51	0	1	46	1.08
6507648--6507704	8	7.5	8	80	9	57	24	0	0	75	0.80
6507648--6507707	30	2.0	30	87	6	86	26	0	0	73	0.84
6507647--6507705	7	7.6	8	75	19	54	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6507657--6507707	7	7.0	7	84	4	57	25	0	0	74	0.82
6512481--6512510	4	7.5	4	100	0	60	50	0	23	26	1.50
6514016--6514047	2	16.0	2	100	0	64	0	50	0	50	1.00
6517762--6517789	2	14.0	2	100	0	56	50	0	50	0	1.00
6523296--6523332	3	12.7	3	88	5	58	0	32	0	67	0.91
6532661--6532688	3	9.3	3	100	0	56	0	35	0	64	0.94
6544535--6544603	21	3.1	21	66	11	57	27	26	20	26	1.99
6544507--6544617	45	2.5	45	83	0	141	27	21	18	32	1.97
6544605--6544651	24	2.0	24	91	0	76	23	10	23	42	1.85
6544733--6544905	45	3.8	45	88	0	211	23	20	21	34	1.97
6544823--6544920	24	4.2	24	74	7	85	21	18	23	36	1.95
6544813--6544881	21	3.1	21	66	11	57	27	26	18	27	1.98
6544778--6545088	114	2.7	114	83	2	426	24	20	20	33	1.97
6544830--6544965	69	2.0	69	86	0	191	22	18	22	36	1.95
6544718--6545019	159	1.9	159	86	1	435	24	19	21	34	1.96
6544899--6545009	45	2.5	45	90	0	177	24	19	20	35	1.96
6544937--6545143	69	3.0	69	85	0	279	25	19	19	35	1.95
6544989--6545108	24	5.1	24	71	9	95	25	18	19	37	1.94
6556015--6556220	108	1.9	108	92	0	349	42	3	17	36	1.66
6557210--6557242	16	2.1	16	100	0	66	39	12	12	36	1.80
6564515--6564548	2	17.0	2	93	0	59	47	0	0	52	1.00
6567520--6567563	15	2.8	15	86	6	61	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6571721--6571766	6	7.7	6	100	0	92	65	34	0	0	0.93
6585816--6585872	12	4.6	12	79	16	55	38	1	0	59	1.08
6587053--6587169	59	2.0	60	93	1	200	26	17	19	35	1.94
6590810--6590845	3	12.0	3	93	0	63	0	30	33	36	1.58
6593152--6593205	22	2.2	26	68	25	62	25	16	18	38	1.92
6593158--6593200	22	2.0	22	95	0	77	27	18	18	34	1.95
6613549--6613699	77	2.0	77	89	0	230	33	10	9	47	1.70
6613567--6613726	77	2.1	76	83	6	198	33	10	9	46	1.71
6614823--6614878	22	2.4	23	80	14	62	42	1	5	50	1.35
6618185--6618735	281	2.0	275	87	4	786	40	9	30	19	1.83
6633673--6633779	14	7.3	14	68	25	53	25	1	6	66	1.26
6633689--6633759	35	2.0	36	83	2	90	25	2	5	66	1.27
6637920--6637961	2	21.0	2	100	0	84	50	0	0	50	1.00
6641420--6641445	2	13.0	2	100	0	52	50	0	0	50	1.00
6653330--6653366	18	2.0	19	94	5	67	62	0	0	37	0.96
6654883--6655010	63	2.0	63	90	3	204	33	14	12	39	1.83
6658020--6658183	84	2.0	84	85	0	220	34	21	10	33	1.88
6659059--6659201	49	2.9	49	91	0	241	30	11	15	42	1.82
6663268--6663322	27	2.0	27	89	0	83	36	18	16	29	1.92
6666468--6666535	9	6.9	9	83	8	55	19	0	0	80	0.70
6666466--6666502	14	2.7	14	91	4	58	8	0	0	91	0.41
6666481--6666543	16	3.9	16	80	15	60	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6666493--6666527	6	6.2	6	90	9	56	31	0	0	68	0.90
6666494--6666543	12	4.5	11	81	16	59	30	0	0	70	0.88
6666482--6666543	22	2.7	23	76	16	67	25	0	0	74	0.82
6667265--6667358	49	1.9	49	88	0	143	29	10	18	41	1.84
6675212--6675238	5	5.4	5	100	0	54	18	0	0	81	0.69
6676686--6676828	45	3.2	46	80	6	134	41	27	6	23	1.80
6676700--6676828	47	2.8	46	87	5	174	42	29	6	21	1.77
6685026--6685286	134	1.9	135	92	2	445	34	20	2	43	1.64
6687491--6687639	45	3.3	47	79	8	148	40	25	8	24	1.84
6687505--6687633	45	2.9	45	84	10	149	42	27	7	22	1.81
6689841--6689995	45	3.4	44	81	9	179	40	26	10	23	1.86
6691476--6691535	26	2.3	27	94	5	113	35	30	3	31	1.74
6694543--6694606	18	3.6	18	80	0	74	43	7	7	40	1.62
6694554--6694625	26	2.8	26	80	0	81	43	8	6	41	1.62
6694544--6694625	14	6.1	14	75	11	73	42	8	7	41	1.63
6696899--6697027	65	2.0	64	100	0	249	24	6	10	57	1.56
6697031--6697077	2	25.5	2	83	16	66	51	0	0	48	1.00
6705985--6706030	20	2.2	21	77	14	51	52	2	6	39	1.40
6707634--6707666	16	2.1	16	88	11	50	54	12	0	33	1.37
6708183--6708210	3	9.3	3	100	0	56	35	0	0	64	0.94
6709360--6709397	12	2.9	13	84	11	51	55	0	2	42	1.14
6711026--6711066	21	2.0	21	85	9	57	53	4	4	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6712462--6712776	81	3.9	81	87	2	433	41	7	10	40	1.68
6716155--6716198	22	2.0	23	91	8	74	31	2	20	45	1.64
6723880--6724089	81	2.6	82	90	3	338	40	8	11	39	1.73
6725066--6725100	14	2.6	14	95	4	63	31	2	22	42	1.68
6738108--6738220	34	3.3	34	75	0	118	35	24	13	26	1.92
6739213--6739697	245	2.0	243	94	0	844	25	20	17	35	1.95
6740154--6740229	3	24.7	3	77	10	73	26	3	2	67	1.22
6740138--6740229	9	10.6	9	70	19	52	23	3	5	67	1.27
6741238--6741290	16	3.2	16	76	10	54	22	0	3	73	0.99
6741526--6741739	100	2.1	100	87	5	306	33	15	21	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54