genome.fa.s7.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  28  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11756392--11756443	4	14.2	4	75	18	51	53	21	0	25	1.45
11756448--11756494	2	22.5	2	91	8	76	46	2	2	48	1.25
11756443--11756493	26	2.0	24	92	7	84	47	1	3	47	1.32
11763830--11763855	6	4.3	6	100	0	52	50	15	34	0	1.45
11766789--11766997	115	1.8	114	87	3	312	47	15	17	20	1.83
11769157--11769216	28	2.1	28	82	11	70	26	13	31	28	1.94
11769092--11769241	65	2.3	64	86	5	198	25	12	32	30	1.93
11769193--11769275	37	2.3	35	86	10	107	26	10	27	34	1.90
11770181--11770238	29	2.0	29	96	0	107	36	20	8	34	1.84
11772601--11772649	19	2.6	19	90	0	71	36	26	10	26	1.88
11775979--11776078	48	2.1	48	100	0	200	32	6	23	39	1.79
11776641--11776805	80	2.1	80	89	4	253	30	9	26	33	1.88
11780288--11780335	15	3.2	14	83	16	53	0	31	0	68	0.90
11780423--11780465	19	2.3	19	83	0	59	37	9	32	20	1.85
11783043--11783157	37	3.1	37	87	5	185	26	10	40	23	1.87
11791421--11791455	16	2.2	16	94	0	61	48	2	0	48	1.16
11795354--11795570	55	4.0	54	87	3	326	26	35	16	21	1.94
11796786--11796827	19	2.2	19	91	0	66	33	9	40	16	1.81
11811748--11811855	35	3.2	35	70	12	89	35	25	10	29	1.89
11811747--11811887	67	2.1	68	83	1	176	39	26	7	26	1.83
11820510--11820567	30	1.9	30	89	0	89	43	3	18	34	1.68
11830470--11831035	293	1.9	293	86	2	814	43	10	21	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11831986--11832028	18	2.4	19	80	11	54	65	23	0	11	1.25
11832442--11832471	10	2.8	11	90	10	53	40	20	10	30	1.85
11832473--11832518	18	2.6	18	89	0	74	26	10	17	45	1.81
11832781--11832837	18	3.2	17	80	9	69	31	14	17	36	1.89
11832781--11832837	9	6.3	9	72	0	51	31	14	17	36	1.89
11835048--11835099	2	26.5	2	96	3	97	48	0	0	51	1.00
11843551--11843731	93	1.9	93	96	0	335	27	27	14	30	1.95
11844369--11844421	25	2.2	25	86	3	72	5	26	0	67	1.12
11847653--11847692	17	2.4	17	100	0	80	12	20	25	42	1.86
11852680--11852713	17	2.1	17	88	5	52	38	5	11	44	1.65
11856652--11856734	31	2.6	31	83	9	89	50	0	1	48	1.08
11856677--11856731	24	2.3	24	87	6	76	49	0	0	50	1.00
11856691--11856735	8	5.6	8	85	15	58	42	0	0	57	0.98
11856706--11856819	43	2.8	39	78	12	120	50	0	1	46	1.17
11856759--11856825	16	4.2	16	76	14	66	50	0	1	47	1.10
11856760--11856794	17	2.1	17	89	5	54	54	0	2	42	1.15
11859387--11859465	40	2.0	40	87	0	113	17	21	24	36	1.94
11861196--11861396	110	1.8	109	97	1	321	51	16	2	28	1.59
11861787--11861829	21	2.0	22	81	4	52	46	9	4	39	1.57
11865382--11865413	2	16.0	2	93	0	55	50	3	0	46	1.17
11866829--11866945	34	3.4	33	73	15	103	24	22	30	22	1.99
11866856--11866964	36	3.1	35	73	17	109	24	25	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11866829--11866964	69	2.0	70	89	1	211	25	25	28	21	1.99
11868435--11868498	23	3.0	23	78	19	75	50	0	0	50	1.00
11868456--11868554	23	4.5	21	76	18	96	51	2	0	46	1.12
11868501--11868563	20	3.0	21	76	19	69	53	1	0	44	1.10
11868479--11868575	43	2.3	41	92	7	160	52	2	0	45	1.12
11868488--11868571	16	5.4	16	72	18	63	51	2	0	46	1.14
11876456--11876481	2	13.0	2	100	0	52	50	0	0	50	1.00
11884021--11884069	15	3.2	16	75	13	50	46	12	0	40	1.41
11902722--11902784	33	2.0	31	84	6	81	22	1	3	73	1.07
11906894--11906922	2	14.5	2	100	0	58	51	48	0	0	1.00
11908181--11908222	22	1.9	22	90	0	66	23	30	35	9	1.87
11908525--11908648	15	8.3	15	66	21	55	45	0	3	50	1.23
11908530--11908614	26	3.4	25	77	6	73	49	1	3	45	1.26
11908667--11908728	22	2.8	23	76	13	76	58	1	0	40	1.08
11908706--11908738	15	2.3	15	89	5	50	57	0	0	42	0.98
11908714--11908812	15	7.0	15	67	20	54	48	0	1	50	1.07
11908675--11908761	26	3.6	25	76	14	76	52	1	0	45	1.08
11908714--11908797	39	2.1	42	82	10	104	48	0	1	50	1.08
11911228--11911424	101	2.0	101	89	5	310	38	9	11	41	1.74
11914072--11914096	13	1.9	13	100	0	50	48	8	0	44	1.32
11919046--11919096	15	3.4	15	80	0	57	52	15	1	29	1.54
11920299--11920323	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11928969--11928993	13	1.9	13	100	0	50	48	8	0	44	1.32
11935237--11935261	13	1.9	13	100	0	50	48	8	0	44	1.32
11939706--11939769	31	2.1	30	85	2	83	20	0	9	70	1.14
11942039--11942089	21	2.4	22	86	3	68	43	0	1	54	1.11
11942059--11942095	19	2.0	18	89	5	56	40	0	0	59	0.97
11944458--11944514	28	2.1	27	81	12	71	31	22	19	26	1.98
11945735--11945857	42	2.9	42	92	0	210	21	21	33	22	1.97
11946092--11946153	26	2.4	26	91	0	97	25	3	38	32	1.72
11948871--11948900	15	2.0	15	93	0	51	56	6	6	30	1.51
11949297--11949366	31	2.2	31	82	2	86	28	28	22	20	1.98
11960873--11960912	15	2.7	15	84	7	55	35	2	22	40	1.68
11965575--11965599	5	5.0	5	100	0	50	60	0	0	40	0.97
11968116--11968140	13	1.9	13	100	0	50	44	0	8	48	1.32
11970462--11970513	27	1.9	27	85	14	72	28	21	19	30	1.97
11971720--11971928	42	5.0	42	89	0	292	20	23	32	23	1.98
11971931--11971978	3	17.0	3	76	20	50	31	2	37	29	1.69
11971935--11971996	26	2.4	26	88	0	88	25	3	37	33	1.72
11973150--11973200	26	2.0	26	100	0	102	27	5	23	43	1.77
11974350--11974740	218	1.8	218	92	3	655	44	4	8	41	1.56
12000839--12000925	31	2.8	31	92	1	138	34	28	13	22	1.93
12002888--12002913	2	13.0	2	100	0	52	50	0	0	50	1.00
12003102--12003127	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12002880--12003300	214	2.0	212	99	0	824	40	6	10	42	1.65
12004987--12005023	19	1.9	19	88	0	56	24	13	13	48	1.78
12013416--12013485	29	2.4	29	78	0	77	24	7	15	52	1.67
12015143--12015167	13	1.9	13	100	0	50	48	8	0	44	1.32
12022226--12022266	15	2.9	14	85	7	64	56	14	2	26	1.51
12024782--12024835	28	2.0	27	85	3	72	25	20	20	33	1.97
12027063--12027109	20	2.3	20	92	0	76	29	6	21	42	1.77
12049856--12049921	2	33.0	2	90	0	105	50	4	0	45	1.22
12049844--12049918	18	4.2	18	94	0	96	50	8	0	41	1.32
12056599--12056648	6	8.0	6	88	6	64	76	2	4	18	1.04
12056757--12056919	57	2.8	58	77	4	195	36	14	9	39	1.78
12056869--12057027	52	3.0	52	79	0	147	35	15	9	39	1.79
12056757--12057318	58	9.8	58	72	10	318	36	16	10	37	1.82
12059027--12059235	55	3.8	55	83	1	267	24	12	34	28	1.92
12059029--12059235	110	1.9	110	87	0	306	25	12	34	28	1.92
12061811--12061952	42	3.4	42	86	0	212	20	23	32	23	1.98
12069274--12069328	21	2.8	20	75	5	58	29	0	30	40	1.57
12078022--12078178	35	4.7	34	72	14	96	33	29	10	26	1.90
12077975--12078178	67	3.1	66	85	5	270	33	29	11	25	1.91
12078055--12078177	35	3.8	32	75	11	106	34	29	12	24	1.91
12085217--12085279	3	21.3	3	72	15	51	26	4	0	68	1.10
12085217--12085283	26	2.6	28	75	17	74	26	5	0	67	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12086657--12086694	20	1.9	20	84	10	51	18	2	5	73	1.14
12086792--12086834	14	3.0	14	73	6	50	44	0	6	48	1.29
12086824--12086890	24	2.7	25	80	13	68	43	1	8	46	1.44
12093351--12093409	28	2.1	28	96	0	109	61	6	11	20	1.53
12108297--12108401	53	2.0	53	100	0	210	30	19	6	43	1.76
12111495--12111572	41	1.9	41	89	0	120	38	10	6	44	1.64
12112142--12112176	18	1.9	18	88	0	52	62	2	0	34	1.10
12112703--12112743	22	2.0	21	85	9	57	43	4	4	46	1.46
12113255--12113296	2	21.0	2	100	0	84	50	0	0	50	1.00
12116825--12116893	21	3.1	21	76	13	68	75	1	10	13	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54