genome.fa.s7.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  13  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6017636--6017743	31	3.5	31	93	2	191	37	18	16	26	1.92
6019251--6019275	13	1.9	13	100	0	50	48	0	32	20	1.50
6019495--6019564	29	2.4	29	90	0	113	45	8	24	21	1.79
6019514--6019576	14	4.3	15	73	13	60	46	7	25	20	1.78
6019495--6019576	29	2.8	28	88	3	110	46	8	24	20	1.78
6022275--6022317	16	2.5	16	85	11	50	41	2	0	55	1.12
6026705--6026793	46	2.0	46	82	6	110	38	19	10	32	1.85
6033678--6033750	33	2.2	33	83	9	87	49	1	2	46	1.24
6050182--6050227	19	2.4	20	79	17	53	50	23	8	17	1.74
6050879--6050933	25	2.1	26	86	6	76	70	0	0	29	0.87
6065207--6065248	9	4.6	9	94	5	75	54	0	0	45	0.99
6065208--6065245	19	2.0	19	100	0	76	52	0	0	47	1.00
6077303--6077440	68	2.0	68	100	0	276	29	10	27	32	1.89
6080665--6080693	2	14.5	2	100	0	58	0	51	0	48	1.00
6098336--6098382	21	2.1	24	84	11	64	25	2	0	72	0.96
6098345--6098394	21	2.4	21	79	0	55	18	4	0	76	0.93
6098471--6098514	15	2.8	16	86	6	54	29	2	4	63	1.26
6100871--6100919	21	2.4	20	83	12	64	18	0	4	77	0.92
6107113--6107179	21	3.2	21	64	19	59	31	8	16	43	1.79
6107114--6107197	41	2.0	41	100	0	168	32	9	14	44	1.77
6109144--6109226	33	2.5	33	76	4	85	45	2	9	42	1.50
6118874--6118929	28	2.0	27	82	3	67	50	0	3	46	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6121762--6121819	21	2.9	21	71	21	61	17	22	29	31	1.96
6126699--6126755	26	2.2	26	96	3	107	50	8	7	33	1.60
6130056--6130182	67	1.9	67	90	0	200	42	12	11	33	1.79
6132417--6134436	913	2.2	912	84	2	2669	33	16	18	31	1.94
6134492--6134525	3	11.0	3	93	6	59	2	32	0	64	1.08
6138474--6138503	14	2.1	15	93	6	53	56	0	3	40	1.16
6139374--6139403	2	15.0	2	100	0	60	50	0	0	50	1.00
6141553--6141587	8	4.2	8	89	7	52	51	0	0	48	1.00
6141577--6141610	17	2.0	17	88	0	50	50	2	0	47	1.16
6141899--6141933	17	2.1	17	89	5	54	54	2	2	40	1.30
6141961--6142000	20	2.0	20	90	9	64	62	0	0	37	0.95
6142008--6142061	27	2.0	27	88	0	81	53	1	0	44	1.11
6150616--6150680	19	3.2	20	74	12	62	43	0	0	56	0.99
6150620--6150681	20	3.2	20	80	15	76	43	0	0	56	0.99
6154837--6154890	27	2.0	26	82	10	65	48	20	11	20	1.80
6169720--6169759	6	6.3	6	88	11	62	85	0	15	0	0.61
6169720--6169759	20	2.0	20	100	0	80	85	0	15	0	0.61
6170549--6170633	33	2.5	33	79	9	93	63	0	5	30	1.18
6170849--6170902	15	3.6	15	82	0	63	35	22	7	35	1.82
6171049--6171105	19	3.2	17	76	13	53	33	3	0	63	1.12
6171049--6171099	16	2.8	18	80	11	52	31	3	0	64	1.11
6178865--6178919	2	26.5	2	82	10	58	7	47	0	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6188100--6188133	15	2.3	15	94	0	59	61	8	8	20	1.52
6191999--6192072	2	38.0	2	80	10	82	52	1	0	44	1.09
6193416--6193538	63	1.9	64	88	1	185	44	7	4	43	1.53
6193432--6193531	21	4.8	21	68	9	60	48	7	4	41	1.49
6194977--6195166	96	2.0	96	87	2	274	21	20	36	21	1.95
6196902--6196972	2	36.0	2	83	13	94	46	1	1	49	1.19
6198422--6198472	26	1.9	27	84	11	70	80	0	0	19	0.71
6202292--6202354	15	4.1	15	87	2	63	39	7	17	34	1.79
6207165--6207233	23	3.0	22	81	8	68	37	27	13	21	1.90
6207183--6207440	26	10.8	25	73	16	144	37	24	13	25	1.91
6207266--6207318	21	2.5	21	90	0	88	35	20	15	28	1.93
6207243--6207407	68	2.4	67	82	5	188	35	24	13	26	1.93
6207287--6207474	47	4.0	46	74	14	159	37	24	13	24	1.92
6207330--6207396	21	3.0	22	81	10	75	32	29	14	22	1.94
6209261--6209479	118	1.9	118	85	3	307	30	4	2	63	1.26
6209450--6209496	13	3.9	12	81	18	62	14	4	0	80	0.85
6209450--6209496	7	6.6	7	76	13	51	14	4	0	80	0.85
6210954--6211011	27	2.3	26	80	16	68	53	0	6	39	1.28
6210995--6211035	22	1.9	21	85	5	55	60	2	4	31	1.30
6225402--6225458	21	2.6	22	83	5	80	21	8	22	47	1.78
6225491--6225624	23	5.8	23	80	7	139	35	28	11	24	1.91
6225560--6225809	26	10.5	26	73	12	148	36	22	14	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6225603--6225783	73	2.6	69	81	6	199	37	23	13	25	1.92
6225727--6225786	22	2.7	22	100	0	120	30	28	15	26	1.96
6225560--6225837	91	3.0	90	77	11	272	37	23	13	26	1.92
6225793--6225836	21	2.2	20	83	4	52	43	18	11	27	1.84
6241129--6241213	44	1.9	44	92	0	143	28	22	15	34	1.94
6253424--6253466	17	2.6	16	78	10	50	25	0	11	62	1.29
6255260--6255285	2	13.0	2	100	0	52	50	0	50	0	1.00
6255313--6255345	2	16.5	2	93	0	57	48	0	51	0	1.00
6261820--6261846	2	13.5	2	100	0	54	0	0	51	48	1.00
6261846--6261894	2	24.5	2	95	0	89	51	0	48	0	1.00
6266898--6267035	69	2.0	69	97	0	258	36	15	11	36	1.84
6269721--6269789	34	2.0	35	94	2	122	40	7	21	30	1.80
6279290--6279350	31	2.0	30	84	6	79	39	1	3	55	1.26
6279491--6279548	25	2.3	24	80	13	64	55	1	1	41	1.20
6279503--6279532	15	2.0	15	93	0	51	56	0	0	43	0.99
6281690--6281806	43	2.8	42	86	2	162	41	17	25	15	1.88
6282115--6282227	42	2.7	42	75	8	115	38	18	28	15	1.91
6285995--6286072	37	2.0	39	81	16	92	37	1	2	58	1.20
6286044--6286101	23	2.6	23	70	24	61	50	0	3	46	1.18
6286270--6286318	21	2.3	21	77	19	57	48	2	0	48	1.12
6290218--6290268	2	26.5	2	77	15	54	43	5	0	50	1.26
6290217--6290269	22	2.3	22	90	6	79	41	5	0	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6292327--6292381	18	2.8	19	76	15	51	60	0	0	40	0.97
6292338--6292379	22	2.0	21	85	4	57	57	0	0	42	0.99
6296883--6296929	2	25.0	2	87	12	73	48	0	0	51	1.00
6302940--6302975	2	18.0	2	100	0	72	50	0	0	50	1.00
6307168--6307214	9	4.8	10	89	5	62	82	0	17	0	0.66
6307171--6307214	10	4.4	10	82	5	54	84	0	15	0	0.63
6307171--6307214	15	3.1	14	81	15	54	84	0	15	0	0.63
6307244--6307293	18	2.8	17	78	9	55	80	2	18	0	0.82
6307257--6307293	16	2.2	17	86	13	51	78	0	21	0	0.75
6317085--6317153	35	2.0	35	94	5	122	31	28	5	33	1.81
6317113--6317213	51	2.0	51	88	3	150	33	23	6	35	1.82
6317614--6317723	54	2.0	54	94	0	193	18	19	29	33	1.95
6317768--6317995	33	7.2	30	86	12	257	6	35	23	35	1.81
6317768--6317995	63	3.6	64	89	9	351	6	35	23	35	1.81
6317778--6317982	33	6.3	33	94	3	362	6	32	25	35	1.81
6332265--6332422	30	5.4	29	77	10	160	56	0	3	39	1.22
6332284--6332422	58	2.4	59	87	6	203	57	0	2	39	1.14
6332286--6332363	20	4.1	19	66	20	54	57	0	2	39	1.12
6337897--6337922	12	2.2	12	100	0	52	15	0	0	84	0.62
6338037--6338075	9	4.3	9	83	0	51	10	20	30	38	1.86
6343428--6343489	31	2.0	31	93	6	108	35	9	32	22	1.87
6343696--6343745	16	3.1	16	76	0	55	10	0	30	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6351305--6351352	15	3.2	15	81	0	60	35	8	16	39	1.79
6352165--6353620	751	1.9	752	94	1	2560	33	12	15	38	1.85
6359314--6359371	25	2.3	26	80	14	68	13	25	34	25	1.93
6364404--6364437	2	17.0	2	100	0	68	50	0	0	50	1.00
6379042--6379078	17	2.2	17	90	9	58	32	21	35	10	1.88
6381115--6381144	2	15.0	2	100	0	60	50	0	0	50	1.00
6388653--6388679	9	3.0	9	100	0	54	0	11	22	66	1.22
6389980--6390005	11	2.4	11	100	0	52	38	0	0	61	0.96
6412328--6412379	25	2.1	25	96	0	95	30	9	15	44	1.78
6415524--6415661	68	2.0	68	98	0	267	46	13	18	21	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54