genome.fa.s7.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  31  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12775166--12775256	45	2.0	46	87	6	132	37	24	0	38	1.56
12776903--12776940	17	2.2	18	90	4	60	23	0	2	73	0.95
12777081--12777113	13	2.7	12	95	4	57	15	0	0	84	0.61
12777084--12777122	18	2.3	18	91	8	64	15	0	0	84	0.62
12777213--12777238	13	2.0	13	100	0	52	38	7	7	46	1.61
12777479--12777532	28	2.0	27	85	3	72	24	1	0	74	0.92
12777615--12777645	16	1.9	16	93	0	53	32	3	0	64	1.09
12778803--12778853	15	3.4	14	81	13	57	21	0	0	78	0.75
12778803--12778855	22	2.5	20	80	17	61	20	0	0	79	0.74
12778862--12779446	37	15.6	37	89	3	859	41	20	16	21	1.90
12778862--12779446	75	7.8	75	89	2	874	41	20	16	21	1.90
12792094--12792140	3	15.0	3	83	16	60	31	2	0	65	1.04
12792094--12792149	19	2.8	19	80	17	69	32	1	0	66	1.03
12792092--12792149	28	2.1	27	90	3	89	32	1	0	65	1.03
12793280--12793309	9	3.3	9	95	0	51	26	0	0	73	0.84
12800586--12800630	22	2.0	22	91	0	72	40	17	8	33	1.81
12803149--12803196	2	24.0	2	91	0	78	0	50	0	50	1.00
12814988--12815016	15	2.0	15	93	6	51	86	0	0	13	0.58
12819412--12819579	29	5.8	28	79	8	183	41	7	12	38	1.72
12819409--12819568	59	2.8	58	84	4	207	40	7	11	40	1.70
12823234--12823279	20	2.3	20	96	0	83	28	4	21	45	1.71
12825853--12825896	22	2.0	22	90	0	70	34	6	15	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12832638--12832675	20	1.9	20	100	0	76	44	21	5	28	1.73
12837438--12837580	71	2.0	70	95	4	261	32	6	18	40	1.78
12841035--12841087	24	2.2	25	86	3	72	71	7	5	15	1.27
12846421--12846468	21	2.3	20	75	10	51	14	20	6	58	1.58
12849532--12849624	47	2.0	45	95	4	168	51	12	0	34	1.40
12852943--12852967	13	1.9	13	100	0	50	48	8	0	44	1.32
12854101--12854158	28	2.1	28	81	15	68	24	18	22	34	1.96
12854212--12854249	20	1.9	20	100	0	76	44	21	5	28	1.73
12855231--12855408	55	3.4	52	83	9	159	20	15	36	28	1.92
12855263--12855429	55	3.0	54	88	6	248	21	14	34	29	1.93
12863791--12863834	18	2.4	19	81	11	56	27	0	9	63	1.24
12864967--12865123	58	2.8	55	79	5	179	22	13	34	29	1.92
12868695--12868731	19	1.9	19	100	0	74	40	10	37	10	1.75
12871812--12871858	24	2.0	24	83	8	60	2	21	4	72	1.12
12875064--12875186	42	2.9	42	92	0	210	21	21	33	22	1.97
12875421--12875482	26	2.4	26	94	0	106	24	3	40	32	1.71
12878169--12878377	42	5.0	42	86	0	247	23	30	22	23	1.99
12879536--12879580	24	1.9	23	90	4	72	73	0	17	8	1.08
12881984--12882208	113	2.0	111	94	1	396	54	11	12	21	1.70
12890010--12890037	11	2.5	11	100	0	56	53	14	0	32	1.41
12890031--12890074	22	2.0	22	95	0	79	38	25	9	27	1.86
12890289--12890329	21	2.0	21	100	0	82	24	19	12	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12891997--12892084	42	2.1	42	82	0	104	29	13	18	38	1.89
12894103--12894140	2	19.0	2	94	0	67	47	0	2	50	1.15
12894208--12894292	42	2.0	42	84	4	109	24	32	18	23	1.97
12897677--12897730	17	3.0	18	73	26	60	59	7	22	11	1.56
12897961--12898020	29	2.1	29	81	3	68	33	25	10	31	1.89
12898955--12898993	20	2.0	20	89	0	60	43	12	20	23	1.86
12898981--12899141	73	2.2	73	80	8	177	39	17	19	22	1.92
12900197--12900238	20	2.1	20	100	0	84	28	9	14	47	1.75
12908124--12908166	20	2.2	20	83	8	52	46	18	16	18	1.84
12909694--12909744	20	2.5	21	90	3	77	64	0	35	0	0.94
12916678--12916839	83	2.0	78	94	5	279	51	24	3	19	1.62
12919918--12920110	68	2.9	67	80	2	208	35	10	19	34	1.86
12921499--12921547	20	2.4	20	90	10	73	69	0	30	0	0.89
12921498--12921531	4	8.5	4	87	12	52	70	0	29	0	0.87
12922710--12922860	39	3.9	39	87	7	195	27	11	33	27	1.92
12924309--12924348	14	2.9	14	84	0	62	35	2	22	40	1.68
12924867--12924894	2	14.0	2	100	0	56	50	0	0	50	1.00
12927970--12928005	16	2.2	16	95	0	63	11	13	25	50	1.75
12930538--12930578	2	20.5	2	84	0	55	46	2	4	46	1.37
12930530--12930571	12	3.5	12	86	0	57	45	4	2	47	1.36
12930578--12930636	20	3.0	20	95	2	102	33	44	0	22	1.53
12930641--12930759	43	2.8	43	84	5	134	19	33	21	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12938456--12938498	2	21.5	2	95	0	77	48	0	2	48	1.14
12941883--12941938	21	2.7	21	82	0	76	33	8	16	41	1.79
12946737--12946833	34	2.9	34	74	20	96	36	30	12	20	1.90
12946740--12946833	33	2.8	33	75	10	93	37	29	12	20	1.90
12949083--12949199	42	2.8	42	85	2	155	19	19	34	26	1.96
12949234--12949272	2	19.0	2	86	5	51	43	0	5	51	1.24
12949235--12949271	19	1.9	19	88	0	56	43	0	5	51	1.24
12964793--12964821	14	2.0	15	93	6	51	48	10	20	20	1.79
12965854--12965892	19	2.1	19	85	0	51	56	0	0	43	0.99
12966441--12966479	18	2.3	16	86	8	51	71	0	28	0	0.86
12968840--12968994	63	2.5	63	84	0	193	30	34	13	21	1.92
12970048--12970092	15	3.1	15	87	3	56	0	26	0	73	0.84
12977678--12977756	39	2.0	39	100	0	158	36	7	22	32	1.83
12982053--12982078	2	13.0	2	100	0	52	50	0	0	50	1.00
12989392--12989424	2	16.5	2	100	0	66	48	0	0	51	1.00
12992051--12992103	21	2.5	21	84	6	63	35	15	9	39	1.79
12993534--12993579	21	2.2	21	82	17	60	54	8	6	30	1.56
12993963--12994050	31	3.1	27	78	15	97	62	0	1	36	1.03
12993963--12994051	27	3.1	27	76	12	97	61	0	1	37	1.03
12995692--12995858	43	3.9	43	90	0	253	23	31	19	25	1.98
13001583--13001670	39	2.3	39	76	7	90	31	17	23	27	1.97
13008379--13008479	38	2.6	40	84	3	125	23	40	14	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13011527--13011622	43	2.2	43	92	0	156	25	34	17	22	1.96
13011620--13011735	43	2.7	43	89	0	178	25	32	17	24	1.96
13011563--13011673	58	1.9	58	94	0	195	25	36	16	21	1.94
13011523--13011723	101	2.0	102	92	2	334	25	35	16	22	1.95
13015000--13015086	33	2.7	33	90	1	140	48	14	10	26	1.76
13017723--13017750	2	14.0	2	100	0	56	50	0	0	50	1.00
13034222--13034261	7	5.6	7	85	14	55	20	0	15	65	1.28
13034222--13034269	15	3.3	15	85	11	64	22	0	14	62	1.32
13034424--13034454	13	2.4	13	94	0	53	48	3	0	48	1.17
13042037--13042076	5	8.0	5	91	0	62	37	22	0	40	1.54
13042122--13042163	15	2.8	15	88	0	66	57	14	2	26	1.50
13044708--13044759	28	1.9	27	84	7	70	28	21	19	30	1.97
13049703--13049904	79	2.5	78	77	10	194	33	9	24	32	1.88
13054275--13054425	42	3.6	41	85	3	203	23	21	31	23	1.99
13054275--13054441	84	2.0	84	85	4	230	23	21	30	23	1.99
13057706--13057804	42	2.4	42	85	0	135	24	23	30	22	1.99
13057841--13057874	2	17.0	2	93	0	59	50	2	0	47	1.16
13068224--13068619	198	2.0	197	97	0	756	31	20	8	39	1.82
13069728--13069778	22	2.3	22	86	0	75	39	19	7	33	1.81
13069798--13069841	18	2.4	18	92	0	70	11	47	20	20	1.80
13073272--13073317	21	2.2	21	92	0	74	28	15	17	39	1.90
13073336--13073374	20	2.0	20	94	0	69	38	20	12	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13074544--13074688	64	2.3	64	82	0	182	28	16	26	28	1.97
13076513--13076724	74	2.9	73	76	6	212	40	15	18	25	1.90
13084470--13084534	2	34.5	2	82	11	66	46	4	0	47	1.23
13084458--13084534	40	2.0	37	94	5	127	45	7	0	45	1.32
13088378--13088431	2	27.0	2	96	0	99	48	1	0	50	1.11
13089322--13089363	19	2.2	19	83	8	50	59	0	19	21	1.38
13093306--13093427	35	3.6	35	74	6	124	31	11	24	32	1.91
13093285--13093381	32	2.9	32	73	8	95	24	12	24	38	1.90
13093285--13093420	67	2.0	67	85	0	182	26	12	24	36	1.91
13099302--13099392	42	2.2	42	88	6	139	26	34	15	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54