genome.fa.s7.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  38  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15191512--15191593	24	3.5	24	86	1	103	29	12	31	26	1.92
15191536--15191635	23	4.3	23	72	11	69	35	10	30	25	1.88
15191560--15191679	46	2.6	46	82	2	134	35	13	27	23	1.92
15191616--15191703	23	3.9	23	73	10	83	32	13	28	25	1.94
15191736--15191786	23	2.2	23	85	0	66	27	13	33	25	1.94
15191803--15191957	23	6.7	23	77	1	148	30	12	32	24	1.92
15191675--15192083	127	3.2	125	78	12	383	29	11	31	26	1.92
15191983--15192135	46	3.3	45	75	11	125	26	15	32	26	1.95
15191984--15192135	69	2.2	69	81	4	182	26	15	32	25	1.95
15191984--15192113	23	5.7	23	76	8	113	26	14	33	24	1.94
15192099--15192165	23	2.9	23	86	0	98	28	19	26	25	1.99
15192761--15192866	31	3.4	30	92	2	167	32	15	17	34	1.91
15195481--15195754	74	3.7	73	79	7	261	44	17	15	21	1.86
15204331--15204508	42	4.2	42	91	0	239	24	17	33	24	1.96
15204331--15204508	85	2.1	85	86	2	241	24	17	33	24	1.96
15205008--15205048	19	2.2	19	100	0	82	26	29	26	17	1.97
15208770--15208832	20	3.2	20	90	2	101	31	41	1	25	1.65
15208818--15208983	43	3.9	43	85	3	183	23	35	16	24	1.95
15211927--15211991	28	2.3	29	86	5	89	41	9	10	38	1.72
15219676--15219732	28	2.1	27	81	12	71	31	22	19	26	1.98
15225169--15225216	23	2.1	23	92	0	78	47	16	22	12	1.80
15226942--15227129	96	2.0	95	91	3	306	31	17	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15227715--15227877	77	2.1	77	95	0	290	31	14	17	36	1.90
15239188--15239212	11	2.3	11	100	0	50	72	0	0	28	0.86
15239307--15239345	19	2.1	19	90	0	60	53	0	7	38	1.30
15240068--15240099	16	2.0	16	100	0	64	18	12	18	50	1.78
15242026--15242085	25	2.4	25	85	0	84	28	18	30	23	1.98
15246062--15246210	74	2.0	74	98	0	289	36	7	16	39	1.76
15247595--15247747	55	2.8	55	76	8	159	27	37	15	20	1.92
15250588--15250701	60	1.9	59	87	1	165	33	22	21	22	1.97
15251976--15252013	19	2.0	20	94	5	69	36	15	26	21	1.93
15257594--15257800	35	5.9	35	77	7	190	41	14	8	34	1.77
15261414--15261593	39	4.7	39	77	8	158	24	11	37	26	1.90
15261458--15261593	38	3.6	37	77	12	118	23	11	38	26	1.88
15265838--15265880	15	2.6	17	78	7	54	30	2	6	60	1.35
15269774--15269818	15	2.9	15	81	12	54	33	2	6	57	1.37
15273334--15273388	22	2.4	22	81	9	56	21	9	23	45	1.80
15273334--15273396	23	2.8	22	80	9	56	23	7	22	46	1.78
15282543--15282789	122	2.0	122	96	1	451	34	10	27	27	1.89
15285450--15285496	24	1.9	25	83	12	62	27	10	25	36	1.89
15285591--15285640	22	2.3	22	92	0	82	34	14	42	10	1.78
15285653--15285698	25	1.9	23	86	8	65	67	2	26	4	1.21
15285684--15285721	16	2.4	17	82	13	53	78	0	18	2	0.86
15285718--15285778	31	1.9	32	83	9	81	45	14	24	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15289197--15289251	22	2.5	22	84	0	74	34	25	12	27	1.92
15289569--15289724	42	3.7	42	80	2	186	23	34	17	23	1.96
15291212--15291252	22	1.9	21	85	5	55	31	17	17	34	1.93
15295289--15295368	40	2.0	40	87	2	117	37	22	18	21	1.94
15295689--15295723	2	17.5	2	100	0	70	51	0	0	48	1.00
15295775--15295887	43	2.6	43	84	5	140	20	36	20	23	1.95
15300632--15300670	19	2.1	19	95	0	69	43	10	17	28	1.82
15308345--15308383	18	2.1	18	85	4	51	10	10	5	74	1.21
15323689--15323750	26	2.4	26	91	0	97	32	38	3	25	1.72
15323985--15324107	42	2.9	42	92	0	210	22	33	21	21	1.97
15332115--15332191	28	2.8	28	91	0	118	31	19	23	25	1.98
15332116--15332200	28	3.0	27	86	6	107	32	23	21	22	1.98
15337741--15337773	15	2.3	15	89	5	50	36	9	6	48	1.60
15347414--15347530	54	2.2	54	98	0	225	19	35	9	35	1.84
15354619--15354686	22	3.2	22	61	23	54	35	23	10	30	1.88
15354613--15354697	42	2.0	42	100	0	170	35	23	9	31	1.87
15354804--15354873	31	2.3	31	80	2	79	20	28	22	28	1.98
15354991--15355326	136	2.5	135	81	7	380	33	18	10	37	1.85
15354991--15355326	68	5.0	68	77	6	326	33	18	10	37	1.85
15358024--15358183	54	3.0	54	85	3	232	28	38	11	20	1.88
15358289--15358323	2	17.5	2	93	0	61	48	2	0	48	1.16
15364374--15364456	2	41.0	2	85	2	112	46	1	3	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15385221--15385335	33	3.4	32	77	7	104	32	17	20	30	1.95
15386814--15386866	20	2.7	20	85	5	63	35	20	20	22	1.96
15389897--15390002	35	3.1	34	83	1	131	27	13	31	28	1.94
15396165--15396332	91	1.8	92	89	3	268	34	13	19	32	1.91
15405010--15405069	25	2.4	25	88	0	84	26	28	16	28	1.97
15410173--15410217	2	22.0	2	86	4	63	51	2	2	44	1.26
15410223--15410494	54	5.0	54	86	2	357	24	41	13	20	1.89
15410223--15410491	108	2.5	108	87	4	398	23	42	13	20	1.88
15414894--15414918	2	12.5	2	100	0	50	48	0	0	52	1.00
15418465--15418521	20	2.8	20	84	7	71	31	21	15	31	1.94
15420755--15420783	14	2.1	14	100	0	58	58	13	6	20	1.58
15422814--15422906	48	1.9	48	86	0	132	38	26	7	26	1.83
15424171--15424229	29	2.1	27	84	6	73	28	22	5	44	1.74
15426362--15426608	123	2.0	123	95	0	440	37	10	12	39	1.78
15429142--15429205	33	1.9	33	90	6	103	31	10	4	53	1.57
15468413--15468445	12	2.8	12	95	0	57	6	33	9	51	1.58
15473437--15473656	36	5.9	36	77	7	197	18	12	42	27	1.85
15473442--15473690	79	3.3	72	87	5	309	20	11	40	27	1.87
15477865--15477922	5	11.8	5	81	15	68	77	0	0	22	0.77
15477865--15477917	16	3.5	15	92	7	90	75	0	0	24	0.80
15479624--15479652	15	1.9	15	100	0	58	34	13	27	24	1.93
15479941--15480160	35	6.3	35	81	5	223	36	5	13	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15485303--15485444	32	4.2	34	75	11	123	29	15	22	32	1.95
15485319--15485444	32	3.8	32	78	6	135	26	16	24	31	1.96
15485318--15485444	67	1.9	67	93	0	218	27	16	24	31	1.96
15497028--15497089	23	2.7	22	75	9	61	66	6	4	22	1.35
15502007--15502077	23	3.1	22	75	15	72	39	4	1	54	1.28
15508962--15509042	34	2.4	34	85	0	99	37	20	8	33	1.84
15516420--15516541	63	1.9	63	82	9	151	24	15	14	45	1.84
15521238--15521408	61	2.8	62	80	6	170	30	21	21	26	1.98
15524553--15524593	18	2.3	18	82	0	55	41	14	12	31	1.83
15532059--15532097	21	1.9	20	84	5	51	38	5	17	38	1.72
15533848--15533892	20	2.2	20	80	0	54	66	13	15	4	1.39
15539581--15539621	19	2.2	20	82	13	59	51	0	2	46	1.14
15554399--15554453	28	2.0	29	82	7	69	36	25	14	23	1.93
15562290--15562334	22	2.1	21	83	4	54	24	20	26	28	1.99
15562582--15562749	84	2.0	84	86	4	232	23	32	21	22	1.98
15562588--15562749	42	3.9	41	82	4	191	22	32	20	23	1.98
15569627--15569752	42	3.0	42	86	0	180	24	34	20	19	1.96
15569788--15569839	2	26.0	2	92	0	86	46	0	1	51	1.12
15571440--15571504	28	2.3	28	83	0	94	29	23	23	24	1.99
15571440--15571513	28	2.6	28	82	0	85	28	20	21	29	1.98
15579959--15580101	49	2.9	48	87	3	214	25	16	36	22	1.94
15582072--15582168	28	3.5	27	80	10	115	35	12	20	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15586295--15586354	20	3.0	20	80	7	70	53	0	6	40	1.27
15588250--15588293	11	4.3	11	81	18	51	0	22	9	68	1.18
15596207--15596245	2	19.5	2	89	10	62	48	2	0	48	1.15
15598258--15598308	25	2.0	25	88	0	75	15	11	19	52	1.73
15615652--15615697	20	2.3	20	92	0	74	45	23	4	26	1.71
15629289--15629399	37	3.0	37	81	0	123	26	34	13	26	1.93
15630191--15630249	29	2.0	30	93	6	95	38	13	38	6	1.71
15631477--15631671	74	2.6	74	83	4	241	21	17	18	42	1.89
15633285--15633416	36	3.7	36	82	4	142	27	40	10	21	1.86
15638104--15638281	39	4.7	36	79	11	178	18	11	42	28	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54