genome.fa.s7.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  26  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11017721--11017832	43	2.6	43	83	6	147	24	21	35	18	1.95
11017724--11017845	43	2.8	43	82	4	140	24	19	36	18	1.94
11018222--11018365	59	2.4	60	83	4	184	24	20	23	31	1.98
11028468--11028586	43	2.8	43	89	2	177	21	21	37	19	1.94
11028478--11028599	43	2.8	43	88	2	174	22	18	39	18	1.92
11032748--11032865	51	2.3	51	94	0	209	36	6	20	36	1.79
11039599--11039657	29	1.9	30	83	10	75	50	13	5	30	1.63
11041581--11041685	40	2.6	41	89	1	158	60	20	0	19	1.43
11042296--11042336	2	21.0	2	95	5	75	48	0	0	51	1.00
11042341--11042373	16	2.1	17	88	11	52	39	0	6	54	1.25
11041692--11042831	512	2.3	501	86	6	1520	44	5	7	41	1.57
11052957--11053056	39	2.6	39	86	0	137	26	14	34	26	1.94
11053035--11053131	36	2.6	37	76	9	99	21	12	39	26	1.89
11057243--11057406	74	2.2	74	94	0	292	39	15	20	25	1.91
11058889--11058933	22	2.0	22	82	0	54	73	4	20	2	1.11
11069420--11069595	88	2.0	89	96	2	320	46	13	6	33	1.69
11069567--11069602	2	18.0	2	100	0	72	50	0	0	50	1.00
11078014--11078075	15	4.0	15	72	13	54	69	1	3	25	1.13
11078506--11078546	16	2.5	17	80	15	50	29	0	0	70	0.87
11079050--11079172	35	3.5	35	84	1	158	43	18	17	21	1.89
11085867--11086066	96	2.1	96	99	0	391	32	11	14	42	1.81
11092125--11092165	21	2.0	21	85	0	55	65	7	4	21	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11104271--11104314	15	2.9	15	80	9	54	52	15	4	27	1.63
11106874--11106925	28	1.9	27	84	7	70	28	21	19	30	1.97
11106979--11107016	20	1.9	20	94	0	67	44	23	5	26	1.74
11107382--11107546	83	2.0	82	98	1	321	37	8	4	48	1.55
11108655--11108697	22	2.0	22	90	0	68	41	16	20	20	1.90
11112633--11112663	15	2.1	15	93	0	53	35	16	12	35	1.87
11113350--11113409	30	2.1	29	81	6	68	31	8	21	38	1.83
11115966--11116065	35	2.9	34	80	3	110	38	24	17	21	1.93
11116654--11116744	45	2.0	45	91	0	146	21	36	5	36	1.77
11117314--11117358	19	2.2	20	92	7	74	24	13	33	28	1.93
11120559--11120604	24	1.9	24	82	8	58	28	17	17	36	1.92
11120421--11120700	80	3.4	81	83	4	339	31	16	12	40	1.85
11134110--11134156	24	2.0	24	86	0	67	10	36	17	36	1.84
11134140--11134186	24	2.0	24	82	0	58	6	46	10	36	1.64
11134321--11134484	69	2.4	69	89	0	238	31	19	29	20	1.97
11134335--11134440	45	2.3	47	80	11	137	32	17	28	21	1.96
11134337--11134453	24	5.0	24	80	10	152	31	18	28	21	1.97
11140413--11140448	17	2.1	17	94	0	63	33	36	2	27	1.72
11141311--11141361	19	2.5	21	78	12	61	35	13	5	45	1.68
11142757--11142901	78	1.9	78	83	0	191	19	24	17	39	1.92
11146215--11146790	223	2.6	223	87	2	778	43	26	12	17	1.84
11146184--11146790	111	5.4	111	86	2	757	43	26	12	17	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11150681--11150743	33	1.9	33	90	0	99	31	6	1	60	1.31
11151612--11151670	24	2.4	25	82	2	66	44	13	23	18	1.86
11152701--11153080	191	2.0	191	94	1	665	33	17	15	33	1.91
11154026--11154063	19	2.0	19	94	0	67	42	28	0	28	1.56
11156342--11156381	21	1.9	21	89	0	62	50	7	10	32	1.64
11157070--11157152	35	2.4	34	80	6	94	56	2	0	40	1.12
11157105--11157142	14	2.7	14	88	8	51	52	2	0	44	1.14
11157234--11157375	74	1.9	74	89	0	221	45	6	4	42	1.51
11161870--11161897	11	2.5	11	100	0	56	42	39	17	0	1.50
11173868--11173903	15	2.4	15	100	0	72	25	30	11	33	1.90
11180303--11180348	20	2.3	19	82	17	58	67	6	23	2	1.25
11180355--11180411	17	3.3	17	69	13	53	47	21	14	17	1.82
11180347--11180416	35	2.0	35	97	0	131	48	18	14	18	1.81
11180347--11180404	18	3.3	18	69	13	57	55	17	13	13	1.70
11195645--11195688	2	22.0	2	95	0	79	47	0	2	50	1.13
11196493--11196528	18	1.9	19	88	5	56	30	2	0	66	1.06
11197513--11198014	252	2.0	251	99	0	979	30	12	15	41	1.84
11201615--11201650	18	2.0	18	89	10	56	58	0	41	0	0.98
11206054--11206107	21	2.6	21	87	0	72	40	9	11	38	1.73
11206902--11206927	12	2.2	12	100	0	52	42	19	23	15	1.89
11207957--11208091	66	2.0	66	85	0	180	24	8	22	44	1.81
11210025--11210069	22	2.1	22	84	15	60	31	4	17	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11213528--11213565	19	2.0	19	94	0	67	42	28	0	28	1.56
11218458--11218495	3	12.3	3	94	5	67	34	0	0	65	0.93
11224382--11224583	101	2.0	101	99	0	388	37	4	18	38	1.73
11227598--11227623	13	2.0	13	100	0	52	46	0	7	46	1.31
11231245--11231492	124	2.0	123	99	0	487	12	16	13	56	1.66
11232329--11232354	3	8.7	3	100	0	52	34	0	0	65	0.93
11233179--11233264	33	2.6	33	87	3	111	67	0	2	30	1.03
11234189--11234227	21	1.9	20	84	5	51	48	2	0	48	1.15
11248566--11248604	19	2.1	19	100	0	78	35	28	15	20	1.93
11249376--11249442	20	3.3	20	69	22	68	47	5	1	43	1.37
11249376--11249458	40	2.0	41	93	6	143	46	4	2	44	1.37
11249583--11249608	2	13.0	2	100	0	52	50	0	0	50	1.00
11254639--11254672	5	7.0	5	86	6	52	2	79	0	17	0.86
11255828--11256194	92	4.0	91	83	2	448	24	11	12	51	1.72
11257014--11257100	27	3.2	27	77	9	86	42	9	8	40	1.66
11257028--11257167	27	5.2	28	76	7	110	42	9	10	38	1.71
11257082--11257166	26	3.2	25	71	12	64	38	9	12	38	1.76
11260842--11260941	50	2.0	50	94	0	173	44	17	9	30	1.79
11262133--11262163	4	7.8	4	92	0	53	51	25	0	22	1.48
11262079--11262233	84	1.8	84	85	0	220	48	21	3	25	1.67
11266611--11266861	105	2.4	105	89	0	385	16	25	23	33	1.96
11269465--11269489	3	8.3	3	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11269864--11269899	17	2.1	17	89	0	54	52	0	0	47	1.00
11270720--11270760	11	3.6	11	83	3	55	41	2	0	56	1.13
11270385--11270785	223	1.8	215	84	8	540	42	5	4	46	1.49
11278850--11278895	20	2.3	20	92	0	74	30	4	21	43	1.72
11284154--11284220	35	1.9	34	90	3	107	29	1	8	59	1.37
11287944--11288015	26	2.8	26	85	2	92	38	12	15	33	1.85
11288057--11288107	18	2.8	18	75	0	57	39	27	17	15	1.90
11294174--11294211	3	12.7	3	100	0	76	34	0	0	65	0.93
11294574--11294616	20	2.2	20	91	0	68	37	6	11	44	1.68
11294677--11294710	2	17.0	2	100	0	68	50	0	0	50	1.00
11295134--11295244	57	1.9	57	96	0	204	32	14	11	41	1.82
11295158--11295243	29	3.0	29	66	30	76	34	13	10	40	1.80
11304352--11304416	34	1.9	34	83	0	85	29	18	20	32	1.96
11304761--11304792	15	2.1	15	94	0	55	25	31	6	37	1.81
11305363--11305412	23	2.1	25	82	14	61	30	6	2	62	1.31
11305591--11305644	3	18.7	3	74	14	51	27	5	0	66	1.13
11309303--11309575	145	1.9	146	86	2	388	35	15	12	37	1.84
11309742--11309831	37	2.3	39	75	7	103	60	5	15	18	1.55
11313943--11314008	33	2.0	34	88	5	100	34	28	7	28	1.85
11319799--11319862	28	2.3	28	100	0	128	31	28	6	34	1.82
11321788--11321849	25	2.5	25	89	5	90	32	17	8	41	1.79
11326320--11326381	25	2.5	25	89	5	90	32	17	8	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11347665--11347706	18	2.4	18	84	4	50	26	0	2	71	0.98
11354737--11354781	20	2.3	19	81	11	54	57	13	11	17	1.64
11357353--11357471	2	59.5	2	87	6	143	47	2	0	44	1.22
11357529--11357684	63	2.5	63	89	0	240	24	30	17	27	1.97
11359129--11359187	11	5.0	12	70	17	52	77	0	1	20	0.85
11359128--11359190	20	3.0	22	77	9	69	76	0	1	22	0.88
11359130--11359191	18	3.7	17	79	14	67	77	0	1	20	0.85
11362372--11362447	28	2.8	28	93	2	127	30	9	25	35	1.87
11364521--11364583	18	3.4	18	76	8	63	39	6	1	52	1.37
11366996--11367033	19	2.0	19	94	0	67	28	0	28	42	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54