genome.fa.s7.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  30  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12495327--12495356	16	1.9	16	93	6	53	13	3	16	66	1.37
12497040--12497129	31	2.9	31	75	5	92	28	24	24	22	1.99
12497103--12497145	19	2.3	18	84	15	52	32	20	20	25	1.97
12498400--12498438	17	2.4	16	87	8	53	38	10	0	51	1.36
12498398--12498442	17	2.6	18	80	20	51	37	8	0	53	1.32
12501088--12501131	10	4.4	10	82	0	52	9	9	0	81	0.87
12511048--12511077	2	15.5	2	93	6	53	46	0	0	53	1.00
12513293--12513371	32	2.5	32	85	0	113	46	27	17	7	1.75
12516914--12516947	2	17.0	2	87	0	50	44	2	2	50	1.32
12516995--12517176	42	4.3	42	84	2	222	20	35	20	23	1.96
12517015--12517183	42	4.0	42	88	0	230	20	36	20	22	1.96
12520769--12520870	38	2.6	39	84	6	136	23	37	15	23	1.93
12520848--12521016	70	2.4	70	94	0	284	24	45	11	17	1.82
12521481--12521510	14	2.1	14	100	0	60	36	30	6	26	1.82
12521841--12521885	19	2.4	19	92	0	81	51	8	22	17	1.73
12525203--12525227	13	1.9	13	100	0	50	48	8	0	44	1.32
12530938--12530989	26	2.0	27	84	3	70	48	5	11	34	1.63
12532830--12532887	31	1.9	29	86	6	80	37	5	6	50	1.52
12538698--12538757	3	20.7	3	77	13	63	30	3	0	66	1.07
12542488--12542527	7	5.6	7	96	3	71	60	2	12	25	1.45
12543862--12543900	17	2.2	18	95	4	71	48	20	20	10	1.78
12544321--12544395	39	1.9	39	91	0	123	38	20	18	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12544439--12544495	22	2.6	22	100	0	114	24	29	21	24	1.99
12544767--12544826	23	2.6	23	91	0	93	33	40	1	25	1.66
12545719--12545745	3	9.0	3	100	0	54	66	0	33	0	0.92
12546669--12546698	13	2.2	14	94	5	53	36	3	0	60	1.14
12548835--12548889	21	2.6	21	82	2	56	43	0	0	56	0.99
12551637--12551747	53	2.1	54	86	1	152	65	9	10	14	1.46
12553341--12553386	12	3.9	12	83	13	60	28	2	0	69	1.00
12553330--12553388	18	3.6	17	79	20	65	25	1	0	72	0.93
12555351--12555395	23	2.0	23	86	0	63	26	4	24	44	1.72
12555554--12555609	28	2.1	28	83	6	71	33	8	19	37	1.83
12555639--12555933	55	5.4	54	78	7	276	32	10	17	40	1.83
12555639--12555937	82	3.7	82	81	3	343	32	10	17	40	1.83
12555639--12555948	27	11.5	27	81	4	288	31	11	17	39	1.85
12559054--12559180	42	3.0	41	87	2	182	25	22	30	21	1.98
12559054--12559207	84	1.8	84	83	2	202	25	21	31	21	1.98
12559729--12559768	19	2.1	19	85	0	53	27	22	27	22	1.99
12564023--12564096	3	24.7	3	77	10	71	27	4	2	66	1.23
12564007--12564096	9	10.6	9	70	20	50	24	3	5	66	1.28
12565274--12565310	19	1.9	19	88	0	56	13	0	2	83	0.74
12572799--12572839	21	2.1	19	86	9	55	29	0	9	60	1.28
12583702--12583726	6	4.2	6	100	0	50	32	0	0	68	0.90
12585076--12585547	180	2.6	179	81	5	515	37	14	14	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12586805--12586914	58	1.9	57	92	1	184	35	7	17	40	1.77
12588722--12588789	34	2.0	34	82	0	82	29	10	27	32	1.90
12597940--12597977	19	2.0	19	100	0	76	42	31	0	26	1.56
12605796--12605829	2	17.0	2	93	0	59	47	0	2	50	1.16
12609378--12609411	9	3.8	9	88	0	50	20	0	2	76	0.92
12611568--12611615	15	3.3	15	74	11	55	39	27	2	31	1.68
12615157--12615203	2	23.5	2	100	0	94	48	0	0	51	1.00
12615310--12615374	34	2.0	34	93	6	116	38	4	12	44	1.63
12619035--12619230	35	5.8	34	72	12	170	23	13	27	35	1.92
12619075--12619245	32	5.2	32	78	10	200	22	13	27	36	1.91
12619032--12619245	67	3.2	67	93	0	365	21	12	27	37	1.90
12622645--12622697	28	1.9	27	88	3	79	28	22	18	30	1.98
12622742--12622787	20	2.3	20	88	7	67	45	17	4	32	1.68
12628137--12628180	22	2.0	22	86	0	61	43	18	6	31	1.76
12630682--12630734	28	1.9	27	88	3	79	28	22	18	30	1.98
12630779--12630824	20	2.3	20	88	7	67	45	17	4	32	1.68
12639013--12639050	19	2.0	19	89	0	58	42	26	0	31	1.56
12645718--12645814	46	2.1	46	98	0	185	42	29	7	20	1.79
12651526--12651559	11	3.0	12	91	8	54	61	14	23	0	1.33
12654075--12654228	60	2.6	60	85	0	200	32	20	23	23	1.98
12657175--12657222	19	2.6	19	86	3	71	54	0	6	39	1.26
12660052--12660084	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12660130--12660162	2	16.5	2	100	0	66	48	0	0	51	1.00
12660032--12660188	80	2.0	79	96	2	282	36	7	9	45	1.66
12662981--12663018	19	2.0	19	89	0	58	28	2	28	39	1.70
12667686--12667724	18	2.2	18	90	0	60	7	28	15	48	1.72
12668298--12668343	20	2.3	20	92	0	74	30	4	21	43	1.72
12668388--12668440	28	1.9	27	88	3	79	32	18	22	26	1.97
12689425--12689462	19	2.0	19	94	0	67	28	0	28	42	1.56
12699826--12699873	24	1.9	25	87	8	71	45	4	0	50	1.21
12699826--12699880	25	2.2	25	84	9	69	41	3	0	54	1.18
12699826--12699887	25	2.5	24	77	12	63	40	3	1	54	1.26
12699965--12700016	22	2.4	22	81	12	54	53	1	0	44	1.11
12701569--12701618	27	1.9	27	88	8	77	68	0	2	30	1.01
12703775--12704256	243	2.0	241	96	0	883	27	20	15	36	1.93
12704499--12704544	22	2.1	22	100	0	92	34	13	13	39	1.83
12706193--12706377	60	3.1	60	82	1	228	24	31	16	28	1.96
12706744--12706777	2	17.5	2	93	6	61	50	0	0	50	1.00
12707116--12707293	69	2.6	69	86	2	241	3	37	3	55	1.35
12707273--12707332	10	6.1	10	79	11	70	0	26	0	73	0.84
12707267--12707304	6	6.2	6	87	6	58	0	21	0	78	0.74
12707195--12707393	87	2.3	84	81	9	222	2	32	4	61	1.26
12707408--12707469	12	5.0	12	81	14	63	0	24	0	75	0.80
12707408--12707473	19	3.6	18	79	16	73	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12707411--12707469	26	2.4	24	81	16	75	0	25	0	74	0.82
12714268--12714298	16	1.9	16	100	0	62	0	25	0	74	0.82
12714269--12714311	16	2.6	16	88	3	59	0	32	0	67	0.91
12714199--12714384	69	2.7	69	86	9	245	4	33	1	60	1.25
12714333--12714401	18	3.7	18	86	3	93	1	24	0	73	0.91
12714266--12714471	106	1.9	107	89	2	317	3	34	1	60	1.22
12714369--12714531	70	2.3	70	87	3	240	3	38	2	55	1.29
12714199--12714550	176	2.0	173	84	4	458	3	35	1	58	1.27
12714508--12714554	22	2.1	23	84	4	60	0	27	0	72	0.85
12714657--12714718	12	5.0	12	75	19	56	0	22	1	75	0.88
12714657--12714691	13	2.7	13	91	8	54	0	22	0	77	0.78
12714657--12714718	19	3.3	18	77	16	63	0	22	1	75	0.88
12714660--12714722	32	2.0	31	90	9	101	0	25	1	73	0.93
12715913--12716025	58	1.9	58	94	0	199	38	15	9	36	1.81
12725526--12725584	28	2.1	29	87	6	86	23	22	22	32	1.98
12725628--12725665	19	2.0	19	94	0	67	39	31	2	26	1.70
12731005--12731048	22	2.0	22	86	0	61	43	18	6	31	1.76
12735874--12735917	18	2.4	19	80	3	54	29	15	9	45	1.77
12737851--12737875	13	1.9	13	100	0	50	44	0	8	48	1.32
12740486--12740650	81	2.0	81	86	4	226	24	13	36	25	1.92
12740620--12740712	35	2.6	35	77	3	105	25	10	34	29	1.90
12745505--12745550	18	2.5	18	86	10	58	80	2	13	4	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12747667--12747719	21	2.5	22	78	3	63	39	28	5	26	1.79
12747702--12747818	21	5.3	21	76	9	99	31	22	12	33	1.92
12747710--12747836	23	5.7	23	74	9	102	33	22	13	30	1.92
12747822--12748207	101	3.8	101	80	4	314	32	17	15	34	1.91
12748204--12748264	21	2.9	21	80	0	68	32	27	11	27	1.91
12748291--12748397	50	2.1	48	88	10	153	24	6	21	47	1.74
12748317--12748431	52	2.3	50	85	8	144	27	5	21	45	1.73
12761314--12761353	19	2.1	19	95	0	71	20	35	0	45	1.51
12768955--12768994	21	1.9	21	84	0	53	47	2	7	42	1.45
12774475--12774506	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54