genome.fa.s7.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  23  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9978062--9978274	74	2.9	74	81	7	227	40	16	16	25	1.90
9985987--9986023	18	2.0	19	94	5	67	72	0	0	27	0.84
9985993--9986035	19	2.3	19	84	4	52	74	0	4	20	1.00
9987329--9987482	51	3.0	51	81	2	184	28	20	15	35	1.93
9987464--9987565	23	4.1	24	75	14	84	22	26	15	35	1.94
9987470--9987576	23	4.3	23	67	19	63	22	28	14	34	1.94
9987518--9987578	29	2.1	29	87	6	88	21	29	13	36	1.91
9987470--9987565	52	1.9	48	83	8	120	22	27	15	34	1.95
9987930--9988133	81	2.5	81	90	1	311	41	8	10	40	1.69
9989353--9989519	84	2.0	84	85	1	228	36	17	5	40	1.73
9993447--9993525	34	2.3	34	86	0	95	39	21	15	24	1.91
9994812--9994849	2	19.0	2	94	0	67	47	0	0	52	1.00
9998892--9998936	23	2.0	22	83	12	56	44	0	4	51	1.21
10000009--10000089	33	2.5	33	89	0	126	38	18	4	38	1.73
10004918--10005049	35	3.8	35	82	2	122	47	18	12	21	1.81
10004956--10005065	35	3.1	34	75	12	98	49	19	12	19	1.79
10004921--10005054	70	1.9	70	83	3	171	47	19	12	20	1.82
10005279--10005346	29	2.3	29	100	0	136	14	26	10	48	1.76
10012890--10012928	18	2.2	18	100	0	78	33	5	23	38	1.77
10020973--10021025	26	2.0	26	78	7	54	50	3	3	41	1.38
10032712--10032922	27	7.7	27	75	5	163	42	9	9	38	1.70
10032704--10032881	82	2.2	84	83	6	229	40	10	8	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10032774--10032923	56	2.7	57	87	6	218	42	9	8	40	1.68
10036444--10036497	25	2.2	25	89	0	81	57	1	7	33	1.37
10039357--10039410	17	3.4	16	77	7	56	51	0	0	48	1.00
10040492--10040533	19	2.2	19	91	0	66	30	30	0	38	1.58
10042587--10042705	60	2.0	60	90	3	186	22	32	20	24	1.98
10056789--10056826	3	12.7	3	100	0	76	31	0	0	68	0.90
10057012--10057053	16	2.6	16	88	3	57	0	26	0	73	0.83
10057012--10057053	6	6.4	7	84	13	54	0	26	0	73	0.83
10068041--10068109	19	3.6	19	84	0	84	27	24	7	40	1.81
10070197--10070244	22	2.2	22	81	7	53	39	10	8	41	1.69
10079288--10079328	18	2.3	18	84	16	50	51	0	0	48	1.00
10089109--10089154	2	23.0	2	95	0	83	47	0	0	52	1.00
10089273--10089336	2	32.0	2	81	6	76	46	4	1	46	1.33
10089277--10089321	17	2.6	18	86	10	67	53	0	2	44	1.13
10089275--10089322	19	2.5	19	93	0	78	52	0	2	45	1.12
10089266--10089322	21	2.7	21	89	5	80	56	0	1	42	1.10
10090031--10090057	3	9.0	3	100	0	54	33	0	0	66	0.92
10091591--10091658	20	3.5	18	73	22	66	55	1	2	39	1.24
10091600--10091664	20	3.2	20	75	16	78	55	1	3	40	1.25
10091608--10091675	22	3.2	22	74	16	70	55	2	7	33	1.42
10093912--10093936	2	12.5	2	100	0	50	52	0	0	48	1.00
10094018--10094044	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10095220--10095246	3	9.0	3	100	0	54	66	0	0	33	0.92
10096488--10096537	3	16.7	3	91	0	82	34	4	0	62	1.14
10127713--10127949	60	4.0	60	87	2	318	24	33	17	24	1.96
10128616--10128661	20	2.3	20	88	3	67	0	32	0	67	0.91
10128682--10128720	20	1.9	21	89	5	62	0	23	0	76	0.78
10128851--10128894	9	4.8	9	86	5	52	0	18	0	81	0.68
10128975--10129052	19	3.8	20	76	18	65	2	25	0	71	0.98
10128973--10129052	26	3.1	26	84	10	85	2	25	0	72	0.97
10129346--10129385	21	1.9	21	84	0	53	62	10	17	10	1.53
10132561--10132663	54	1.9	54	90	4	163	21	14	41	22	1.89
10140041--10140075	5	7.2	5	90	6	54	60	2	0	37	1.12
10140461--10140505	19	2.4	19	92	0	72	31	8	4	53	1.52
10141866--10142295	214	2.0	214	83	2	542	31	16	14	37	1.89
10152829--10152853	4	6.2	4	100	0	50	24	0	24	52	1.48
10152888--10152923	2	18.0	2	88	0	54	50	5	0	44	1.25
10152955--10153005	8	6.6	8	86	8	79	39	0	11	49	1.40
10152950--10153008	14	4.1	14	80	8	73	40	0	11	47	1.40
10152950--10153008	22	2.7	22	91	0	100	40	0	11	47	1.40
10158445--10158484	20	2.1	19	85	4	53	35	20	15	30	1.93
10170192--10170256	33	2.0	33	93	0	112	43	13	4	38	1.65
10170330--10170387	30	1.9	30	86	6	82	55	12	3	29	1.53
10185725--10185764	20	2.1	19	86	13	55	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10187441--10187774	144	2.3	144	98	0	650	26	17	10	45	1.80
10194689--10194747	25	2.5	24	78	13	59	33	1	1	62	1.15
10195036--10195067	17	1.9	16	93	6	55	37	3	0	59	1.13
10198353--10199007	217	3.1	215	83	7	894	41	8	4	45	1.55
10198972--10199018	2	23.5	2	86	0	67	48	4	0	46	1.21
10200864--10200927	18	3.6	18	76	0	56	42	23	17	17	1.89
10205132--10205178	11	4.4	11	83	5	69	68	10	21	0	1.20
10205132--10205178	21	2.2	22	88	3	69	68	10	21	0	1.20
10208165--10208203	19	2.1	19	90	0	60	23	23	0	53	1.46
10208453--10208504	2	26.0	2	100	0	104	50	0	0	50	1.00
10208953--10209038	15	5.5	15	73	20	77	58	2	31	8	1.40
10208954--10209009	18	3.3	18	66	19	57	58	1	32	7	1.35
10208969--10209029	17	3.7	18	77	18	78	57	3	31	8	1.44
10208954--10209038	32	2.7	32	98	0	161	58	2	30	8	1.40
10209689--10209859	85	2.0	85	89	1	263	56	4	8	30	1.48
10210925--10210964	15	2.4	17	84	16	57	57	0	2	40	1.12
10211429--10211492	29	2.2	28	81	10	76	59	0	0	40	0.97
10219544--10219763	27	8.1	28	70	15	126	39	15	9	35	1.80
10219573--10219781	27	7.7	27	70	14	128	40	14	8	35	1.77
10223299--10223352	28	2.0	27	85	3	72	40	3	1	53	1.29
10227718--10227769	21	2.5	21	77	0	59	34	34	1	28	1.69
10231026--10231102	33	2.3	33	82	4	93	33	20	6	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10233945--10234077	66	2.0	66	98	0	257	30	27	12	30	1.93
10234380--10234511	30	4.4	30	74	12	101	37	12	17	32	1.87
10234435--10234508	29	2.5	30	75	2	78	37	13	16	32	1.87
10235281--10235331	14	3.4	14	78	19	57	66	3	23	5	1.30
10243251--10243281	6	5.2	6	92	0	53	35	45	0	19	1.51
10243510--10243666	40	4.0	41	80	6	155	60	19	1	19	1.43
10243560--10243667	37	2.8	38	81	8	121	62	22	1	13	1.41
10256942--10256992	15	3.4	15	83	5	59	50	15	1	31	1.55
10261486--10261517	15	2.1	16	94	5	57	46	0	6	46	1.27
10261745--10261791	20	2.4	21	79	13	55	55	0	2	42	1.12
10264392--10264428	13	3.1	13	88	11	53	78	0	0	21	0.75
10275127--10275186	30	2.1	29	81	6	68	31	8	21	38	1.83
10285694--10285900	60	3.5	60	71	6	179	36	10	18	34	1.85
10285715--10285886	30	5.8	30	70	9	111	38	8	17	34	1.81
10286301--10286346	23	2.0	24	91	4	76	36	19	6	36	1.78
10290755--10290817	30	2.1	29	85	2	81	38	7	19	34	1.81
10291390--10291439	24	2.1	24	84	0	64	44	20	6	30	1.75
10293684--10293723	20	2.0	20	95	0	71	32	0	12	55	1.38
10294305--10294347	12	3.7	11	84	6	50	6	9	2	81	0.95
10303837--10303933	48	2.0	48	97	0	185	28	14	23	32	1.94
10306600--10306750	63	2.3	63	85	7	189	41	5	3	49	1.46
10307402--10307466	26	2.5	26	84	2	85	46	7	9	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10307356--10307573	80	2.8	78	74	11	194	44	10	7	37	1.68
10307513--10307571	29	2.0	30	83	9	77	49	11	0	38	1.40
10307585--10307656	28	2.6	27	80	6	72	37	5	11	45	1.63
10315895--10316007	36	3.2	36	73	7	113	40	7	13	38	1.74
10321335--10321493	37	4.4	36	74	12	130	42	11	11	35	1.77
10322985--10323023	20	2.0	20	100	0	78	20	33	20	25	1.97
10323523--10323629	29	3.6	30	75	12	80	46	5	15	31	1.69
10331466--10331534	33	2.1	33	89	2	104	39	28	4	27	1.76
10336990--10337026	2	18.5	2	100	0	74	51	0	0	48	1.00
10339448--10339603	51	3.0	53	81	4	156	30	17	13	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54