genome.fa.s7.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  40  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16070143--16070213	36	2.0	36	97	0	133	50	18	8	22	1.73
16070560--16070585	4	6.5	4	100	0	52	23	50	0	26	1.50
16079771--16080068	43	7.1	43	80	10	298	26	33	14	25	1.94
16079812--16080049	124	1.9	124	88	5	356	26	34	14	24	1.94
16079740--16080055	167	1.9	166	90	1	508	26	34	14	24	1.94
16081626--16081654	2	15.0	2	92	7	51	51	0	0	48	1.00
16081694--16081962	43	6.3	43	86	0	340	27	30	15	26	1.96
16081694--16081961	129	2.1	129	87	0	383	27	30	16	26	1.96
16082765--16082808	20	2.1	21	87	4	63	45	6	22	25	1.77
16084509--16084543	2	17.5	2	100	0	70	51	0	0	48	1.00
16084573--16084704	43	3.1	43	85	0	165	25	16	34	23	1.95
16084732--16084764	2	16.5	2	93	0	57	48	3	0	48	1.17
16085999--16086191	42	4.6	42	87	0	215	21	33	20	25	1.97
16085998--16086191	84	2.3	84	86	0	262	21	33	20	25	1.97
16095491--16095587	39	2.5	39	98	0	185	32	15	23	27	1.95
16095897--16095989	42	2.2	42	90	1	141	23	34	18	23	1.96
16100879--16100923	19	2.4	19	92	0	72	46	0	11	42	1.39
16100888--16100926	19	2.1	19	100	0	78	43	0	10	46	1.37
16100891--16100933	19	2.2	19	91	4	68	46	2	6	44	1.43
16103329--16103377	22	2.2	22	85	0	62	20	10	22	46	1.80
16112304--16112356	22	2.4	22	93	0	88	33	22	9	33	1.86
16112745--16112773	14	2.0	15	93	6	51	48	10	0	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16116258--16116413	37	4.2	37	88	3	242	26	35	9	28	1.88
16118374--16118481	56	1.9	56	86	0	153	27	25	8	37	1.85
16119753--16119878	42	3.0	42	82	4	146	19	20	34	24	1.96
16121963--16121994	11	2.9	11	95	0	55	31	0	0	68	0.90
16123564--16123804	120	2.0	120	97	1	448	40	15	12	30	1.85
16124192--16124314	42	2.9	42	84	2	149	24	30	17	26	1.97
16127630--16127693	29	2.2	29	88	2	94	43	18	7	29	1.78
16140534--16140745	58	3.7	58	86	3	322	23	23	25	27	2.00
16140534--16140740	113	1.8	113	92	0	351	23	23	25	28	2.00
16144371--16144586	58	3.8	57	89	3	310	24	24	24	26	2.00
16144376--16144587	113	1.9	113	91	0	352	24	25	24	26	2.00
16153963--16154139	74	2.4	73	78	9	189	19	15	19	45	1.86
16157833--16157876	22	2.0	22	86	0	61	18	27	4	50	1.66
16159670--16159716	22	2.2	22	88	3	69	27	25	21	25	1.99
16166113--16166196	42	2.0	42	90	0	132	19	21	35	23	1.96
16177324--16177475	37	4.2	36	86	5	209	26	10	38	24	1.88
16177325--16177472	71	2.1	71	89	0	233	27	10	37	24	1.88
16177599--16177645	24	2.0	24	87	4	69	34	12	17	36	1.87
16179918--16179971	28	1.9	29	88	7	85	31	24	20	24	1.98
16189370--16189564	74	2.6	74	79	8	193	21	17	17	43	1.88
16212662--16212704	21	2.0	21	81	0	50	32	9	32	25	1.88
16221356--16221389	16	2.0	18	88	11	54	35	5	35	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16224050--16224104	28	2.0	28	89	7	85	30	21	20	27	1.98
16225227--16225251	13	1.9	13	100	0	50	44	0	8	48	1.32
16226975--16227077	38	2.6	40	85	8	133	24	39	15	20	1.91
16230769--16230871	38	2.6	40	83	8	133	25	40	14	19	1.89
16237564--16237669	38	2.7	38	79	5	115	23	35	15	25	1.94
16242693--16242728	2	18.0	2	100	0	72	50	0	0	50	1.00
16245866--16246002	35	3.9	35	91	1	195	27	37	10	23	1.88
16247979--16248027	2	24.5	2	100	0	98	48	0	0	51	1.00
16261728--16261783	2	28.0	2	77	0	58	50	7	1	41	1.40
16261716--16261780	18	3.6	18	80	0	76	50	10	1	36	1.47
16261854--16261878	2	12.5	2	100	0	50	52	0	0	48	1.00
16261910--16261965	2	28.0	2	77	0	58	50	7	1	41	1.40
16261724--16262083	182	2.0	181	100	0	711	45	7	13	33	1.72
16261916--16261965	22	2.3	22	89	0	73	50	8	2	40	1.43
16262036--16262060	2	12.5	2	100	0	50	52	0	0	48	1.00
16262060--16262085	2	13.0	2	100	0	52	50	0	50	0	1.00
16264389--16264460	37	1.9	37	91	0	117	30	27	15	26	1.96
16275851--16276072	71	3.1	71	80	2	275	36	7	12	43	1.70
16275858--16276075	35	6.2	35	78	2	220	36	7	12	43	1.70
16275880--16276095	107	2.0	106	81	2	245	36	8	13	41	1.75
16277343--16277373	2	15.5	2	93	0	53	48	0	3	48	1.17
16277377--16277439	20	3.2	20	90	2	101	30	41	3	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16277438--16277547	43	2.6	43	89	2	159	20	38	19	22	1.94
16286007--16286044	19	2.0	19	94	0	67	28	0	28	42	1.56
16288647--16288687	15	2.7	16	88	7	59	26	2	19	51	1.59
16288643--16288688	15	3.1	15	81	9	58	23	2	17	56	1.52
16305200--16305252	19	2.8	19	100	0	106	45	0	0	54	0.99
16307336--16307481	35	4.2	35	80	13	151	35	6	11	46	1.65
16307445--16307503	23	2.6	22	78	5	64	37	6	11	44	1.68
16307477--16307556	35	2.3	35	84	2	97	37	6	13	42	1.70
16309209--16309258	19	2.6	19	78	12	66	12	38	8	42	1.71
16310121--16310223	38	2.6	39	83	3	127	24	19	35	20	1.95
16311680--16311715	14	2.6	14	86	0	54	47	8	2	41	1.48
16318622--16318676	28	2.0	28	85	7	76	29	21	23	25	1.99
16324385--16324416	14	2.2	15	94	5	57	0	37	18	43	1.51
16326843--16326889	17	2.6	18	80	10	60	57	0	8	34	1.29
16327857--16327910	28	2.0	27	88	3	81	29	18	22	29	1.97
16334483--16334520	19	2.0	19	100	0	76	26	0	31	42	1.56
16334563--16334637	28	2.7	28	93	0	123	30	16	25	28	1.96
16334564--16334650	28	3.1	28	90	3	122	29	20	25	24	1.99
16361293--16361395	38	2.6	40	81	3	120	21	14	38	25	1.91
16366074--16366123	20	2.5	20	100	0	100	64	0	12	24	1.27
16374771--16374872	38	2.6	38	87	3	141	22	39	16	21	1.92
16377509--16377627	37	3.2	36	88	4	175	26	35	9	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16378456--16378493	20	1.9	20	94	0	67	44	10	28	15	1.80
16381042--16381115	37	2.0	36	84	2	94	36	18	10	33	1.86
16382183--16382255	22	3.4	21	70	19	62	42	9	10	36	1.73
16382190--16382257	20	3.3	20	72	11	66	42	8	11	36	1.73
16387079--16387117	11	3.6	11	82	6	53	0	15	0	84	0.62
16387839--16387877	17	2.2	18	90	4	62	0	30	0	69	0.89
16389644--16389684	21	1.9	21	85	5	55	48	9	24	17	1.76
16389642--16389689	21	2.3	20	75	10	51	54	8	22	14	1.67
16392355--16392396	21	1.9	23	85	9	61	28	16	9	45	1.79
16394455--16394552	34	2.9	34	87	3	135	36	25	10	27	1.88
16397134--16397171	19	2.0	19	94	0	67	28	0	28	42	1.56
16402126--16402248	34	3.5	33	67	18	79	32	26	14	26	1.95
16405017--16405178	73	2.2	73	86	4	202	24	16	17	41	1.89
16405036--16405199	73	2.2	73	85	2	231	22	16	18	42	1.89
16407723--16407858	35	3.9	36	77	4	127	23	28	8	38	1.85
16409428--16409453	7	3.7	7	100	0	52	11	0	0	88	0.52
16415471--16415605	35	3.9	34	76	6	119	24	32	8	34	1.85
16420899--16420958	30	2.1	29	81	6	68	31	8	21	38	1.83
16435856--16436121	45	5.5	45	73	17	212	23	33	15	26	1.95
16435868--16436125	99	2.6	99	90	1	403	23	33	16	26	1.95
16435908--16436096	54	3.7	53	76	12	205	23	35	14	25	1.94
16441462--16441548	45	1.9	46	88	2	131	25	34	13	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16445753--16445908	73	2.2	73	81	8	176	23	17	19	39	1.93
16445774--16445932	73	2.2	73	85	4	205	25	19	17	37	1.93
16447075--16447118	21	2.1	21	87	8	63	34	9	15	40	1.79
16459707--16459831	43	2.9	43	81	8	139	25	18	35	20	1.95
16460137--16460193	22	2.6	22	97	0	105	17	22	33	26	1.96
16467333--16467373	22	1.9	21	85	5	55	51	0	17	31	1.46
16472501--16472653	54	2.8	53	93	2	252	20	12	40	26	1.88
16480420--16480550	18	7.4	18	65	21	62	67	1	29	1	1.09
16480503--16480534	15	2.1	16	94	5	57	78	0	21	0	0.76
16480489--16480546	18	3.0	21	75	17	70	72	0	27	0	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54