genome.fa.s7.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  33  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13418174--13418282	54	2.0	54	94	0	191	25	15	16	42	1.88
13419041--13419086	22	2.1	22	87	0	65	21	23	23	30	1.99
13421206--13421230	13	1.9	13	100	0	50	48	0	0	52	1.00
13422383--13422446	28	2.2	29	83	8	78	43	18	7	29	1.78
13425904--13425943	20	2.0	20	85	0	53	75	0	17	7	1.03
13426890--13426945	28	2.0	28	100	0	112	39	3	21	35	1.71
13433895--13433924	6	4.8	6	95	4	51	86	0	0	13	0.57
13434368--13434430	13	4.9	13	79	11	67	73	1	4	20	1.11
13434369--13434425	21	2.9	21	76	19	61	73	1	5	19	1.11
13434723--13434778	11	5.1	11	78	4	51	73	1	3	21	1.08
13435715--13435746	16	2.0	16	100	0	64	31	18	12	37	1.88
13436231--13437483	512	2.5	511	91	2	2007	34	15	13	36	1.86
13441427--13441463	18	2.1	18	89	0	56	13	13	0	72	1.11
13443531--13443632	35	2.9	34	80	7	107	27	32	13	26	1.94
13452967--13453010	23	2.0	23	86	4	63	29	40	25	4	1.75
13460020--13460189	34	4.9	34	79	5	189	27	32	12	27	1.92
13460021--13460189	68	2.4	69	87	1	241	27	33	12	27	1.92
13471359--13471387	3	9.7	3	100	0	58	0	34	0	65	0.93
13473276--13473331	2	27.5	2	96	3	103	0	48	0	50	1.01
13475223--13475273	22	2.3	22	86	6	68	49	29	9	11	1.72
13475214--13475273	22	2.8	21	76	5	57	45	31	8	15	1.75
13487618--13487808	94	2.1	93	92	2	321	32	12	18	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13489919--13490186	68	3.9	68	83	0	329	35	17	9	37	1.83
13502148--13502211	13	4.8	13	81	14	78	48	1	3	46	1.27
13502148--13502191	2	22.0	2	90	9	72	50	2	0	47	1.13
13504911--13504940	15	1.9	16	93	6	53	23	0	3	73	0.98
13505464--13505509	24	1.9	24	95	0	83	30	13	30	26	1.93
13507086--13507137	26	2.0	26	92	0	86	21	15	7	55	1.64
13507079--13507144	26	2.8	23	77	18	64	22	15	6	56	1.61
13507501--13508017	257	2.0	256	88	2	770	29	11	22	36	1.89
13510064--13510097	13	2.6	13	95	0	59	2	17	0	79	0.86
13516738--13516797	30	2.0	30	96	0	111	31	30	15	23	1.95
13517400--13517559	48	3.5	47	73	14	156	40	25	8	25	1.84
13517400--13517560	88	1.8	87	90	1	259	40	25	8	24	1.84
13520895--13520927	2	16.5	2	100	0	66	51	0	0	48	1.00
13522515--13522549	18	1.9	18	88	0	52	17	22	8	51	1.72
13522642--13522694	24	2.2	24	100	0	106	33	30	3	32	1.76
13523904--13523972	33	2.1	32	84	7	86	30	14	1	53	1.50
13531379--13531613	129	1.8	129	91	0	389	25	28	33	13	1.93
13545819--13545843	12	2.1	12	100	0	50	68	8	0	24	1.16
13546281--13546332	15	3.1	16	78	10	52	75	0	1	23	0.91
13546275--13546336	19	3.2	19	81	6	72	74	0	3	22	0.96
13552410--13552442	10	3.4	10	87	4	50	81	0	0	18	0.68
13553888--13553927	2	20.0	2	94	0	71	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13561934--13562008	30	2.5	30	84	0	87	37	8	5	49	1.55
13562064--13562138	33	2.3	33	80	0	87	41	6	14	37	1.72
13565784--13565836	11	4.9	11	77	13	65	26	1	1	69	1.09
13565784--13565853	32	2.2	32	80	11	83	24	4	1	70	1.14
13565821--13565877	22	2.6	22	81	10	64	19	10	0	70	1.16
13568218--13568256	2	19.5	2	100	0	78	48	0	0	51	1.00
13568370--13568783	38	10.9	38	84	7	468	42	17	15	24	1.88
13568370--13568778	75	5.4	74	84	5	473	43	17	15	23	1.87
13581390--13581416	13	2.1	13	100	0	54	55	7	0	37	1.28
13582570--13582635	28	2.3	28	81	2	69	43	19	7	28	1.78
13583516--13583568	11	4.9	11	77	13	65	28	1	1	67	1.11
13583508--13583568	16	3.8	16	76	8	61	27	1	3	67	1.16
13585011--13585232	122	1.8	122	95	0	399	26	41	9	22	1.84
13588613--13588649	19	1.9	19	88	0	56	37	18	43	0	1.51
13588686--13588741	24	2.4	24	87	3	78	51	0	0	48	1.00
13588686--13588743	23	2.5	23	86	5	64	53	0	0	46	1.00
13590458--13590628	83	2.0	84	84	3	220	32	9	14	42	1.79
13599003--13599462	256	1.8	251	83	7	617	35	11	7	46	1.67
13599974--13600033	30	2.1	29	81	6	68	31	8	21	38	1.83
13602705--13602753	22	2.3	22	92	3	82	46	4	10	38	1.57
13602745--13603676	250	3.7	247	81	5	993	34	13	7	44	1.72
13612207--13612248	15	2.7	15	75	17	50	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13622259--13622335	38	2.0	38	97	0	145	53	11	10	24	1.68
13624468--13624577	56	2.0	56	83	3	141	40	10	18	30	1.84
13633589--13633635	20	2.4	20	85	3	60	51	0	2	46	1.13
13652169--13652290	49	2.5	49	94	0	208	12	21	36	29	1.90
13653419--13653461	17	2.7	15	82	10	50	25	0	11	62	1.29
13664066--13664368	31	9.8	31	89	1	428	25	15	20	38	1.92
13670659--13670788	31	4.2	30	83	5	118	32	20	21	26	1.97
13670680--13670795	31	3.8	31	87	1	162	31	20	19	28	1.97
13672603--13672859	31	8.3	31	91	0	334	33	19	21	24	1.97
13675550--13675599	21	2.4	21	96	0	91	44	6	16	34	1.72
13676073--13676386	68	4.7	68	79	7	250	35	19	10	35	1.85
13685469--13685501	14	2.4	14	100	0	66	18	15	12	54	1.71
13688182--13688213	16	2.1	16	94	5	57	62	0	0	37	0.95
13688688--13688726	16	2.4	16	83	12	53	53	5	0	41	1.23
13690142--13690166	13	1.9	13	100	0	50	48	8	0	44	1.32
13693511--13693621	57	2.0	57	84	8	147	37	11	22	27	1.89
13694921--13694958	20	1.9	20	100	0	76	55	10	0	34	1.34
13708817--13708928	27	4.1	27	76	1	116	32	13	14	40	1.84
13709049--13709085	19	1.9	19	94	0	65	24	35	2	37	1.70
13712045--13712089	23	2.0	23	82	8	56	17	11	4	66	1.38
13713822--13713903	38	2.2	38	88	0	119	23	10	26	39	1.88
13722847--13722890	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13722938--13722973	2	18.0	2	100	0	72	50	0	0	50	1.00
13726439--13726463	12	2.1	12	100	0	50	44	32	8	16	1.76
13729131--13729187	27	2.1	28	86	3	80	38	17	15	28	1.91
13731971--13732020	2	25.0	2	95	0	82	50	46	0	4	1.20
13735566--13736956	496	2.8	493	92	2	2259	29	24	11	35	1.90
13740257--13740289	2	16.5	2	100	0	66	48	0	0	51	1.00
13741278--13741309	16	1.9	17	93	6	57	25	0	0	75	0.81
13744076--13744105	2	15.0	2	92	0	51	50	46	0	3	1.18
13749166--13749244	41	1.9	41	92	0	131	36	29	8	25	1.86
13750095--13750124	11	2.7	11	94	0	51	40	23	10	26	1.86
13750351--13750418	33	2.1	33	91	0	109	35	4	13	47	1.63
13751949--13751983	17	1.9	19	88	11	56	28	0	0	71	0.86
13757977--13758018	20	2.1	20	86	0	57	16	30	7	45	1.74
13758761--13758792	12	2.7	12	100	0	64	50	6	0	43	1.27
13769944--13770230	142	2.0	143	94	0	504	36	21	9	33	1.85
13771408--13771447	21	1.9	21	85	10	55	37	10	10	42	1.72
13777855--13777941	29	2.9	30	79	6	115	25	36	17	20	1.94
13800464--13800496	3	11.0	3	87	12	50	66	30	0	3	1.06
13801484--13801523	20	2.0	20	95	0	71	45	5	2	47	1.38
13810057--13810158	30	3.4	30	78	2	116	19	12	36	31	1.90
13811192--13811239	24	2.0	24	84	8	62	37	18	35	8	1.81
13817421--13817469	20	2.5	20	76	6	55	77	4	0	18	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13817700--13817730	2	15.5	2	100	0	62	48	0	0	51	1.00
13817819--13817857	14	2.8	14	84	0	51	76	5	5	12	1.11
13832358--13832416	28	2.1	28	81	9	66	27	20	22	30	1.98
13840922--13840955	2	17.0	2	100	0	68	50	0	0	50	1.00
13842001--13842069	23	3.0	23	75	12	61	23	8	20	47	1.77
13844942--13845094	76	2.0	76	85	2	209	28	17	16	37	1.92
13845362--13845424	23	2.7	23	85	4	83	11	6	28	53	1.60
13848327--13848481	43	3.3	49	87	9	163	23	19	32	23	1.97
13848354--13848501	43	3.4	43	93	1	235	25	17	33	22	1.96
13848770--13848830	22	3.0	21	77	20	67	29	22	22	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54