genome.fa.s7.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  42  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16836252--16836308	23	2.5	23	85	0	87	26	5	40	28	1.77
16843040--16843164	43	2.9	43	80	2	135	19	36	20	24	1.95
16851831--16851891	32	1.9	32	89	0	95	26	19	29	24	1.99
16851948--16852034	31	2.9	30	73	9	88	54	6	14	24	1.65
16854695--16854800	38	2.7	39	82	4	133	24	38	16	20	1.92
16855677--16855720	19	2.3	19	84	0	61	43	6	34	15	1.74
16857616--16857683	29	2.3	29	79	5	73	27	26	7	38	1.83
16857813--16857852	19	2.2	18	86	4	53	25	20	32	22	1.98
16858925--16858964	21	1.9	21	84	0	53	40	17	15	27	1.89
16876492--16876525	13	2.5	13	90	4	50	50	23	0	26	1.50
16876575--16876616	15	2.6	17	77	11	52	45	9	0	45	1.36
16876911--16876952	17	2.5	17	92	3	68	14	2	0	83	0.75
16877015--16877073	12	4.8	12	80	12	66	77	1	0	20	0.85
16877015--16877069	11	4.8	11	82	8	65	80	1	0	18	0.81
16882659--16882686	12	2.3	12	100	0	56	75	0	0	25	0.81
16883675--16883719	21	2.1	21	100	0	90	33	4	24	37	1.76
16887471--16887514	16	2.7	16	82	3	52	84	2	4	9	0.85
16893085--16893129	15	2.8	16	83	10	56	44	0	13	42	1.43
16895499--16895566	21	3.2	21	87	2	82	26	19	16	38	1.92
16901888--16901926	19	2.1	19	90	0	60	53	0	30	15	1.42
16902558--16902605	17	2.8	16	81	15	51	18	0	2	79	0.84
16902558--16902608	12	4.0	12	90	10	75	19	0	1	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16902995--16903029	16	2.4	14	86	13	52	45	0	0	54	0.99
16903007--16903072	21	3.0	21	72	14	62	40	1	0	57	1.08
16903028--16903065	17	2.3	17	86	4	51	44	2	0	52	1.14
16905963--16906202	120	2.0	120	90	2	374	21	15	15	47	1.82
16908733--16908757	13	1.9	13	100	0	50	40	8	4	48	1.51
16909774--16909816	21	2.0	21	86	0	59	34	11	25	27	1.91
16916600--16916828	116	1.9	120	86	6	335	62	1	4	31	1.26
16917163--16917677	23	22.5	22	79	7	250	34	14	29	20	1.93
16917195--16917698	46	11.0	46	76	7	348	34	14	29	21	1.93
16917209--16917677	69	6.8	67	78	9	405	34	14	30	21	1.93
16919456--16919526	23	3.1	23	81	4	81	35	15	28	21	1.94
16923145--16923250	38	2.7	39	86	2	151	22	16	37	22	1.94
16926757--16927181	69	6.1	71	77	7	367	41	15	18	25	1.89
16926757--16927181	140	3.1	137	81	7	493	41	15	18	25	1.89
16926996--16927181	71	2.7	70	80	5	207	42	17	16	23	1.88
16927141--16927221	40	2.0	40	85	0	108	44	16	17	22	1.86
16927311--16927393	41	2.0	41	90	0	130	43	8	24	24	1.81
16927540--16927570	13	2.4	13	94	0	53	58	16	12	12	1.64
16930816--16931220	156	2.6	156	87	2	578	32	17	13	36	1.88
16940283--16940327	23	2.0	22	82	4	54	66	15	6	11	1.42
16944741--16944773	16	2.0	17	94	5	59	36	6	0	57	1.23
16947649--16947765	60	1.9	61	85	1	164	32	22	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16947754--16947796	21	2.0	21	82	8	52	32	20	20	25	1.97
16948093--16948134	2	21.0	2	95	0	75	47	0	2	50	1.14
16948192--16948248	2	28.5	2	89	0	87	47	1	3	47	1.29
16955354--16955391	18	2.2	18	85	4	51	13	13	5	68	1.37
16961150--16961319	43	4.0	43	89	3	252	25	34	16	22	1.95
16961794--16961827	13	2.6	13	90	0	50	41	20	11	26	1.87
16972287--16972311	3	8.3	3	100	0	50	64	0	36	0	0.94
16972544--16972585	19	2.2	19	87	8	59	21	16	0	61	1.34
16975816--16975948	57	2.2	60	81	5	146	40	9	8	42	1.66
16978021--16978069	16	2.9	17	80	20	50	36	2	22	38	1.66
16978876--16978904	15	1.9	15	100	0	58	37	27	0	34	1.57
16979184--16979247	33	1.9	34	93	3	112	29	7	0	62	1.23
16979215--16979381	55	3.3	48	75	17	133	28	5	0	65	1.14
16979255--16979378	55	2.3	52	81	10	135	29	4	0	66	1.12
16979292--16979350	25	2.4	25	82	5	75	28	5	0	66	1.13
16979340--16979380	15	2.8	15	88	3	57	29	0	0	70	0.87
16979304--16979365	33	1.9	33	90	9	101	29	3	0	67	1.06
16982212--16982330	29	4.2	29	76	14	115	30	10	15	43	1.80
16982202--16982318	30	4.3	27	77	14	107	32	10	17	39	1.84
16982356--16982452	24	3.9	25	75	11	92	29	14	15	40	1.87
16982214--16982400	84	2.2	82	79	8	200	29	12	16	41	1.85
16982242--16982400	84	1.9	86	82	6	207	28	13	16	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16982356--16982450	50	1.9	50	91	4	156	29	13	15	41	1.86
17008111--17008225	43	2.7	43	79	2	124	26	14	33	25	1.94
17010988--17011151	76	2.1	77	89	2	258	39	7	13	40	1.72
17015108--17015145	20	1.9	20	100	0	76	34	13	10	42	1.78
17015503--17015539	18	2.0	19	89	5	58	40	2	16	40	1.62
17020408--17020448	20	2.0	20	95	0	73	29	39	21	9	1.86
17020757--17020848	41	2.3	39	83	3	103	11	17	33	36	1.86
17022486--17022513	2	14.0	2	100	0	56	50	0	0	50	1.00
17024683--17024778	42	2.2	44	87	7	135	38	18	8	34	1.81
17025104--17025137	14	2.4	14	95	0	59	47	20	8	23	1.78
17025130--17025374	52	4.7	51	80	5	269	46	22	7	22	1.77
17031528--17031565	18	2.1	18	95	0	67	36	18	31	13	1.89
17034008--17034037	14	2.1	14	93	0	51	66	0	10	23	1.21
17044396--17044552	54	2.9	53	89	1	233	19	14	42	23	1.88
17046615--17046657	20	2.1	21	86	4	61	32	2	23	41	1.67
17046671--17046809	42	3.3	40	83	7	163	25	19	32	22	1.97
17046671--17046828	43	3.7	43	87	2	205	25	18	32	22	1.97
17052004--17052119	57	2.1	56	85	1	151	39	13	9	37	1.78
17062663--17062865	43	4.7	43	80	5	187	25	20	33	20	1.97
17069674--17069714	20	2.0	20	90	0	64	43	12	0	43	1.41
17075536--17075579	20	2.2	20	95	0	79	27	4	20	47	1.69
17081712--17081768	28	2.1	27	78	12	62	31	24	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17093394--17093428	18	2.1	17	89	10	54	65	0	0	34	0.93
17095113--17095143	2	15.5	2	100	0	62	48	0	0	51	1.00
17108677--17108797	2	59.5	2	84	6	109	48	4	4	41	1.44
17111067--17111100	11	3.1	11	91	0	50	29	0	2	67	1.05
17118388--17118615	28	8.2	28	75	5	187	28	15	14	40	1.88
17118388--17118540	54	2.8	55	86	4	193	29	16	13	41	1.86
17118497--17118618	55	2.2	55	80	10	133	29	13	18	38	1.89
17120569--17120606	19	2.0	19	89	0	58	15	23	34	26	1.95
17120734--17120774	21	2.0	21	90	0	64	17	24	21	36	1.94
17122430--17122461	2	16.0	2	100	0	64	50	0	0	50	1.00
17122409--17122617	106	2.0	104	98	1	393	35	7	16	40	1.76
17122534--17122562	2	14.5	2	100	0	58	51	0	0	48	1.00
17132804--17132872	27	2.6	27	92	0	120	28	13	21	36	1.91
17134537--17134592	29	1.9	29	82	7	69	30	23	14	32	1.94
17137043--17137242	54	3.7	54	85	1	267	23	12	40	24	1.89
17137043--17137242	108	1.9	108	88	2	303	23	12	40	24	1.89
17144356--17144502	71	2.1	71	89	0	222	24	42	12	20	1.86
17147298--17147324	2	13.5	2	100	0	54	51	0	0	48	1.00
17147472--17147658	54	3.5	53	86	2	266	21	14	41	21	1.89
17149437--17149542	38	2.7	39	83	4	133	22	39	16	20	1.92
17152526--17152569	21	2.1	21	86	0	61	65	6	6	20	1.39
17161024--17161059	18	2.0	18	94	0	63	30	33	8	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17161231--17161401	63	2.7	63	86	3	231	24	32	18	25	1.97
17168946--17169102	63	2.5	63	77	2	154	26	29	17	26	1.98
17178860--17178926	25	2.6	27	80	9	93	14	20	11	52	1.74
17178913--17178952	16	2.6	16	88	4	55	5	15	0	80	0.88
17179003--17179049	22	2.1	22	92	0	76	10	42	10	36	1.74
17193335--17193408	21	3.5	21	79	1	76	39	18	17	24	1.92
17199299--17199323	13	1.9	13	100	0	50	48	8	0	44	1.32
17203670--17203726	20	2.8	20	89	0	78	21	28	15	35	1.94
17213057--17213097	21	2.1	19	86	9	55	60	12	0	26	1.31
17213373--17213412	2	19.5	2	94	5	71	50	2	0	47	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54