genome.fa.s7.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  11  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5208609--5208677	21	3.2	21	62	18	52	31	8	8	50	1.64
5208623--5208693	21	3.2	24	65	19	62	29	11	15	43	1.81
5208611--5208695	43	2.0	43	97	0	161	29	9	12	48	1.73
5208627--5208697	22	3.3	22	66	18	58	28	9	14	47	1.75
5217787--5217817	14	2.1	15	94	5	55	38	0	0	61	0.96
5220280--5220308	3	9.7	3	100	0	58	34	0	0	65	0.93
5221135--5221311	71	2.4	73	84	6	218	33	10	18	37	1.85
5240922--5241021	42	2.3	43	86	5	132	42	19	16	23	1.89
5254760--5254787	2	14.0	2	100	0	56	50	0	0	50	1.00
5254798--5254849	2	26.0	2	100	0	104	50	0	0	50	1.00
5255246--5255337	42	2.2	42	86	2	130	26	17	19	36	1.94
5259080--5259123	17	2.6	17	85	0	61	25	2	0	72	0.96
5264517--5264565	22	2.2	23	79	17	59	46	2	2	48	1.25
5272277--5274221	199	9.8	199	78	5	1754	34	20	12	32	1.90
5272277--5274208	397	4.9	397	80	5	1877	34	20	12	32	1.90
5274069--5274360	161	1.8	161	83	5	394	35	20	12	31	1.90
5275954--5277503	199	7.8	198	80	3	1577	33	20	13	32	1.91
5275954--5277423	400	3.7	396	80	5	1548	34	20	13	31	1.91
5279252--5280978	200	8.7	198	78	6	1422	33	20	13	32	1.91
5282929--5283344	212	2.0	211	81	4	491	37	19	11	31	1.87
5282732--5284658	200	9.6	198	77	5	1625	33	20	12	32	1.91
5282711--5284658	400	4.8	397	81	6	1910	33	20	13	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5286369--5287422	197	5.3	197	80	4	1064	33	21	12	31	1.91
5286381--5287422	397	2.6	395	80	4	1159	33	21	12	31	1.91
5293780--5293839	30	2.0	29	83	3	75	45	3	13	38	1.60
5298190--5298322	4	33.2	4	87	0	149	42	0	9	48	1.34
5298191--5298319	16	7.9	16	89	3	177	41	0	9	49	1.35
5298193--5298321	34	3.9	34	92	4	217	41	0	9	49	1.35
5299156--5299193	20	1.9	20	88	0	58	36	10	28	23	1.88
5304232--5304256	11	2.3	11	100	0	50	40	0	16	44	1.47
5310363--5310401	19	2.1	19	100	0	78	15	17	15	51	1.77
5315606--5315640	17	2.0	18	88	5	54	11	11	5	71	1.30
5317984--5318112	53	2.4	54	74	14	122	33	16	15	34	1.90
5317989--5318081	28	3.4	27	69	21	70	34	16	15	34	1.90
5320716--5320785	10	7.1	10	70	6	54	47	2	1	48	1.25
5322177--5322235	29	2.0	29	100	0	118	38	20	13	27	1.90
5329075--5329106	16	2.0	16	93	0	55	71	0	15	12	1.14
5329477--5329584	27	4.0	27	90	0	180	3	27	7	61	1.40
5336540--5336564	13	1.9	13	100	0	50	48	8	0	44	1.32
5340787--5340841	28	1.9	29	88	3	85	32	1	0	65	1.03
5340789--5340863	30	2.6	29	80	4	80	34	1	2	61	1.18
5354257--5354293	3	12.7	3	94	5	67	0	0	64	35	0.94
5371575--5371958	120	3.3	116	80	11	417	39	2	2	55	1.25
5371777--5371948	27	6.1	28	72	18	108	37	1	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5371788--5371957	69	2.4	71	76	15	190	38	1	1	59	1.13
5372642--5372813	31	5.5	31	73	11	134	28	1	23	47	1.59
5372735--5372811	32	2.4	33	80	10	88	28	2	23	45	1.66
5372938--5373034	31	3.1	31	83	0	122	30	10	22	36	1.88
5372950--5373054	31	3.4	30	78	5	86	31	8	21	38	1.84
5387955--5387982	8	3.5	8	100	0	56	0	0	10	89	0.49
5389918--5389972	26	2.1	26	82	0	65	32	16	10	40	1.83
5391321--5391635	156	2.0	156	89	1	479	22	13	39	23	1.90
5396383--5396413	16	1.9	16	100	0	62	51	0	0	48	1.00
5396381--5396443	19	3.2	19	78	17	74	57	0	0	42	0.99
5396536--5396582	22	2.2	21	76	20	53	57	2	0	40	1.11
5396898--5396963	24	3.0	21	72	20	53	51	0	0	48	1.00
5396917--5396984	15	4.3	15	68	26	50	47	1	1	50	1.19
5396922--5396984	22	2.6	22	80	12	63	44	1	1	52	1.20
5409217--5409267	12	4.2	12	72	18	52	35	15	13	35	1.87
5411072--5411100	9	3.2	9	100	0	58	79	0	0	20	0.74
5411859--5411908	6	8.3	6	88	0	73	22	28	0	50	1.49
5416310--5416344	16	2.2	16	100	0	70	42	11	5	40	1.65
5416551--5416610	21	2.8	22	78	11	63	65	3	0	31	1.09
5417705--5417887	89	2.1	89	85	0	249	26	15	36	21	1.93
5431675--5431708	11	3.1	11	86	0	50	32	23	17	26	1.97
5431968--5432017	26	1.9	26	87	0	73	34	14	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5432205--5432230	12	2.2	12	100	0	52	46	23	7	23	1.78
5433032--5433076	2	22.5	2	95	0	81	53	0	0	46	1.00
5436954--5436978	13	1.9	13	100	0	50	56	0	24	20	1.43
5437204--5437283	29	2.8	29	88	3	108	47	8	26	17	1.76
5437549--5437653	35	3.0	35	91	0	174	20	20	17	41	1.90
5437525--5437583	26	2.3	26	90	0	91	20	20	16	42	1.89
5437856--5437890	15	2.3	15	90	0	52	34	17	14	34	1.90
5437948--5438080	41	3.2	41	76	7	162	30	6	8	54	1.56
5438037--5438165	64	2.0	64	95	0	231	34	9	5	50	1.58
5439139--5439164	2	13.0	2	100	0	52	50	0	0	50	1.00
5439988--5440044	3	19.7	3	75	13	57	29	0	0	70	0.88
5439988--5440040	8	6.2	8	80	10	61	30	0	0	69	0.88
5439988--5440042	18	2.9	18	83	5	65	30	0	0	69	0.89
5443455--5443703	102	2.4	101	78	4	250	43	14	20	22	1.87
5445307--5445357	26	2.0	26	88	0	75	17	21	23	37	1.94
5445333--5445429	35	2.8	35	90	0	158	19	20	18	41	1.91
5450297--5450331	2	18.0	2	94	5	63	51	0	0	48	1.00
5478361--5478418	30	1.9	30	96	0	107	50	8	15	25	1.73
5483539--5483715	60	2.9	59	85	5	230	24	32	18	24	1.97
5484741--5484773	16	1.9	18	88	11	52	42	24	3	30	1.70
5485280--5485352	28	2.6	29	77	14	80	1	27	2	68	1.11
5485380--5485427	4	12.0	4	79	16	55	2	25	2	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5485384--5485439	28	2.0	28	89	0	85	1	28	5	64	1.26
5485479--5485547	18	3.6	18	75	17	75	2	26	0	69	1.02
5485476--5485553	23	3.6	23	68	16	76	2	25	0	70	0.99
5487452--5487481	15	2.0	15	93	0	51	56	0	20	23	1.42
5488759--5488801	21	2.1	20	86	4	59	34	4	32	27	1.78
5496590--5496723	68	1.9	71	85	8	186	44	3	20	31	1.69
5499491--5499565	35	2.1	35	97	0	141	30	14	12	42	1.82
5518087--5518130	19	2.5	17	82	10	52	59	11	2	27	1.44
5522010--5522049	20	2.0	20	85	9	55	30	10	30	30	1.90
5523376--5523469	35	2.7	35	83	0	125	47	18	15	18	1.82
5525824--5525896	22	3.0	26	68	15	82	23	9	27	39	1.85
5525901--5525934	15	2.3	15	94	0	59	32	11	14	41	1.82
5525917--5526023	48	2.2	48	83	0	133	21	12	24	42	1.87
5527552--5527599	22	2.2	22	81	7	53	16	12	20	50	1.78
5527482--5527866	118	3.3	118	84	0	511	18	11	25	43	1.84
5533476--5533532	23	2.5	23	85	0	69	33	29	15	21	1.94
5533652--5533712	23	2.7	23	76	5	61	37	29	6	26	1.81
5533791--5533942	70	2.2	70	92	0	250	34	21	11	32	1.89
5536120--5536178	26	2.6	21	72	23	55	57	6	11	23	1.58
5537745--5537790	24	1.9	24	95	0	83	23	21	19	34	1.96
5537750--5537843	24	4.0	24	72	8	77	21	28	19	30	1.97
5537727--5537877	69	2.2	69	84	0	185	21	26	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5537991--5538050	24	2.5	24	80	0	66	40	15	40	5	1.68
5538042--5538088	24	2.0	24	83	8	60	36	19	34	10	1.86
5539907--5539952	23	2.0	23	86	0	65	41	23	13	21	1.88
5547124--5547227	34	3.1	34	98	0	199	31	26	5	35	1.80
5561085--5561170	41	2.1	41	89	4	129	25	23	12	38	1.90
5561165--5561677	282	1.8	282	83	3	692	24	23	20	32	1.98
5562958--5563082	52	2.4	50	78	15	130	60	4	32	2	1.28
5563066--5563153	33	2.7	33	78	8	90	59	2	36	2	1.23
5562976--5563114	52	2.5	54	79	15	158	59	4	35	0	1.22
5563060--5563176	37	3.3	37	77	14	115	59	1	35	2	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54