genome.fa.s7.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  16  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7196391--7196778	204	1.9	204	88	4	586	35	22	12	29	1.91
7200585--7200618	3	11.3	3	93	0	59	29	0	2	67	1.05
7201333--7201375	20	2.2	19	87	4	59	74	0	0	25	0.82
7201341--7201395	14	3.8	14	81	15	67	80	0	1	18	0.81
7201345--7201392	24	2.0	25	88	12	73	79	0	2	18	0.84
7201338--7201396	15	4.0	15	82	4	75	77	0	1	20	0.85
7202708--7202763	8	6.8	8	76	11	51	78	1	1	17	0.92
7214969--7214993	13	1.9	13	100	0	50	72	0	0	28	0.86
7217655--7217691	13	2.8	13	88	12	58	29	0	0	70	0.88
7217660--7217691	6	5.2	6	92	7	55	31	0	0	68	0.90
7217864--7217950	40	2.2	39	83	6	111	60	1	8	29	1.32
7221138--7221190	2	26.5	2	100	0	106	50	0	0	49	1.00
7222262--7222404	58	2.4	59	89	4	227	48	9	8	32	1.66
7224557--7224582	3	8.7	3	100	0	52	34	0	30	34	1.58
7227387--7227451	26	2.5	26	73	14	62	23	35	24	16	1.95
7227161--7227819	333	2.0	333	88	0	969	30	22	13	33	1.92
7229930--7229964	2	17.5	2	100	0	70	51	0	0	48	1.00
7231205--7231245	2	20.5	2	100	0	82	51	0	0	48	1.00
7245600--7245633	16	2.1	16	100	0	68	47	29	11	11	1.76
7248835--7248888	22	2.5	22	81	3	74	46	7	14	31	1.73
7249041--7249080	13	2.9	14	85	11	55	55	2	0	42	1.13
7249406--7249466	31	1.9	32	83	9	81	29	19	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7267234--7267269	2	18.0	2	100	0	72	50	0	0	50	1.00
7267786--7267830	2	22.5	2	95	0	81	48	0	2	48	1.13
7268655--7268793	51	2.7	50	83	4	179	30	13	8	46	1.73
7269422--7269467	20	2.3	20	85	3	58	36	2	2	58	1.22
7276991--7277045	25	2.2	25	90	0	83	34	18	20	27	1.95
7277321--7277389	24	2.8	24	76	8	68	27	15	14	42	1.86
7277331--7277375	23	1.9	24	86	4	65	31	17	11	40	1.85
7277781--7277809	14	2.0	15	93	6	51	44	0	0	55	0.99
7277955--7278577	336	1.8	342	85	4	895	45	6	7	41	1.57
7278491--7278528	15	2.4	16	82	4	51	42	2	2	52	1.29
7282116--7282161	20	2.3	20	92	0	74	45	19	4	30	1.70
7285598--7285818	96	2.3	95	86	6	295	38	13	21	27	1.90
7309588--7309636	24	2.0	24	92	7	82	22	10	14	53	1.71
7312418--7312467	25	1.9	25	84	8	64	50	10	0	40	1.36
7320301--7320347	24	2.0	24	91	0	76	25	12	12	48	1.77
7321373--7321410	19	2.0	20	84	5	51	36	0	7	55	1.29
7347403--7347698	144	2.1	144	90	1	468	39	14	20	25	1.90
7355370--7355426	28	2.0	28	82	3	69	17	10	8	63	1.51
7360502--7360548	21	2.2	21	82	14	53	72	6	4	17	1.22
7360532--7360593	20	3.2	20	69	13	58	74	8	1	16	1.13
7369714--7369789	15	5.1	14	71	9	53	51	1	31	15	1.52
7369753--7369790	6	6.3	6	87	0	58	50	0	28	21	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7372268--7372390	46	2.7	46	78	5	122	29	17	17	36	1.92
7372402--7372434	16	2.1	16	88	5	50	30	15	12	42	1.83
7378889--7378939	26	2.0	25	88	3	75	41	17	13	27	1.87
7382438--7382823	198	2.0	195	98	1	745	51	5	5	37	1.49
7392269--7392319	16	3.3	15	81	13	50	74	5	1	17	1.11
7393196--7393230	18	1.9	18	88	11	54	37	20	0	42	1.52
7401170--7401231	30	1.9	30	87	12	88	4	20	1	72	1.12
7401807--7401856	22	2.4	20	80	6	55	36	6	0	58	1.23
7401935--7402006	35	2.0	36	83	2	92	25	6	0	68	1.15
7402587--7402670	41	2.0	41	86	4	116	40	20	3	35	1.70
7404774--7404905	65	2.0	65	86	5	187	25	31	18	23	1.98
7408012--7408095	41	2.0	41	86	0	114	42	17	1	38	1.57
7416381--7416489	47	2.3	47	93	0	182	35	10	9	44	1.70
7416438--7416603	90	1.8	91	87	3	246	38	7	7	46	1.59
7418102--7418130	3	9.7	3	100	0	58	34	31	0	34	1.58
7419314--7419404	45	2.0	45	100	0	182	37	10	38	13	1.80
7419662--7419747	36	2.4	35	84	3	100	36	3	39	20	1.70
7419678--7419753	35	2.1	36	87	2	109	27	2	43	26	1.68
7422259--7422364	55	2.0	51	87	10	151	34	10	21	33	1.88
7431224--7431269	15	3.1	15	81	12	67	28	6	32	32	1.83
7434050--7434172	64	1.9	64	89	0	192	42	14	4	38	1.67
7434272--7434402	59	2.2	61	88	10	195	45	0	4	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7434375--7434408	16	2.1	17	94	5	61	47	0	5	47	1.26
7434368--7434457	40	2.3	40	83	7	105	43	0	3	53	1.17
7434271--7434448	59	3.1	59	80	13	158	44	0	4	50	1.22
7442646--7442714	18	3.9	17	73	17	61	40	2	2	53	1.31
7443192--7443474	55	5.1	55	78	4	223	34	10	16	38	1.83
7443206--7443474	110	2.4	110	81	4	294	34	11	15	39	1.83
7443206--7443475	28	9.8	28	81	5	264	34	11	15	38	1.83
7443224--7443475	83	3.0	81	81	5	281	35	10	15	38	1.82
7448616--7448752	61	2.2	61	98	0	265	27	14	18	39	1.90
7451671--7451743	35	2.2	35	85	7	98	16	19	21	42	1.89
7451920--7451995	30	2.5	30	80	4	82	34	19	17	28	1.94
7451928--7451995	15	4.5	15	71	0	55	35	20	16	27	1.94
7452038--7452169	41	3.2	40	77	10	151	31	5	7	56	1.50
7452022--7452145	41	3.1	39	74	13	133	26	6	8	58	1.53
7452126--7452257	65	2.0	66	92	1	221	37	6	6	50	1.54
7452375--7452412	15	2.5	16	83	12	53	13	0	2	84	0.73
7453024--7453100	35	2.2	35	85	0	100	23	24	23	28	1.99
7452960--7453097	74	1.9	74	81	0	168	18	25	24	31	1.97
7454247--7454316	29	2.4	29	81	9	72	54	7	22	15	1.66
7454548--7454679	35	3.8	35	84	0	147	18	17	19	43	1.88
7454548--7454681	70	1.9	70	84	0	178	18	17	19	44	1.87
7465166--7465288	38	3.2	38	81	4	147	31	13	15	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7469725--7469773	16	2.9	16	77	16	53	55	0	2	42	1.11
7469729--7469768	19	2.1	19	90	0	62	47	0	2	50	1.14
7472513--7472571	24	2.5	23	78	8	73	28	11	40	18	1.86
7493098--7493131	18	1.9	17	94	5	59	52	32	11	2	1.53
7495070--7495152	41	2.0	41	83	0	103	44	6	12	37	1.66
7495350--7495384	17	2.0	18	88	5	54	71	0	0	28	0.86
7495565--7495598	16	2.1	17	89	10	54	64	5	0	29	1.17
7495722--7495772	18	3.1	17	76	20	54	76	0	0	23	0.79
7498635--7498728	29	3.2	29	67	8	91	26	26	29	17	1.97
7498612--7498703	29	3.1	29	65	9	78	27	20	38	14	1.91
7498612--7498737	59	2.1	59	97	0	234	29	22	33	15	1.94
7500870--7500918	26	2.0	24	88	11	73	40	2	2	55	1.23
7501511--7501537	2	13.5	2	100	0	54	48	0	0	51	1.00
7514498--7514537	18	2.2	18	90	0	62	35	2	10	52	1.48
7516577--7516671	47	2.0	47	100	0	190	29	23	24	23	1.99
7522740--7522836	32	3.0	32	81	3	97	44	23	6	25	1.77
7524181--7524259	36	2.2	36	81	4	97	39	3	20	36	1.71
7536734--7536771	17	2.2	17	95	0	67	23	28	31	15	1.96
7551807--7552030	127	1.8	124	87	6	339	24	12	8	54	1.65
7554345--7554383	12	3.4	11	82	10	51	0	12	5	82	0.83
7555332--7555391	30	2.1	29	81	6	68	31	8	21	38	1.83
7580906--7580957	11	4.8	10	81	13	59	0	15	1	82	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7580907--7580957	16	3.2	15	83	8	66	0	13	1	84	0.71
7584179--7584208	15	2.0	15	93	0	51	30	0	3	66	1.07
7591011--7591090	18	4.6	16	73	21	63	18	5	2	73	1.13
7591024--7591073	26	2.0	25	88	4	73	18	2	4	76	1.04
7597734--7597792	7	8.3	7	76	10	57	16	5	0	77	0.93
7597729--7597795	23	2.8	23	84	4	89	19	4	0	76	0.96
7597823--7597851	3	10.0	3	92	7	51	31	0	0	68	0.89
7597907--7597958	15	3.4	16	82	15	65	23	0	1	75	0.91
7597914--7597956	9	5.1	8	81	18	52	25	0	0	74	0.82
7597907--7597958	23	2.3	23	93	0	86	23	0	1	75	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54