genome.fa.s7.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  35  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14220274--14220413	49	3.0	47	79	8	144	42	22	8	25	1.82
14224160--14224201	11	4.0	11	90	9	70	26	0	0	73	0.83
14224156--14224201	7	6.7	7	81	18	53	28	0	0	71	0.86
14224789--14224878	43	2.1	43	83	4	110	13	36	28	21	1.91
14225727--14226034	37	8.1	38	84	7	378	39	20	16	23	1.91
14225726--14226034	75	4.1	76	88	5	387	39	20	16	23	1.91
14225727--14226025	116	2.6	114	89	4	453	40	20	17	22	1.91
14238200--14238253	9	5.9	9	78	4	54	18	1	0	79	0.82
14238204--14238245	12	3.0	14	86	13	52	19	0	0	80	0.70
14238206--14238263	29	2.0	28	83	3	71	20	1	1	75	0.97
14239779--14239829	21	2.4	21	81	9	59	19	1	0	78	0.85
14239785--14239836	12	4.5	11	77	15	52	21	1	0	76	0.87
14245074--14245134	33	1.9	31	86	6	86	14	9	3	72	1.24
14246248--14246290	23	1.9	23	85	4	61	0	6	16	76	0.99
14246956--14247281	118	2.8	117	81	9	401	34	18	14	33	1.90
14246950--14247279	59	5.6	59	81	5	353	33	19	13	33	1.91
14262636--14262697	21	3.0	20	79	6	63	14	3	4	77	1.06
14263506--14263602	35	2.9	33	75	6	95	10	42	16	30	1.82
14263826--14263868	23	1.9	23	85	4	61	0	6	18	74	1.04
14264287--14264327	19	2.2	19	91	4	66	12	9	0	78	0.98
14264296--14264371	36	2.1	36	83	9	93	17	3	1	77	0.99
14269383--14269722	147	2.3	147	82	1	439	25	19	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14269488--14269977	228	2.2	223	82	1	584	24	19	19	36	1.95
14269357--14269977	76	8.3	76	77	4	523	24	18	19	37	1.94
14271297--14271449	81	1.9	81	83	2	200	28	31	15	24	1.96
14273086--14273110	13	1.9	13	100	0	50	52	0	0	48	1.00
14281592--14281636	23	2.0	23	95	0	81	22	24	17	35	1.95
14281673--14282276	23	26.3	23	71	5	290	23	33	11	31	1.91
14281673--14282276	69	8.8	69	72	5	328	23	33	11	31	1.91
14281954--14282100	67	2.1	69	80	3	154	27	35	9	27	1.88
14282879--14282915	15	2.5	15	91	8	58	83	0	8	8	0.80
14284505--14284534	15	2.0	15	93	0	51	76	0	0	23	0.78
14284795--14284881	8	11.2	8	77	12	76	78	0	1	20	0.82
14284763--14284885	62	2.0	59	84	7	158	74	0	4	20	1.02
14284800--14284884	21	4.0	22	77	14	99	77	0	1	21	0.83
14284807--14284884	32	2.5	33	83	10	110	78	0	1	20	0.83
14284802--14284878	16	4.9	16	83	9	97	79	0	1	19	0.81
14284802--14284881	24	3.4	24	82	3	92	78	0	1	20	0.81
14296926--14297203	38	7.5	37	85	7	359	22	16	20	39	1.92
14296926--14297203	74	3.7	74	92	1	414	22	16	20	39	1.92
14296921--14297203	112	2.5	110	88	5	390	22	16	20	39	1.92
14297222--14297271	18	2.9	17	82	8	57	84	14	2	0	0.72
14297224--14297271	25	2.0	24	88	12	71	83	14	2	0	0.74
14299333--14299461	54	2.4	55	80	12	144	72	0	6	20	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14299436--14299475	14	2.9	14	85	11	55	75	0	0	25	0.81
14299370--14299471	24	4.1	25	73	14	77	72	0	3	23	1.01
14299430--14299476	8	5.1	10	78	21	50	72	0	0	27	0.85
14299375--14299474	16	5.9	17	71	13	64	72	0	4	24	1.02
14303465--14303499	17	2.0	18	88	5	54	65	0	0	34	0.93
14304397--14304447	19	2.7	19	84	6	59	78	1	15	3	0.99
14305269--14305297	2	14.5	2	100	0	58	51	0	0	48	1.00
14305846--14305904	18	3.4	17	77	9	66	66	0	32	1	1.02
14305950--14305991	22	1.9	22	95	0	75	73	0	21	4	1.01
14305956--14306006	15	3.2	16	83	13	61	76	0	15	7	1.00
14318642--14318695	21	2.7	19	77	16	56	24	1	1	72	1.05
14320223--14320469	37	6.6	37	90	4	363	43	19	15	21	1.88
14332624--14332674	8	6.2	8	78	13	50	19	3	0	76	0.94
14332620--14332677	18	3.3	18	83	13	68	20	3	0	75	0.94
14332620--14332707	18	5.2	16	72	20	63	22	3	2	71	1.12
14333207--14333244	19	2.0	19	85	10	51	23	0	0	76	0.79
14339861--14339936	27	2.7	27	80	11	73	26	9	2	61	1.39
14340376--14340520	69	2.1	71	85	5	197	42	7	9	40	1.66
14342252--14342281	2	15.0	2	100	0	60	50	0	0	50	1.00
14363805--14363917	34	3.3	34	86	0	127	35	26	15	23	1.94
14363829--14363924	34	2.8	34	90	0	138	37	26	13	22	1.91
14369226--14369252	4	6.8	4	100	0	54	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14370810--14370886	24	3.2	23	72	17	68	25	0	0	74	0.83
14370828--14370882	6	9.2	6	77	15	51	21	0	0	78	0.76
14370818--14370882	12	5.1	13	75	19	57	24	0	0	75	0.81
14370833--14370906	24	3.2	21	72	22	60	22	2	0	74	0.95
14370809--14370906	48	2.0	49	83	13	123	26	2	0	71	0.97
14370837--14370892	28	2.0	28	82	6	69	25	1	0	73	0.93
14370977--14371016	20	2.0	20	95	0	71	22	0	0	77	0.77
14372647--14372793	72	2.0	72	88	2	215	12	24	29	32	1.93
14372835--14372859	2	12.5	2	100	0	50	48	0	0	52	1.00
14373014--14373129	1	116.0	1	72	0	79	2	3	8	85	0.80
14373014--14373150	21	6.8	19	79	12	116	5	2	8	83	0.87
14373031--14373149	25	4.9	24	76	17	86	5	1	9	83	0.88
14373020--14373150	34	3.9	30	79	12	100	5	2	8	83	0.86
14373054--14373151	13	7.5	13	82	7	67	7	2	7	83	0.87
14373151--14373592	38	11.7	38	84	2	523	42	18	15	24	1.89
14373146--14373603	113	4.0	113	84	4	539	41	18	15	25	1.89
14385540--14385587	13	3.9	12	86	13	71	41	8	16	33	1.78
14385537--14385590	24	2.2	24	100	0	108	40	7	16	35	1.77
14385531--14385592	13	4.9	14	70	20	55	41	6	16	35	1.74
14385645--14385708	6	10.3	6	74	12	58	17	3	0	79	0.85
14385636--14385708	25	2.9	25	75	4	76	20	2	0	76	0.90
14385693--14385745	23	2.2	24	77	12	56	20	7	3	67	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14385799--14385838	20	2.0	20	95	0	71	22	0	0	77	0.77
14385926--14385979	19	2.8	19	78	13	65	24	1	1	72	1.05
14387383--14387526	72	2.0	72	90	0	225	13	27	29	29	1.94
14390592--14390678	45	1.9	45	85	0	120	27	25	27	19	1.99
14391431--14391469	18	2.0	20	90	9	64	48	0	2	48	1.15
14394848--14394918	22	3.3	22	70	4	72	35	22	15	26	1.94
14401600--14401652	2	26.5	2	96	0	97	47	1	0	50	1.12
14405683--14405920	111	2.1	112	80	6	252	43	17	11	27	1.83
14410881--14410926	19	2.4	20	82	10	60	54	0	2	43	1.12
14414511--14414643	60	2.2	61	82	5	162	39	14	11	34	1.81
14417357--14417414	24	2.3	26	79	5	66	55	10	5	29	1.55
14418698--14418751	28	1.9	28	88	0	81	59	11	3	25	1.48
14419035--14419106	23	3.0	23	75	16	67	51	2	0	45	1.15
14419069--14419103	18	1.9	18	94	0	61	54	0	0	45	0.99
14422575--14422617	21	2.0	21	86	0	59	62	4	0	32	1.15
14426693--14426754	25	2.5	25	100	0	124	38	16	11	33	1.84
14427352--14427472	63	1.9	64	94	3	217	47	10	8	33	1.68
14428433--14428469	19	1.9	19	88	0	56	48	2	18	29	1.62
14438455--14438512	23	2.8	22	80	17	70	55	0	0	44	0.99
14438461--14438496	18	1.9	19	94	5	65	52	0	0	47	1.00
14446258--14446285	6	4.7	6	100	0	56	0	0	14	85	0.59
14449015--14449058	21	2.1	21	87	8	63	43	15	4	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14449104--14449150	22	2.1	23	88	4	69	61	10	4	23	1.46
14449136--14449191	21	2.6	21	85	2	67	50	21	3	25	1.65
14449286--14449351	21	3.1	21	86	0	96	46	21	7	24	1.76
14449846--14449887	21	2.0	21	90	9	68	30	9	21	38	1.85
14449800--14449952	50	3.1	51	81	6	163	37	7	16	38	1.76
14451926--14451971	22	2.1	22	84	8	58	34	6	10	47	1.64
14458087--14458124	3	12.7	3	88	0	58	36	0	31	31	1.58
14477162--14477262	2	50.0	2	83	7	98	48	6	1	41	1.41
14477136--14477260	63	2.0	62	98	0	232	48	10	3	37	1.54
14480433--14480500	21	3.2	21	78	2	73	42	14	14	27	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54