genome.fa.s7.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  29  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12117528--12117580	28	1.9	27	84	3	70	30	24	32	13	1.93
12119066--12119108	11	3.9	11	78	0	50	74	2	2	20	1.04
12131132--12131813	38	17.9	38	84	5	808	23	15	19	41	1.89
12131814--12131856	12	3.7	11	78	9	50	86	11	0	2	0.67
12131813--12131856	22	2.0	22	86	8	63	84	11	0	4	0.77
12131814--12131857	16	2.6	17	83	16	56	84	13	0	2	0.73
12140242--12140273	15	2.1	16	94	5	57	46	9	6	37	1.61
12141095--12141164	16	4.2	16	74	18	63	51	2	1	44	1.25
12150156--12150181	10	2.6	10	100	0	52	92	0	0	7	0.39
12152034--12152058	2	12.5	2	100	0	50	48	0	0	52	1.00
12152826--12152865	3	13.0	3	84	5	53	65	0	0	35	0.93
12166302--12166350	19	2.4	19	86	10	62	32	2	2	63	1.17
12171465--12171489	6	4.2	6	100	0	50	84	0	0	16	0.63
12172134--12172236	54	1.9	54	87	0	152	24	28	12	34	1.92
12172575--12172652	31	2.5	31	93	0	129	24	15	20	39	1.91
12176520--12176593	31	2.4	31	77	8	78	22	14	33	28	1.94
12176448--12176914	118	4.0	118	83	3	550	22	18	29	28	1.98
12185665--12185783	37	3.2	36	85	7	168	25	36	10	27	1.89
12189193--12189260	34	2.0	35	85	2	93	30	13	26	29	1.94
12189587--12189922	31	10.5	31	82	7	361	38	17	17	26	1.91
12189767--12189884	41	3.2	38	74	21	106	40	14	16	27	1.88
12189844--12189918	30	2.5	31	84	8	100	38	20	16	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12190605--12190908	47	6.5	48	81	5	228	24	27	20	27	1.99
12190588--12190911	94	3.4	94	83	0	371	24	27	20	27	1.99
12190588--12190901	141	2.2	141	82	0	358	24	27	20	27	1.99
12190856--12191076	58	3.8	57	76	4	192	26	29	14	29	1.95
12197156--12197207	26	2.0	26	92	0	86	19	13	7	59	1.58
12197149--12197214	26	2.8	23	75	18	64	21	13	6	59	1.56
12197792--12197883	23	4.0	22	70	6	67	28	10	30	30	1.91
12197908--12197961	23	2.3	23	90	0	81	18	20	29	31	1.96
12199906--12199959	23	2.3	23	83	0	63	20	16	31	31	1.95
12205421--12205837	111	3.7	111	87	3	575	45	26	11	16	1.81
12207089--12207350	48	5.8	48	76	13	295	36	27	11	24	1.90
12207137--12207297	40	3.8	40	79	12	196	34	27	11	26	1.91
12207088--12207338	88	2.9	88	95	0	448	36	26	11	25	1.90
12215707--12215758	28	1.9	29	85	14	76	73	7	13	5	1.24
12215948--12216009	20	3.2	20	76	17	58	30	0	6	62	1.20
12216413--12216457	19	2.3	20	85	14	60	6	26	2	64	1.30
12217365--12217525	55	2.9	55	89	1	234	20	14	36	28	1.92
12219377--12219539	42	3.9	42	84	0	200	20	22	33	22	1.97
12223564--12223628	11	6.0	10	74	15	58	64	1	0	33	1.03
12223579--12223628	15	3.1	16	77	13	50	66	0	0	34	0.92
12223943--12223977	17	2.0	18	88	5	54	71	2	0	25	1.00
12223929--12223976	8	5.9	8	78	4	51	70	4	0	25	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12231919--12232091	77	2.3	76	88	3	260	39	8	13	38	1.75
12234670--12234827	63	2.5	63	96	0	289	24	34	18	22	1.96
12239000--12239034	10	3.4	10	92	7	61	85	0	11	2	0.69
12250107--12250135	12	2.4	12	100	0	58	68	13	0	17	1.20
12250100--12250146	18	2.6	18	83	10	60	74	8	0	17	1.05
12264921--12264968	15	3.2	15	75	0	60	25	10	10	54	1.66
12267709--12267773	21	3.1	21	82	4	87	24	7	21	46	1.77
12267993--12268035	21	2.0	21	86	0	59	34	6	18	39	1.78
12268000--12268060	21	3.0	21	82	2	70	29	3	16	50	1.61
12268188--12268269	20	4.1	20	84	6	103	37	18	12	31	1.87
12268650--12268718	36	1.9	36	87	0	102	28	10	28	31	1.90
12273264--12273366	38	2.6	40	86	3	138	19	16	42	21	1.89
12276540--12276588	23	2.2	22	85	10	64	0	26	0	73	0.83
12276539--12276587	17	2.8	18	79	14	50	0	24	0	75	0.80
12277721--12277778	30	1.9	30	86	6	82	48	8	8	34	1.65
12280285--12280324	20	2.0	21	85	5	55	35	12	20	32	1.90
12280471--12280539	33	2.1	33	97	0	129	37	4	10	47	1.57
12285933--12285984	22	2.4	22	86	0	68	23	26	21	28	1.99
12286273--12286396	42	3.0	42	81	7	153	22	28	20	29	1.98
12288324--12288355	16	1.9	16	93	6	55	59	0	0	40	0.97
12289821--12289999	87	2.1	87	91	2	288	38	20	8	32	1.83
12290690--12290750	30	2.0	30	96	0	113	34	3	14	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12290689--12290737	12	3.1	17	68	31	54	36	4	14	44	1.64
12292198--12292235	19	2.0	19	94	0	67	28	0	28	42	1.56
12304657--12304747	43	2.1	43	93	0	155	24	34	18	23	1.96
12306092--12306121	15	1.9	16	93	6	53	36	16	13	33	1.88
12307186--12307244	21	2.8	22	82	14	72	1	30	0	67	1.00
12307185--12307245	14	4.3	14	79	14	63	1	29	0	68	0.99
12310390--12310414	13	1.9	13	100	0	50	48	8	0	44	1.32
12312241--12312314	29	2.5	30	80	10	89	25	9	16	48	1.76
12334222--12334263	2	21.0	2	100	0	84	50	0	0	50	1.00
12334322--12334486	63	2.6	63	79	2	197	24	31	19	24	1.98
12339451--12339539	44	2.1	43	89	6	137	25	34	15	23	1.95
12340163--12340213	20	2.6	19	81	6	57	50	7	25	15	1.71
12344367--12344579	35	6.1	35	88	0	309	25	38	9	26	1.86
12345276--12345319	22	2.0	22	86	8	63	31	20	6	40	1.79
12350670--12350793	43	2.9	44	79	4	146	25	17	36	20	1.95
12351138--12351292	60	2.6	59	80	5	168	25	20	18	36	1.95
12353340--12353378	18	2.2	18	100	0	78	35	5	17	41	1.72
12355325--12355373	22	2.2	22	88	0	71	32	12	22	32	1.91
12359581--12359628	21	2.3	21	82	7	62	60	6	18	14	1.55
12359582--12359622	21	1.9	21	90	5	64	58	7	17	17	1.60
12370827--12370861	18	1.9	18	94	0	61	0	17	28	54	1.43
12380383--12380429	2	23.5	2	91	0	67	46	0	4	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12391301--12391363	2	32.0	2	87	9	94	50	0	1	46	1.11
12392010--12392037	2	14.0	2	100	0	56	50	0	50	0	1.00
12394276--12394305	3	10.0	3	100	0	60	0	33	0	66	0.92
12394308--12394341	17	2.0	17	100	0	68	58	11	29	0	1.33
12396944--12396969	2	13.0	2	100	0	52	50	0	0	50	1.00
12397698--12397727	2	15.0	2	100	0	60	50	0	0	50	1.00
12406850--12406955	2	53.0	2	72	7	72	43	5	3	47	1.45
12407585--12407627	22	2.0	21	81	4	50	30	23	27	18	1.98
12410390--12410495	43	2.5	43	82	3	124	25	19	34	19	1.96
12410510--12410569	23	2.6	23	91	0	93	23	3	41	31	1.71
12412044--12412068	13	1.9	13	100	0	50	48	8	0	44	1.32
12414735--12414775	21	2.0	21	95	0	73	29	12	29	29	1.93
12415908--12415945	19	2.0	19	100	0	76	26	0	31	42	1.56
12417179--12417203	13	1.9	13	100	0	50	44	0	8	48	1.32
12423920--12423950	16	1.9	16	93	0	53	38	9	9	41	1.71
12427386--12427436	14	3.7	14	86	2	68	33	1	21	43	1.64
12440951--12440975	13	1.9	13	100	0	50	48	12	0	40	1.40
12448426--12448547	37	3.3	36	89	4	190	27	10	39	22	1.87
12448795--12448870	30	2.5	30	91	0	125	19	19	28	31	1.97
12456466--12456634	63	2.7	63	95	0	293	29	14	33	23	1.94
12464511--12464564	28	1.9	29	88	7	85	27	22	18	31	1.97
12465784--12465871	42	2.1	42	93	0	149	21	23	32	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12465899--12465967	29	2.4	29	92	2	113	26	2	39	31	1.71
12465903--12465952	23	2.3	20	80	10	55	26	2	42	30	1.66
12470389--12470415	12	2.2	12	100	0	54	22	7	14	55	1.64
12478357--12478455	36	2.8	36	81	3	110	24	38	18	19	1.93
12478357--12478468	36	3.1	36	79	5	102	25	36	16	20	1.94
12482397--12482491	49	1.9	49	93	0	163	37	23	13	25	1.91
12482444--12482581	42	3.3	41	82	5	168	36	24	13	26	1.92
12483728--12483758	16	1.9	16	93	0	53	77	3	0	19	0.90
12488012--12488290	80	3.5	80	84	1	350	34	22	8	34	1.86
12489584--12489615	16	2.0	16	93	0	55	65	18	3	12	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54