genome.fa.s7.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  32  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13101095--13101207	55	2.1	55	93	0	190	37	25	9	27	1.87
13102593--13103043	226	2.0	227	86	0	625	31	11	20	37	1.88
13103075--13103223	80	1.9	79	85	1	208	32	8	22	36	1.83
13103100--13103251	80	1.9	80	80	0	178	34	7	19	38	1.81
13104998--13105206	42	5.0	42	83	4	224	24	32	19	23	1.98
13114584--13114696	57	2.0	56	94	3	201	27	10	25	35	1.89
13114600--13114697	31	3.3	31	60	18	73	28	9	23	37	1.85
13114862--13114984	43	2.9	43	87	4	169	23	16	37	22	1.93
13114970--13115034	20	3.2	20	86	4	85	26	3	41	29	1.71
13116218--13116362	43	3.4	43	89	1	211	40	20	22	16	1.91
13116285--13116352	21	3.2	21	61	19	50	42	23	22	11	1.86
13116242--13116452	43	4.9	43	84	1	226	41	18	20	18	1.90
13119439--13119480	19	2.3	18	84	8	50	28	0	4	66	1.12
13138524--13138573	23	2.2	23	100	0	100	30	16	18	36	1.92
13141612--13141652	20	2.0	20	90	0	64	43	0	7	48	1.30
13141682--13141720	2	20.0	2	89	5	62	53	0	0	46	1.00
13141746--13141812	18	3.8	18	77	9	59	43	4	8	43	1.56
13141997--13142057	26	2.4	26	81	8	72	44	6	6	42	1.56
13144935--13145012	34	2.3	34	79	0	84	5	48	12	33	1.63
13148331--13148380	26	1.9	26	95	0	91	10	16	14	60	1.59
13154251--13154321	36	2.0	35	91	2	115	35	8	7	49	1.60
13154500--13154561	31	2.0	31	96	0	115	61	4	3	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13155997--13156033	11	3.3	11	85	7	56	40	0	0	59	0.97
13156512--13156629	59	2.0	59	89	0	182	28	13	10	47	1.75
13157005--13157084	35	2.3	34	82	2	97	40	27	12	20	1.88
13160649--13160707	28	2.1	28	87	0	82	22	16	6	54	1.66
13164808--13164871	25	2.6	25	77	5	67	32	12	9	45	1.74
13168928--13168957	9	3.3	9	90	0	51	86	0	3	10	0.67
13169642--13169680	21	1.9	21	89	5	62	35	10	23	30	1.88
13173434--13173556	63	2.0	63	95	0	219	23	14	34	27	1.94
13173740--13173809	37	1.9	37	88	5	108	22	32	32	11	1.90
13174133--13174402	130	2.1	131	92	0	452	28	12	42	16	1.85
13181854--13181910	27	2.2	26	90	6	96	47	19	15	17	1.83
13181860--13181911	27	1.9	27	100	0	104	48	19	13	19	1.81
13183812--13183867	29	1.9	29	82	7	69	44	1	1	51	1.22
13183811--13183873	29	2.2	28	78	13	65	44	3	1	50	1.27
13185079--13185119	19	2.2	19	86	0	55	53	0	0	46	1.00
13191214--13191252	15	2.6	15	84	12	53	2	20	2	74	1.06
13192382--13192553	60	2.8	61	83	2	213	34	22	18	24	1.96
13192510--13192553	21	2.2	20	91	4	70	27	22	18	31	1.97
13192876--13192978	38	2.6	39	85	8	131	22	39	16	21	1.92
13195263--13195287	12	2.1	12	100	0	50	44	8	8	40	1.63
13195280--13195306	2	13.5	2	100	0	54	48	0	0	51	1.00
13198758--13198826	36	1.9	35	85	2	93	43	5	11	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13203984--13204020	16	2.2	17	86	13	51	62	18	0	18	1.34
13206619--13206663	21	2.3	18	85	11	54	51	2	2	44	1.26
13207982--13208019	19	2.0	19	100	0	76	42	31	0	26	1.56
13210748--13210919	86	2.0	85	98	1	335	31	15	10	42	1.80
13211008--13211041	2	17.0	2	100	0	68	50	0	0	50	1.00
13215005--13215065	25	2.3	27	83	11	81	11	24	13	50	1.74
13215056--13215086	16	1.9	16	93	0	53	0	16	0	83	0.64
13215243--13215355	58	1.9	58	85	0	154	29	23	13	34	1.92
13215397--13215442	23	2.0	23	86	0	65	32	26	4	36	1.76
13215540--13215581	16	2.7	16	79	17	52	4	23	0	71	1.05
13215818--13215870	2	26.5	2	100	0	106	49	0	0	50	1.00
13221257--13221283	2	13.5	2	100	0	54	51	0	0	48	1.00
13234987--13235511	286	1.8	285	92	0	881	34	16	15	32	1.90
13239423--13239460	19	2.0	20	89	5	60	28	2	0	68	1.03
13240000--13240047	22	2.3	20	82	7	60	41	0	2	56	1.11
13247862--13248009	74	2.0	75	90	1	235	41	11	10	37	1.75
13247959--13248024	32	2.1	32	83	11	82	45	12	6	36	1.66
13254704--13254850	74	2.0	74	91	0	240	23	21	14	39	1.91
13280904--13280940	18	2.1	18	90	5	58	13	2	2	81	0.92
13281260--13281297	18	2.1	19	85	14	53	55	26	7	10	1.61
13282509--13282594	42	2.0	42	100	0	172	39	22	6	31	1.80
13288254--13288286	16	2.1	16	88	5	50	12	3	18	66	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13303613--13303658	20	2.3	20	92	0	74	45	19	4	30	1.70
13311823--13311895	36	2.0	36	86	0	101	30	13	15	41	1.85
13313150--13313202	22	2.4	22	81	12	63	33	16	3	45	1.66
13319730--13319811	33	2.3	36	85	8	107	8	45	12	34	1.72
13319827--13319927	35	3.0	34	74	8	100	6	45	14	32	1.72
13321549--13321580	16	2.0	16	93	0	55	18	15	0	65	1.27
13333384--13333427	2	22.0	2	100	0	88	50	0	50	0	1.00
13339568--13339621	21	2.7	21	78	13	60	62	9	0	27	1.25
13339568--13339625	20	2.8	21	78	17	59	60	10	0	29	1.30
13350996--13351045	25	2.0	25	88	3	75	20	20	26	34	1.96
13351488--13351593	39	2.9	35	84	10	140	33	22	9	33	1.86
13351516--13351594	39	2.0	39	100	0	158	36	22	7	32	1.83
13352253--13352277	7	3.6	7	100	0	50	40	44	0	16	1.47
13364543--13364803	36	7.2	36	68	16	164	27	34	14	22	1.94
13364582--13364812	39	6.3	38	68	16	132	27	33	15	23	1.94
13364656--13364849	34	5.4	34	64	18	88	27	35	13	22	1.93
13364614--13364858	73	3.4	73	88	0	373	26	34	15	23	1.94
13369268--13369355	29	3.0	29	96	0	158	20	18	13	47	1.82
13373260--13373285	10	2.6	10	100	0	52	23	0	0	76	0.78
13374788--13374827	6	6.7	6	91	0	62	2	20	0	77	0.88
13375253--13375298	21	2.2	21	84	0	56	36	8	4	50	1.53
13376104--13376169	19	3.4	19	77	4	69	19	24	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13376122--13376189	20	3.5	20	71	4	66	20	23	13	42	1.87
13376104--13376189	39	2.2	39	91	0	136	20	23	13	41	1.88
13376175--13376204	15	2.0	15	93	0	51	26	23	6	43	1.78
13377869--13377966	39	2.6	39	79	6	105	25	22	10	41	1.85
13377936--13377965	15	2.0	15	93	0	51	26	23	6	43	1.78
13380295--13380354	23	2.6	23	83	0	75	28	3	36	31	1.74
13389356--13389395	20	2.0	20	85	4	55	55	0	0	45	0.99
13390153--13390221	2	34.5	2	89	5	104	47	0	2	47	1.17
13393011--13393189	60	3.0	61	80	9	199	24	32	18	24	1.97
13393798--13394196	68	5.8	68	85	6	491	1	36	4	58	1.25
13393994--13394033	21	1.9	21	90	10	64	0	52	5	42	1.23
13393986--13394139	16	9.1	16	65	28	54	0	40	3	56	1.15
13394164--13394211	18	2.6	19	83	6	64	0	29	0	70	0.87
13393797--13394268	136	3.5	135	80	11	450	1	36	3	58	1.25
13394230--13394285	24	2.3	24	87	9	78	0	30	0	69	0.89
13394250--13394291	10	4.2	10	85	8	50	0	23	0	76	0.79
13394354--13394394	12	3.3	13	83	10	59	0	26	2	70	0.99
13397870--13397908	18	2.0	20	90	9	64	74	2	2	20	1.06
13398362--13398419	6	9.5	6	82	16	66	18	1	1	77	0.94
13398372--13398419	23	2.1	22	88	3	69	18	2	0	79	0.84
13398378--13398413	17	2.2	16	95	5	63	16	2	0	80	0.83
13398359--13398419	29	2.1	29	85	11	81	18	1	1	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13399266--13399378	36	3.2	36	75	3	104	31	20	14	33	1.92
13405434--13405548	36	3.2	36	83	1	160	32	21	17	28	1.96
13408345--13408389	2	22.5	2	100	0	90	51	0	0	48	1.00
13408716--13408837	34	3.6	33	80	7	129	27	10	31	31	1.90
13408723--13408837	35	3.4	34	79	5	108	28	10	30	30	1.90
13409073--13409129	25	2.3	24	82	8	69	42	14	29	14	1.84
13412249--13412329	23	3.5	23	82	0	99	27	9	28	34	1.89
13416192--13416252	26	2.3	26	83	5	70	27	11	8	52	1.66
13416575--13416674	23	4.3	23	88	0	146	28	11	27	34	1.90
13416588--13416684	46	2.1	46	88	0	140	26	11	27	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54