genome.fa.s7.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  43  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17213484--17213515	2	16.0	2	100	0	64	50	0	0	50	1.00
17213977--17214009	15	2.3	15	89	5	50	57	6	12	24	1.57
17214985--17215030	19	2.4	20	82	10	60	54	0	2	43	1.12
17215432--17215469	20	1.9	20	100	0	76	28	5	21	44	1.73
17215523--17215580	28	2.1	27	81	12	73	31	22	22	24	1.99
17216715--17216739	13	1.9	13	100	0	50	44	0	8	48	1.32
17218174--17218255	43	1.9	43	84	0	110	23	34	18	24	1.96
17223000--17223045	15	3.1	15	87	0	56	32	2	2	63	1.19
17224840--17224864	13	1.9	13	100	0	50	48	8	0	44	1.32
17225998--17226055	28	2.1	28	84	9	75	24	20	22	32	1.98
17226108--17226145	20	1.9	20	94	0	67	47	18	5	28	1.70
17230763--17230821	21	2.8	21	84	0	73	30	27	23	18	1.98
17245075--17245109	13	2.7	13	90	0	52	45	0	5	48	1.26
17249492--17249519	2	14.0	2	100	0	56	50	0	0	50	1.00
17249557--17249586	2	15.0	2	100	0	60	50	0	0	50	1.00
17251543--17251603	19	3.2	20	80	17	76	39	8	36	16	1.78
17252401--17252580	80	2.2	80	90	1	272	32	24	9	33	1.87
17253010--17253035	13	2.0	13	100	0	52	46	7	38	7	1.61
17254397--17254450	25	2.2	25	83	3	65	14	31	12	40	1.84
17254400--17254456	25	2.2	25	76	14	62	15	24	12	47	1.80
17254940--17254980	20	2.0	20	90	0	64	0	26	7	65	1.18
17258233--17258371	60	2.3	60	83	0	170	34	21	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17258725--17258833	41	2.6	41	81	8	112	21	33	19	25	1.96
17262559--17262596	19	2.0	19	100	0	76	42	31	0	26	1.56
17265377--17265428	28	1.9	27	81	14	63	28	19	19	32	1.96
17266908--17266943	18	2.1	17	89	5	54	0	25	0	75	0.81
17266903--17266946	23	1.9	23	90	0	70	0	25	0	75	0.81
17267104--17267194	34	2.6	34	85	1	119	34	29	9	26	1.89
17268675--17268705	16	1.9	16	93	0	53	67	19	0	12	1.22
17275726--17275774	25	2.0	25	91	0	80	26	20	28	24	1.99
17278374--17278410	10	3.5	11	82	10	51	24	0	21	54	1.45
17282881--17282963	34	2.4	34	86	7	116	38	28	12	20	1.88
17288064--17288102	21	1.9	21	89	5	62	15	12	12	58	1.62
17288283--17288319	10	3.5	11	82	10	51	24	0	21	54	1.45
17294415--17294463	17	2.9	17	78	0	62	12	6	28	53	1.62
17298586--17298624	10	4.0	10	83	16	55	69	0	0	30	0.89
17298592--17298630	18	2.0	20	90	9	64	74	0	0	25	0.82
17308411--17308435	13	1.9	13	100	0	50	48	8	0	44	1.32
17310693--17310755	20	3.2	20	90	2	101	30	41	3	25	1.71
17310754--17310872	43	2.8	43	89	2	168	19	37	21	21	1.94
17321136--17321179	22	2.0	22	82	8	54	70	2	2	25	1.10
17324167--17324212	20	2.3	20	80	0	56	8	19	6	65	1.43
17329510--17329568	24	2.5	24	97	0	109	33	16	22	27	1.95
17355385--17355415	2	15.5	2	93	0	53	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17358320--17358531	38	5.7	38	69	15	138	21	14	40	24	1.90
17358249--17358493	109	2.2	109	94	0	418	21	13	41	24	1.89
17363814--17363847	17	2.0	17	88	0	50	52	0	0	47	1.00
17376638--17376801	28	5.9	28	71	4	118	31	14	14	40	1.85
17376737--17376813	28	2.8	28	75	16	79	31	11	16	40	1.85
17380706--17381003	47	6.4	47	81	0	373	25	17	34	22	1.96
17380679--17381003	94	3.5	94	84	3	422	25	18	33	22	1.96
17380706--17381003	140	2.1	141	83	3	377	25	17	34	22	1.96
17380921--17381002	24	3.5	24	66	21	64	28	20	32	18	1.96
17380993--17381111	53	2.3	53	88	1	168	24	19	28	27	1.98
17381581--17381670	31	2.9	31	88	3	128	25	12	22	40	1.88
17381591--17381880	31	9.1	31	80	6	278	25	16	19	38	1.92
17381615--17381881	100	2.7	99	81	6	271	25	17	19	37	1.93
17381646--17381775	69	1.9	68	85	0	170	26	16	16	39	1.90
17381584--17381837	131	1.9	130	84	3	323	24	15	20	38	1.91
17383511--17384006	156	3.2	154	81	2	537	35	17	18	28	1.94
17384255--17384614	31	11.6	31	75	4	314	21	19	18	40	1.91
17386798--17386948	31	4.9	31	89	4	198	21	18	21	38	1.93
17386795--17386940	62	2.4	62	90	0	220	22	18	21	36	1.95
17390422--17390503	31	2.6	31	88	3	112	32	20	18	28	1.96
17390530--17390715	55	3.4	54	79	4	185	42	31	11	13	1.81
17395478--17395643	42	4.0	42	93	0	269	22	21	32	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17395878--17395939	26	2.4	26	94	0	106	24	3	40	32	1.71
17404564--17404607	21	2.1	21	95	0	79	31	25	20	22	1.98
17404687--17404883	82	2.4	85	79	10	201	43	13	11	32	1.79
17404825--17404890	29	2.2	29	86	2	87	39	9	15	36	1.79
17404828--17404907	29	2.7	30	80	7	83	45	8	12	33	1.73
17405548--17405582	10	3.5	10	92	7	54	25	11	0	62	1.28
17406055--17406090	15	2.3	15	90	4	54	25	2	5	66	1.27
17409832--17409873	20	2.2	19	84	16	52	30	2	26	40	1.69
17409961--17409985	2	12.5	2	100	0	50	52	48	0	0	1.00
17417641--17417715	2	39.0	2	76	12	59	50	1	2	44	1.24
17417640--17417733	49	1.9	48	100	0	179	51	1	4	42	1.28
17418286--17418346	22	2.8	22	82	0	77	40	22	14	21	1.90
17423637--17424026	172	2.3	170	80	6	455	35	11	13	40	1.80
17430351--17430398	2	24.0	2	100	0	96	50	0	0	50	1.00
17434848--17434880	11	3.0	11	86	13	50	0	24	0	75	0.80
17452823--17452865	20	2.2	20	83	8	52	25	4	9	60	1.47
17456758--17456782	13	1.9	13	100	0	50	48	8	0	44	1.32
17458439--17458526	44	2.0	44	88	0	131	39	18	6	35	1.77
17459655--17459698	21	2.1	21	86	0	61	29	22	18	29	1.97
17459754--17459847	26	3.2	31	73	21	94	39	11	15	32	1.84
17459754--17459855	31	3.5	31	73	18	101	37	12	16	33	1.87
17459784--17459952	81	2.1	81	82	4	207	40	9	15	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17461580--17461639	30	2.0	30	96	0	111	18	13	18	50	1.78
17462451--17462549	49	2.0	49	90	0	153	64	4	17	14	1.43
17462686--17462725	20	2.0	21	90	5	64	82	0	10	7	0.84
17462762--17462792	15	2.1	15	100	0	62	61	12	6	19	1.53
17464143--17464197	27	2.0	27	82	6	67	45	20	3	30	1.68
17465251--17465294	2	21.5	2	95	4	79	47	0	2	50	1.13
17465515--17465555	22	2.0	22	85	9	59	39	7	7	46	1.60
17466423--17466457	2	17.5	2	100	0	70	48	0	0	51	1.00
17470378--17470410	17	1.9	17	100	0	66	21	36	12	30	1.90
17473254--17473379	63	2.0	63	100	0	252	22	19	12	46	1.83
17479817--17479860	23	1.9	23	90	0	70	27	13	34	25	1.93
17479888--17480073	23	8.1	23	75	10	130	29	14	32	23	1.94
17479906--17480079	44	3.8	46	77	9	151	29	14	32	23	1.94
17480081--17480231	47	3.2	47	85	0	223	26	16	32	24	1.96
17483704--17483872	31	5.5	31	91	0	266	28	14	20	36	1.91
17490747--17491192	31	14.4	31	78	2	385	26	31	15	27	1.95
17491889--17491973	24	3.5	24	77	0	89	30	28	15	25	1.96
17496776--17497082	151	2.0	151	91	5	501	51	10	3	34	1.53
17503064--17503088	2	12.5	2	100	0	50	48	0	0	52	1.00
17503990--17504030	21	2.0	21	90	0	64	0	31	0	68	0.90
17509068--17509243	23	7.7	23	72	7	117	36	19	11	32	1.87
17509067--17509197	46	2.9	45	77	8	140	36	18	10	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17509942--17510030	31	2.9	31	78	6	99	25	28	17	28	1.98
17510680--17510719	19	2.0	21	90	9	66	25	12	10	52	1.70
17511507--17511532	2	13.0	2	100	0	52	50	0	0	50	1.00
17513541--17513570	9	3.3	9	100	0	60	50	0	0	50	1.00
17514135--17514189	27	2.0	27	82	0	65	41	10	14	32	1.81
17514258--17514347	27	3.2	28	81	6	103	43	8	10	37	1.70
17514499--17514556	29	2.0	29	86	0	80	44	10	5	39	1.61
17514525--17514591	26	2.5	27	80	4	73	43	13	8	34	1.75
17522664--17522831	36	4.7	35	76	16	132	27	35	14	21	1.93
17524789--17524818	15	2.0	15	100	0	60	46	20	0	33	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54