genome.fa.s7.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  10  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4822509--4822655	52	2.9	52	78	8	158	38	10	14	36	1.81
4822531--4822731	52	3.9	53	78	4	180	39	11	14	34	1.83
4822580--4822682	53	2.0	52	84	1	134	40	11	13	33	1.81
4822642--4822750	52	2.1	52	84	1	137	39	9	15	35	1.79
4822600--4822750	53	2.9	53	79	1	178	37	10	15	36	1.82
4823026--4823079	24	2.2	25	86	6	83	42	20	9	27	1.82
4835608--4835904	144	2.1	144	88	2	445	24	23	15	37	1.93
4835678--4835901	72	3.1	71	64	14	161	24	24	16	35	1.94
4845246--4845416	31	5.5	31	87	1	193	39	19	16	24	1.92
4845899--4846053	47	3.3	47	87	8	237	27	25	18	28	1.98
4846043--4846361	47	6.8	47	81	1	327	22	30	18	28	1.97
4846051--4846361	94	3.3	94	82	1	365	22	30	17	28	1.97
4847519--4847566	24	2.0	24	100	0	96	20	16	25	37	1.93
4855290--4855567	144	1.9	144	85	4	382	24	24	14	36	1.93
4855434--4855830	198	2.0	198	88	1	582	25	23	16	33	1.96
4859666--4859713	24	1.9	24	87	8	69	27	4	12	56	1.54
4865188--4865303	9	12.3	9	66	24	53	4	20	0	75	0.98
4865217--4865295	20	3.7	20	71	25	63	2	20	0	77	0.89
4865217--4865304	25	3.5	25	77	20	71	2	19	0	78	0.86
4865143--4865301	28	5.4	28	69	24	80	4	20	1	73	1.07
4865225--4865304	9	8.9	9	73	5	63	2	18	0	78	0.86
4865879--4865953	13	5.8	13	77	12	55	1	20	1	77	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4865877--4865954	26	3.0	26	75	17	81	1	19	1	78	0.90
4865876--4865961	40	2.1	41	85	10	115	1	17	2	79	0.91
4865876--4865961	20	4.3	19	82	11	84	1	17	2	79	0.91
4871450--4871491	18	2.3	18	91	4	66	19	4	16	59	1.54
4871540--4871592	21	2.5	22	78	6	63	20	11	24	43	1.85
4871794--4871906	51	2.2	50	88	1	172	40	20	7	30	1.81
4871794--4871925	51	2.6	50	84	5	142	38	18	9	33	1.83
4880235--4880275	20	2.0	20	86	9	57	60	2	2	34	1.23
4881023--4881057	17	2.0	18	94	5	63	17	22	22	37	1.94
4898291--4898322	16	2.0	16	93	0	55	40	0	0	59	0.97
4898972--4899021	25	2.0	25	96	0	91	18	32	6	44	1.74
4898975--4899030	25	2.2	25	87	6	78	19	26	7	46	1.76
4899035--4899196	55	2.9	55	88	3	254	27	16	19	36	1.93
4899356--4899494	57	2.4	57	90	0	224	47	7	6	38	1.59
4916069--4916109	20	2.0	20	86	9	57	58	2	2	36	1.24
4921506--4921534	13	2.2	13	100	0	58	44	24	10	20	1.82
4926019--4926059	3	13.7	3	86	0	55	58	2	36	2	1.24
4927446--4927497	26	2.0	25	82	14	61	32	1	3	61	1.25
4930275--4930301	3	9.0	3	100	0	54	0	33	0	66	0.92
4931000--4931393	152	2.6	152	93	2	654	25	19	13	42	1.87
4935091--4935135	6	7.3	6	80	5	54	48	6	11	33	1.65
4935091--4935135	12	3.7	12	87	3	63	48	6	11	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4939744--4939895	27	5.6	27	72	12	89	18	28	21	30	1.97
4940635--4940759	2	62.0	2	95	1	133	44	0	0	44	1.04
4943852--4943962	33	3.4	33	77	5	134	20	10	36	32	1.87
4954963--4955046	42	2.0	42	92	0	141	39	16	17	26	1.91
4958449--4958475	2	13.5	2	100	0	54	48	0	0	51	1.00
4959992--4960027	18	1.9	19	88	5	56	47	8	8	36	1.64
4963106--4963167	33	1.9	33	90	6	101	61	19	3	16	1.48
4967137--4967191	25	2.2	25	86	0	74	41	7	10	40	1.68
4967914--4967959	23	2.0	23	83	8	58	36	6	6	50	1.54
5001548--5001596	13	3.6	13	83	5	53	20	6	0	73	1.04
5001540--5001600	28	2.2	27	85	2	77	21	4	0	73	1.01
5002223--5002272	7	7.6	7	80	14	54	24	2	0	74	0.93
5004242--5004374	1	133.0	1	68	0	59	1	2	13	82	0.83
5004245--5004373	17	7.4	18	73	14	78	1	2	13	82	0.85
5004234--5004369	14	9.5	14	71	19	68	2	2	13	81	0.90
5004234--5004374	55	2.6	53	81	10	144	2	2	12	82	0.87
5004242--5004374	52	2.6	50	79	15	139	1	2	13	82	0.83
5004405--5004673	38	7.2	38	88	2	373	41	20	15	22	1.90
5004408--5004673	75	3.5	75	88	1	390	41	20	15	22	1.90
5017011--5017050	21	1.9	21	89	0	62	17	2	0	80	0.83
5017186--5017247	7	9.0	7	78	13	51	24	3	0	72	0.99
5017165--5017247	18	4.7	18	82	10	91	26	2	2	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5017209--5017243	11	3.2	11	92	8	54	22	2	0	74	0.95
5028052--5028081	8	3.6	8	91	8	51	86	0	3	10	0.67
5028436--5028469	9	3.6	9	85	14	50	67	23	0	8	1.18
5028435--5028470	10	3.6	10	84	0	54	69	22	0	8	1.15
5029307--5029349	21	2.0	22	90	4	70	69	0	9	20	1.15
5039514--5039747	26	9.7	26	74	13	146	23	13	26	35	1.92
5039534--5039834	69	4.3	72	79	10	245	24	13	27	34	1.93
5039471--5039788	95	3.4	94	86	5	387	23	13	26	36	1.92
5039727--5039835	23	4.8	23	84	9	143	25	13	26	33	1.93
5039846--5039917	22	3.3	22	76	7	67	48	19	11	20	1.79
5048652--5049004	176	2.0	177	88	1	530	37	10	13	37	1.80
5058429--5058490	2	31.5	2	93	3	108	51	1	0	46	1.10
5058834--5058890	2	29.5	2	86	13	84	50	1	0	47	1.11
5058834--5058890	11	4.9	12	87	12	84	50	1	0	47	1.11
5058841--5058890	15	3.5	15	89	5	77	52	0	0	48	1.00
5058329--5059132	399	2.0	404	98	1	1557	37	15	15	31	1.89
5063238--5063325	39	2.4	37	86	9	117	35	14	11	38	1.82
5072201--5072242	14	3.0	14	83	13	59	47	0	2	50	1.14
5072520--5072671	67	2.3	67	89	2	225	28	11	25	34	1.91
5072730--5072876	79	1.9	79	89	2	233	38	12	5	42	1.66
5073051--5073163	60	1.9	60	90	0	181	11	17	10	60	1.59
5074251--5074350	52	1.9	52	95	0	182	28	7	27	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5075909--5075998	40	2.2	40	86	0	117	28	21	23	26	1.99
5078939--5079043	55	1.9	55	92	0	174	38	7	21	32	1.82
5086616--5086721	54	2.0	54	86	3	151	31	14	12	42	1.82
5094142--5094266	60	2.1	59	89	1	187	40	12	13	33	1.83
5097365--5097424	30	2.1	29	81	6	68	31	8	21	38	1.83
5101700--5101907	105	2.0	105	93	0	353	41	14	12	30	1.83
5102708--5103160	228	2.0	227	99	0	897	33	11	7	47	1.67
5104070--5104986	183	5.0	183	88	1	1284	42	9	12	35	1.76
5104070--5104986	365	2.5	366	88	2	1326	42	9	12	35	1.76
5111090--5111125	18	2.0	18	100	0	72	27	16	27	27	1.97
5114267--5114325	25	2.3	25	91	2	91	16	23	11	47	1.80
5114317--5114356	16	2.5	16	88	8	55	2	22	0	75	0.93
5114373--5114420	22	2.2	22	92	0	78	10	45	8	35	1.68
5114554--5114674	34	3.6	34	88	0	170	35	28	11	24	1.90
5115092--5115125	16	2.1	17	88	5	52	0	11	5	82	0.83
5120401--5120526	60	2.1	60	91	2	200	40	12	13	33	1.82
5124746--5125056	105	3.0	105	98	0	586	40	14	13	31	1.85
5127811--5128482	184	3.7	183	90	1	1006	43	9	12	34	1.74
5128917--5128973	25	2.3	25	96	0	105	38	26	21	14	1.91
5129674--5129716	17	2.7	15	82	10	50	25	0	11	62	1.29
5152579--5152615	18	2.1	18	94	0	65	32	18	24	24	1.97
5153317--5153341	13	1.9	13	100	0	50	52	0	40	8	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5154198--5154275	41	1.9	41	91	0	129	44	7	10	37	1.67
5154831--5154887	28	2.0	29	89	3	89	43	0	0	56	0.99
5155645--5155695	26	1.9	27	84	4	68	49	3	0	47	1.20
5157410--5157493	2	42.0	2	87	0	87	48	9	1	40	1.43
5189039--5189122	41	2.0	41	88	0	123	38	19	19	23	1.93
5189927--5189991	23	3.0	21	77	20	62	53	1	1	43	1.19
5190024--5190121	40	2.4	41	86	6	128	52	1	2	44	1.19
5190101--5190273	77	2.2	78	81	11	187	51	1	5	41	1.33
5190306--5190349	22	2.0	23	86	4	63	50	2	2	45	1.27
5202767--5202825	27	2.1	29	81	6	68	0	22	5	72	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54