genome.fa.s7.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  39  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15638105--15638281	77	2.3	75	90	3	275	18	11	41	28	1.85
15638244--15638349	33	3.1	33	80	7	113	24	12	34	28	1.91
15643785--15643875	2	44.5	2	80	8	94	43	3	5	46	1.43
15644965--15645002	20	2.0	20	89	5	60	21	42	7	28	1.81
15645093--15645147	20	2.6	21	88	5	76	67	0	32	0	0.91
15651524--15651707	70	2.6	70	82	1	208	26	13	27	32	1.93
15652019--15652087	25	2.8	24	76	6	59	46	14	27	11	1.79
15676402--15676519	37	3.1	37	75	11	110	27	11	37	23	1.89
15677094--15677190	50	2.0	49	81	2	113	25	29	24	19	1.98
15677816--15677954	33	4.1	33	88	2	170	28	33	13	25	1.94
15677852--15678093	75	3.3	74	79	10	223	27	38	12	21	1.90
15677952--15678094	35	3.9	35	73	11	117	26	42	11	19	1.85
15679289--15679336	24	2.0	24	92	8	80	54	25	12	8	1.65
15682819--15682866	20	2.4	20	80	16	55	31	2	6	60	1.33
15683943--15684144	55	3.7	55	85	0	251	23	14	33	28	1.94
15688752--15688865	58	2.0	58	94	3	203	28	32	2	36	1.71
15689771--15689812	21	2.0	21	85	4	57	35	2	16	45	1.61
15694793--15694856	19	3.3	19	68	8	56	25	42	12	20	1.87
15694796--15694898	38	2.7	38	83	3	125	25	40	14	19	1.89
15698784--15698900	42	2.8	42	89	2	173	22	34	20	23	1.97
15701710--15701747	19	2.0	19	94	0	67	28	0	28	42	1.56
15710477--15710558	37	2.2	37	93	0	137	28	9	39	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15719631--15719697	2	33.0	2	82	5	73	44	1	5	46	1.37
15737531--15737634	45	2.3	43	84	11	138	26	15	32	25	1.95
15744847--15744887	21	1.9	22	85	5	57	17	24	4	53	1.63
15747546--15747776	41	5.1	44	73	13	166	28	15	33	22	1.95
15747546--15747641	45	2.2	45	84	1	122	30	16	29	23	1.96
15749434--15749468	2	17.5	2	100	0	70	51	0	0	48	1.00
15749984--15750013	16	1.9	16	93	6	53	60	20	0	20	1.37
15765834--15765936	38	2.6	39	79	11	113	22	36	17	23	1.94
15768165--15768238	36	2.1	36	92	5	123	33	12	27	27	1.92
15768493--15768640	35	4.4	32	71	16	113	37	28	11	22	1.89
15768466--15768640	67	2.6	67	85	3	255	35	26	12	25	1.92
15768493--15768621	32	3.8	33	71	18	106	35	27	11	25	1.91
15777684--15777857	67	2.6	66	87	7	253	33	25	13	27	1.93
15777688--15777837	32	4.5	33	78	15	157	33	24	14	28	1.94
15789213--15789280	19	3.6	19	70	7	66	22	16	39	22	1.92
15789217--15789313	38	2.5	40	88	3	144	21	15	40	22	1.91
15790953--15791003	15	3.4	15	84	10	68	27	1	19	50	1.58
15793033--15793078	20	2.3	20	88	0	65	30	4	23	41	1.74
15793042--15793079	20	1.9	20	94	0	67	31	0	28	39	1.57
15794159--15794183	13	1.9	13	100	0	50	44	0	8	48	1.32
15799193--15799240	25	1.9	25	95	0	87	18	22	12	45	1.83
15799275--15799317	4	10.0	4	97	2	59	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15799621--15799713	34	2.7	34	88	0	132	33	30	15	21	1.94
15799631--15799730	34	2.9	34	84	0	110	33	31	13	23	1.92
15799789--15799858	28	2.4	29	86	11	90	1	27	8	62	1.32
15799921--15799954	2	17.5	2	93	6	61	50	0	0	50	1.00
15807885--15807942	30	1.9	30	85	0	80	39	10	6	43	1.66
15809496--15809537	20	2.1	20	86	0	57	14	28	9	47	1.75
15810870--15810910	19	2.2	19	86	8	57	31	31	21	14	1.94
15820380--15820412	16	2.1	16	100	0	66	12	39	12	36	1.80
15829782--15829840	26	2.3	26	79	5	66	66	3	28	1	1.18
15832309--15832348	15	2.7	15	88	3	55	72	2	25	0	0.97
15835345--15835468	42	3.0	42	84	0	158	23	35	18	22	1.96
15836504--15836567	20	3.3	20	70	24	64	23	20	0	56	1.42
15836491--15836567	38	2.0	38	97	0	145	20	19	0	59	1.37
15836493--15836580	38	2.3	38	90	3	124	21	20	1	56	1.48
15839562--15840119	215	2.6	213	83	3	665	34	13	13	38	1.83
15845147--15845950	255	3.2	249	81	6	777	34	11	6	48	1.63
15847050--15847089	20	2.0	21	90	5	64	30	10	15	45	1.78
15848278--15848378	32	3.0	33	74	8	114	22	14	25	36	1.93
15848277--15848405	67	1.9	67	84	3	170	24	13	27	34	1.92
15855807--15855850	17	2.6	17	92	0	70	36	27	27	9	1.87
15855807--15855859	17	3.1	17	86	5	63	35	22	32	9	1.86
15856798--15856972	66	2.6	67	89	6	268	24	13	26	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15856801--15856976	35	5.2	35	74	16	142	24	13	27	35	1.92
15859253--15859411	42	3.8	41	82	1	192	23	17	35	23	1.95
15859253--15859414	84	1.9	84	88	2	245	23	17	35	22	1.95
15859253--15859435	84	2.2	84	85	4	228	22	19	34	23	1.96
15859253--15859465	84	2.5	84	82	6	200	23	17	35	23	1.95
15877098--15877151	28	2.0	27	88	3	81	29	20	18	31	1.96
15886651--15886710	30	2.1	29	81	6	68	31	8	21	38	1.83
15894831--15894890	30	2.1	29	81	6	68	31	8	21	38	1.83
15903011--15903070	30	2.1	29	81	6	68	31	8	21	38	1.83
15911191--15911250	30	2.1	29	81	6	68	31	8	21	38	1.83
15925036--15925092	25	2.3	25	79	14	64	14	26	14	45	1.82
15925119--15925144	5	5.2	5	100	0	52	0	19	0	80	0.71
15925306--15925420	34	3.4	34	92	3	178	34	26	10	28	1.89
15925751--15925782	2	16.0	2	100	0	64	50	0	0	50	1.00
15931820--15931860	5	8.2	5	94	0	73	78	0	21	0	0.76
15936293--15936429	35	3.9	35	89	0	184	34	8	30	27	1.85
15940226--15940274	2	24.5	2	95	0	80	44	0	4	51	1.20
15940289--15940348	2	32.5	2	84	15	85	53	0	0	46	1.00
15947197--15947307	2	56.5	2	82	7	120	45	0	5	47	1.32
15951057--15951109	28	1.9	27	88	3	79	28	22	18	30	1.98
15951154--15951199	20	2.3	20	88	7	67	45	17	4	32	1.68
15959445--15959487	22	2.0	22	85	0	59	44	13	6	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15961997--15962050	28	2.0	27	88	3	81	29	20	18	31	1.96
15962094--15962139	20	2.3	20	92	0	74	45	23	4	26	1.71
15962849--15962903	15	3.8	14	80	7	65	3	20	1	74	1.06
15962854--15962900	20	2.4	19	85	7	58	4	19	2	74	1.09
15963724--15963933	55	3.8	55	94	0	339	21	16	35	26	1.95
15963760--15963845	27	3.1	27	63	21	70	19	17	37	25	1.94
15963772--15963859	28	3.2	27	64	20	65	17	14	40	27	1.88
15963787--15963873	28	3.1	28	65	21	74	19	16	39	25	1.92
15966339--15966381	20	2.2	20	83	8	52	27	2	6	62	1.33
15967387--15967584	99	2.0	100	95	1	362	24	7	17	51	1.70
15973273--15973399	36	3.5	36	87	4	168	22	11	35	30	1.90
15973513--15973555	22	2.0	22	85	0	59	32	11	20	34	1.89
15979699--15979801	38	2.6	39	85	8	140	23	41	15	19	1.89
15985795--15986007	43	5.0	43	84	2	257	23	17	32	26	1.97
15995375--15995446	22	3.3	22	80	7	92	26	20	23	29	1.99
15995645--15995684	2	20.5	2	94	5	73	47	0	0	52	1.00
16000509--16000545	12	3.1	12	84	0	56	59	0	18	21	1.38
16012195--16012240	20	2.3	20	88	7	67	32	4	17	45	1.68
16012285--16012337	28	1.9	27	88	3	79	30	18	22	28	1.98
16012285--16012343	28	2.1	28	84	6	75	30	20	23	25	1.98
16017415--16017452	19	2.0	19	89	0	58	28	2	28	39	1.70
16020065--16020106	15	2.9	14	89	7	57	33	2	14	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16023379--16023403	13	1.9	13	100	0	50	44	0	8	48	1.32
16032162--16032199	19	2.0	19	94	0	67	28	0	28	42	1.56
16036680--16036742	20	3.2	20	90	2	101	25	3	41	30	1.71
16036746--16036776	16	1.9	16	100	0	62	45	6	6	41	1.55
16044010--16044056	2	23.5	2	95	0	85	48	2	0	48	1.13
16045998--16046022	13	1.9	13	100	0	50	48	8	0	44	1.32
16062045--16062180	35	4.0	34	75	10	134	27	12	27	32	1.93
16062014--16062138	32	3.8	32	75	7	117	25	15	28	31	1.95
16062010--16062169	67	2.4	67	85	8	229	26	12	28	32	1.93
16067519--16067616	43	2.3	43	85	0	142	27	19	28	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54