genome.fa.s7.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  34  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13854690--13854727	20	1.9	20	89	10	60	39	2	2	55	1.28
13854744--13854782	18	2.2	17	86	4	51	46	2	7	43	1.46
13858788--13858817	15	2.0	15	93	0	51	30	33	0	36	1.58
13864091--13864137	20	2.3	20	88	0	67	36	42	10	10	1.74
13867895--13867968	25	2.9	26	72	6	71	32	16	29	21	1.95
13888963--13888996	17	2.0	17	88	0	50	29	14	14	41	1.86
13889189--13889496	80	3.9	80	88	4	437	31	9	25	34	1.87
13897039--13897075	19	1.9	19	94	0	65	43	27	0	29	1.55
13900886--13900931	15	3.1	15	90	0	74	56	15	2	26	1.50
13903583--13903620	19	2.0	19	94	0	67	42	28	0	28	1.56
13913047--13913081	16	2.2	16	89	0	52	45	0	2	51	1.16
13913155--13913215	22	2.8	22	82	7	63	62	0	0	37	0.96
13913483--13913534	19	2.7	18	71	11	50	28	5	1	63	1.28
13914800--13917663	366	7.8	366	76	5	2195	31	18	24	24	1.97
13914816--13917660	730	3.9	726	77	5	2489	32	18	24	24	1.97
13917379--13918232	295	2.9	292	82	2	992	32	19	23	24	1.98
13917992--13918798	366	2.2	365	78	5	831	33	18	22	25	1.97
13927870--13927907	18	2.1	18	85	9	51	0	31	0	68	0.90
13927949--13928022	35	2.1	35	85	5	96	40	24	12	22	1.88
13929183--13929218	17	2.2	17	90	9	58	41	5	0	52	1.24
13936821--13936868	23	2.1	23	100	0	96	25	33	12	29	1.92
13943057--13943098	15	2.8	15	88	0	66	57	14	2	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13944489--13944513	13	1.9	13	100	0	50	48	8	0	44	1.32
13950745--13950828	35	2.4	34	80	7	98	40	23	13	22	1.89
13951941--13952010	30	2.3	30	97	0	131	42	4	0	52	1.20
13953447--13953479	2	16.5	2	100	0	66	51	0	0	48	1.00
13955420--13955468	19	2.7	18	81	9	55	14	4	2	79	0.97
13964016--13964088	25	2.8	27	77	10	71	39	13	5	41	1.68
13966319--13966356	19	2.0	19	89	0	58	28	0	34	36	1.58
13966411--13966478	28	2.5	28	90	2	111	32	20	17	29	1.96
13982400--13982459	30	2.1	29	81	6	68	30	5	23	41	1.75
13984877--13984918	19	2.2	19	83	8	50	59	0	19	21	1.38
13985903--13985939	2	18.5	2	94	0	65	45	0	2	51	1.15
13985939--13985964	4	6.5	4	100	0	52	23	0	0	76	0.78
13986258--13986292	2	17.5	2	100	0	70	51	0	0	48	1.00
13995495--13995549	20	2.8	20	76	10	60	47	3	5	43	1.44
13996960--13997039	2	39.0	2	82	5	70	2	38	1	56	1.21
13996963--13997059	50	1.9	50	97	2	178	4	32	2	59	1.28
13999671--13999719	12	4.3	12	80	15	50	40	34	16	8	1.78
14006311--14006371	31	2.0	31	90	0	95	31	9	8	50	1.65
14007602--14007648	23	2.1	23	84	7	62	12	10	6	70	1.33
14011439--14011483	2	22.5	2	95	0	81	51	2	0	46	1.13
14011548--14011647	36	2.8	36	79	0	119	24	39	16	21	1.92
14012299--14012336	20	1.9	20	88	0	58	34	15	26	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14014185--14014222	11	3.5	11	82	3	51	23	0	21	55	1.44
14017316--14017374	2	30.5	2	89	6	95	50	1	0	47	1.11
14017587--14017643	2	28.5	2	96	0	105	50	1	0	47	1.11
14017708--14017807	36	2.8	36	81	0	119	24	39	15	22	1.92
14021131--14021171	21	2.0	21	85	0	55	34	14	29	21	1.93
14021163--14021208	23	2.0	23	95	0	83	36	21	23	17	1.94
14031609--14031664	16	3.3	16	76	16	51	66	0	12	21	1.25
14032542--14032567	3	8.7	3	100	0	52	30	0	0	69	0.89
14033557--14033602	24	1.9	24	81	0	56	28	10	21	39	1.87
14034085--14034406	31	10.7	31	74	9	211	31	24	9	34	1.88
14035600--14035653	23	2.3	23	100	0	108	33	27	7	31	1.84
14037602--14037639	19	2.0	19	100	0	76	42	31	0	26	1.56
14049171--14049338	61	2.8	61	95	0	291	22	20	32	25	1.97
14052744--14052774	13	2.3	14	94	5	55	19	12	9	58	1.62
14057637--14057665	9	3.0	10	90	10	51	51	6	0	41	1.28
14061507--14061546	19	2.0	20	95	4	73	30	0	27	42	1.56
14064729--14064939	105	2.0	105	97	0	395	39	6	6	48	1.53
14071392--14071429	19	2.0	19	94	0	67	39	34	0	26	1.57
14074155--14074195	21	2.0	20	90	4	64	29	7	21	41	1.80
14074561--14074653	46	2.0	46	95	0	168	25	18	16	39	1.91
14081726--14081776	16	3.0	17	77	8	59	62	11	5	19	1.49
14082520--14082545	2	13.0	2	100	0	52	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14082545--14082583	2	19.0	2	89	5	60	46	2	0	51	1.14
14085594--14085679	45	1.9	45	87	0	127	36	12	19	31	1.90
14089254--14089486	105	2.2	105	82	3	272	26	16	12	44	1.83
14090018--14090224	39	5.2	40	78	8	199	42	14	20	22	1.88
14090015--14090254	80	3.0	79	83	7	281	43	15	19	22	1.87
14096902--14096959	23	2.5	23	83	5	64	15	32	17	34	1.91
14098136--14098210	27	2.8	27	72	0	78	34	18	28	18	1.95
14098118--14098239	54	2.3	54	77	5	129	33	22	25	18	1.97
14098319--14098355	2	18.5	2	100	0	74	51	0	0	48	1.00
14099968--14100085	37	3.2	37	91	0	191	29	11	34	23	1.91
14108573--14108606	14	2.3	15	95	5	61	47	0	38	14	1.45
14110497--14110531	17	2.1	17	100	0	70	40	11	11	37	1.77
14110631--14110730	50	2.0	50	100	0	200	42	12	16	30	1.84
14121492--14121899	201	2.0	201	96	0	753	30	13	28	27	1.94
14125184--14125218	12	2.9	12	91	0	52	51	8	22	17	1.72
14134862--14134889	6	4.7	6	100	0	56	0	0	46	53	1.00
14137779--14137806	2	14.0	2	100	0	56	50	0	0	50	1.00
14140156--14140213	21	2.8	20	84	2	71	27	20	24	27	1.99
14147885--14147934	23	2.2	24	76	20	54	2	16	0	82	0.77
14147894--14147954	24	2.4	26	76	20	67	8	16	0	75	1.03
14149594--14149697	42	2.5	42	86	7	133	52	1	1	43	1.23
14149670--14149727	17	3.0	20	80	14	68	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14149670--14149729	20	3.2	19	79	15	70	56	0	0	43	0.99
14149692--14149748	27	2.1	26	81	12	62	59	0	0	40	0.97
14152318--14152353	19	1.9	18	88	5	54	16	5	47	30	1.70
14153572--14153619	5	8.8	5	82	11	51	79	4	14	2	0.98
14154498--14154537	18	2.2	18	90	0	62	52	15	2	30	1.55
14162010--14162067	30	1.9	30	92	0	98	75	0	22	1	0.89
14162035--14162110	22	3.5	22	73	10	75	73	0	22	3	0.99
14162013--14162065	15	3.5	15	72	10	54	75	0	22	1	0.90
14162014--14162068	26	2.0	28	86	10	78	74	0	23	1	0.91
14162032--14162129	44	2.2	43	79	12	101	72	0	22	5	1.04
14169954--14170093	21	6.5	21	77	13	115	32	15	26	26	1.95
14169966--14170041	23	3.4	21	80	7	71	34	15	25	25	1.95
14170045--14170085	22	1.9	21	85	5	55	39	17	17	26	1.91
14170082--14170231	75	2.0	74	88	1	219	36	15	20	28	1.92
14171852--14171889	17	2.2	18	86	13	53	15	10	2	71	1.25
14175095--14175127	8	3.7	9	84	15	50	3	0	9	87	0.63
14175093--14175141	24	2.1	23	85	7	64	4	0	12	83	0.77
14175096--14175136	18	2.3	18	87	8	57	4	0	12	82	0.81
14188140--14188178	15	2.7	15	84	15	55	20	20	25	33	1.97
14188133--14188685	76	7.4	76	78	4	491	24	17	20	37	1.93
14188133--14188670	147	3.6	149	81	4	593	24	17	20	38	1.93
14188577--14188796	119	1.8	119	84	1	298	23	16	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14190115--14190284	81	2.1	81	81	2	198	25	31	15	27	1.95
14205026--14205175	52	2.9	52	87	4	214	25	8	15	51	1.70
14216457--14216936	94	5.1	94	80	3	516	24	29	19	27	1.98
14216647--14216725	23	3.4	23	66	3	68	25	30	17	26	1.97
14216457--14216921	141	3.3	141	79	4	524	24	29	18	27	1.98
14216457--14216936	47	10.2	47	80	1	460	24	29	19	27	1.98
14216936--14216982	23	2.0	23	95	0	85	23	36	14	25	1.93
14216940--14216992	23	2.3	23	86	0	70	26	37	9	26	1.87
14219185--14219381	45	4.3	45	84	5	234	41	28	9	20	1.83
14219185--14219381	91	2.1	90	81	9	220	41	28	9	20	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54