genome.fa.s7.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  51  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20098449--20098491	2	21.5	2	100	0	86	51	0	0	48	1.00
20098782--20098823	21	2.0	21	90	0	66	30	16	28	23	1.96
20100489--20100533	23	2.0	23	91	8	74	24	0	2	73	0.95
20100488--20100569	37	2.2	36	78	6	85	25	1	3	69	1.12
20100505--20100552	17	2.6	18	84	12	62	25	0	2	72	0.95
20100487--20100549	18	3.3	18	73	6	54	28	0	3	68	1.05
20106454--20106519	30	2.2	31	83	5	82	33	16	7	42	1.77
20107998--20108060	25	2.5	25	89	0	90	31	30	12	25	1.93
20113879--20113935	2	29.5	2	92	7	100	49	0	0	50	1.00
20114483--20114541	23	2.6	22	83	2	73	47	1	3	47	1.29
20115489--20115556	30	2.3	29	84	2	91	23	22	32	22	1.98
20115489--20115591	30	3.5	30	78	2	84	23	19	33	24	1.97
20123398--20123450	7	7.7	7	87	4	54	77	5	16	0	0.96
20123398--20123455	13	4.1	14	78	14	57	77	5	17	0	0.94
20123398--20123455	18	3.1	18	80	7	62	77	5	17	0	0.94
20132799--20132839	3	13.7	3	94	0	73	34	2	0	63	1.08
20151079--20151369	95	3.0	93	86	6	388	47	16	19	15	1.82
20153207--20153435	115	2.0	115	99	0	449	34	10	12	42	1.77
20164661--20164693	12	2.8	12	86	4	50	51	9	24	15	1.72
20166159--20166299	34	4.0	36	74	18	134	32	9	34	22	1.87
20166168--20166305	68	2.0	70	87	7	201	31	10	34	23	1.88
20166343--20166450	38	2.9	38	87	1	146	37	7	36	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20167953--20168073	36	3.0	40	70	21	101	23	11	39	25	1.88
20167936--20168099	81	2.0	81	85	2	222	24	11	38	25	1.89
20168262--20168301	21	2.0	21	85	9	57	25	10	20	45	1.81
20168622--20168661	21	2.0	21	85	9	57	25	10	20	45	1.81
20167989--20168708	360	2.0	359	99	0	1431	29	10	25	33	1.90
20171585--20171687	28	3.7	28	84	1	109	29	16	20	33	1.94
20179118--20179195	28	2.8	28	84	5	88	28	16	21	33	1.95
20184952--20185053	38	2.6	40	82	3	127	20	16	41	21	1.90
20193005--20193060	26	2.2	26	81	12	62	26	0	8	64	1.23
20196517--20196636	35	3.5	35	68	11	104	32	13	24	30	1.93
20196484--20196625	67	2.1	68	92	1	232	30	11	24	33	1.91
20197321--20197376	25	2.2	25	83	0	76	30	19	23	26	1.98
20198535--20198586	20	2.6	20	78	0	59	53	13	3	28	1.57
20201156--20201237	29	2.9	28	87	7	112	31	15	18	34	1.92
20203837--20203879	15	2.9	15	86	3	61	0	16	0	83	0.64
20203838--20203879	5	8.4	5	82	10	50	0	16	0	83	0.65
20216366--20216398	17	1.9	17	88	11	50	42	9	3	45	1.51
20216420--20216457	18	2.0	20	85	10	53	65	0	10	23	1.23
20216550--20216714	28	5.6	28	78	8	141	38	10	7	43	1.66
20222903--20222958	23	2.4	23	93	0	103	30	42	3	23	1.71
20222953--20223083	43	3.0	44	80	6	135	21	36	16	25	1.94
20226826--20226866	21	1.9	22	90	5	66	51	7	24	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20226826--20226870	20	2.2	21	84	11	58	55	6	22	15	1.63
20226824--20226871	21	2.3	20	79	10	60	56	6	22	14	1.61
20231869--20231894	2	13.0	2	100	0	52	50	0	0	50	1.00
20232205--20232262	29	2.0	29	93	0	98	41	0	37	20	1.53
20234063--20234089	13	2.1	13	100	0	54	14	55	7	22	1.64
20238103--20238136	16	2.1	16	94	0	59	41	0	29	29	1.57
20251147--20251201	2	27.5	2	96	0	101	1	0	47	50	1.11
20264951--20265066	42	2.8	42	85	2	144	28	29	22	19	1.98
20277731--20277783	2	26.0	2	96	3	97	49	1	49	0	1.12
20277858--20277927	2	36.0	2	94	5	126	51	0	48	0	1.00
20292176--20292350	46	3.9	46	82	7	223	22	32	16	28	1.96
20292178--20292393	46	4.9	43	80	6	209	22	32	16	27	1.96
20292181--20292395	89	2.4	89	88	0	313	22	33	16	27	1.95
20296223--20296268	24	1.9	24	86	0	65	21	13	17	47	1.81
20299373--20299435	27	2.3	27	94	0	108	30	23	23	22	1.99
20304126--20304221	38	2.5	39	86	3	131	17	36	20	25	1.94
20305095--20305143	22	2.2	21	75	10	53	42	8	36	12	1.72
20310648--20310746	38	2.6	38	85	3	126	19	37	20	23	1.94
20312392--20312437	19	2.3	20	88	3	67	63	17	6	13	1.50
20317674--20317698	13	1.9	13	100	0	50	48	8	0	44	1.32
20320623--20320665	16	2.7	16	82	10	52	62	11	0	25	1.29
20321864--20321943	21	3.9	21	73	16	78	36	11	13	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20323084--20323169	31	2.8	30	79	6	100	36	17	8	38	1.79
20324653--20324698	21	2.1	22	84	4	58	41	2	0	56	1.11
20325564--20325592	2	14.5	2	100	0	58	51	0	48	0	1.00
20326948--20326996	23	2.2	21	80	16	55	67	6	2	24	1.24
20338042--20338093	28	1.9	27	84	7	70	28	21	19	30	1.97
20338139--20338184	20	2.3	20	96	0	83	45	21	4	28	1.71
20340029--20340117	20	4.7	21	67	22	72	46	2	2	49	1.26
20340066--20340117	19	2.7	19	76	8	52	48	3	1	46	1.31
20358067--20358139	36	2.0	36	86	5	103	49	5	32	12	1.63
20374079--20374141	20	3.2	20	90	2	101	30	41	3	25	1.71
20374140--20374258	43	2.8	43	89	2	168	19	37	21	21	1.94
20383800--20383917	45	2.6	44	71	18	118	61	11	0	27	1.35
20385207--20385370	73	2.2	73	84	4	215	20	20	23	36	1.95
20391445--20391472	14	2.0	14	100	0	56	28	35	14	21	1.92
20394216--20394419	73	2.8	73	79	5	200	22	19	19	39	1.93
20394791--20394850	27	2.2	27	87	0	84	48	8	11	31	1.69
20394914--20394977	27	2.4	27	82	10	69	40	23	6	29	1.79
20396815--20396857	22	2.0	22	85	0	59	16	6	32	44	1.74
20397657--20397705	22	2.2	22	92	0	80	30	6	24	38	1.80
20397664--20397728	22	3.0	22	90	0	94	30	6	24	38	1.80
20397939--20397987	22	2.2	22	88	0	71	22	10	18	48	1.77
20402577--20402694	62	1.9	62	82	0	146	53	4	9	33	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20404528--20404606	23	3.4	23	85	1	86	40	25	7	26	1.82
20404545--20404871	23	14.2	23	79	6	279	33	24	11	31	1.90
20405169--20405236	26	2.6	26	83	6	84	50	5	11	32	1.63
20407118--20407173	15	3.7	15	83	4	60	46	14	26	12	1.80
20409026--20409081	23	2.4	23	90	0	85	35	33	8	21	1.85
20408985--20409261	123	2.3	123	83	0	356	34	31	11	22	1.90
20409652--20409700	20	2.5	20	100	0	98	36	10	10	42	1.73
20412602--20412627	2	13.0	2	100	0	52	50	0	0	50	1.00
20414774--20414807	17	1.9	18	88	5	52	38	11	14	35	1.83
20418398--20418459	27	2.3	28	80	8	83	41	19	8	30	1.80
20423390--20423571	60	3.0	60	86	3	233	23	32	20	23	1.98
20424249--20424308	13	4.5	13	71	21	52	1	35	0	63	1.05
20424250--20424314	20	3.2	20	86	2	94	1	33	0	64	1.03
20431189--20431221	2	16.5	2	100	0	66	51	0	48	0	1.00
20431202--20431357	79	2.0	78	98	0	294	42	11	27	17	1.83
20431958--20432051	35	2.6	37	86	6	106	23	13	34	28	1.93
20431916--20432083	36	4.7	36	75	11	148	20	13	36	29	1.90
20431916--20432083	71	2.3	72	79	8	173	20	13	36	29	1.90
20438765--20438794	2	15.0	2	100	0	60	50	0	50	0	1.00
20438884--20438915	2	16.0	2	100	0	64	50	0	50	0	1.00
20438686--20438913	119	1.9	118	99	0	447	35	9	27	26	1.88
20439338--20439413	34	2.1	36	86	11	104	42	10	5	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20443280--20443332	20	2.7	20	77	11	54	28	28	7	35	1.84
20443400--20443447	20	2.5	19	80	12	53	4	18	2	75	1.07
20452587--20452646	30	2.1	30	84	6	79	40	21	6	31	1.79
20465235--20465385	43	3.5	43	83	1	178	21	35	19	24	1.96
20466646--20466694	26	1.9	26	84	12	66	30	18	22	28	1.97
20469025--20469227	102	2.0	101	96	0	361	35	11	23	29	1.89
20498750--20498861	53	2.1	54	86	1	154	29	12	21	36	1.90
20498758--20498887	53	2.5	53	80	2	145	32	11	20	35	1.89
20531856--20531904	24	2.0	24	84	7	64	53	6	24	16	1.66
20557159--20557269	32	3.5	31	81	4	114	37	28	6	27	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54