genome.fa.s7.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  24  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10339448--10339554	27	4.0	27	90	3	155	28	20	14	36	1.92
10339466--10339628	51	3.2	51	84	3	193	33	14	12	39	1.84
10339448--10339603	26	6.0	26	84	5	172	30	17	13	38	1.88
10339543--10339628	25	3.4	25	81	9	111	37	10	10	41	1.74
10342082--10342132	5	10.6	5	91	4	79	0	21	0	78	0.75
10342686--10342720	2	17.5	2	100	0	70	48	0	0	51	1.00
10348915--10348948	16	2.1	16	94	0	59	52	20	11	14	1.73
10352458--10352486	2	15.0	2	92	7	51	51	0	0	48	1.00
10360555--10360616	30	2.1	30	87	0	88	37	17	8	37	1.80
10370731--10370762	14	2.3	15	89	10	50	65	0	21	12	1.25
10371813--10371943	63	2.1	63	100	0	262	35	14	18	31	1.91
10372076--10372132	24	2.4	24	90	0	87	40	17	12	29	1.86
10385260--10385317	28	2.1	28	81	15	68	24	20	22	32	1.98
10385371--10385408	20	1.9	20	100	0	76	44	21	5	28	1.73
10390225--10390287	31	2.0	31	96	0	117	28	0	23	47	1.52
10392604--10392655	25	2.1	25	100	0	104	40	3	23	32	1.72
10395454--10395493	2	20.5	2	94	5	73	50	0	0	50	1.00
10395489--10395519	16	1.9	16	100	0	62	51	35	0	12	1.40
10395495--10395521	14	1.9	14	100	0	54	51	37	0	11	1.37
10400055--10400099	23	2.0	23	90	0	72	22	13	28	35	1.92
10403666--10404041	76	5.0	75	85	2	466	22	16	25	35	1.95
10403666--10404044	152	2.5	151	85	1	517	22	16	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10406304--10406648	152	2.3	151	83	3	428	32	14	21	31	1.93
10406411--10406821	151	2.7	151	82	6	442	32	16	19	31	1.94
10408235--10408281	23	2.0	23	87	0	67	29	23	17	29	1.97
10408291--10408638	23	15.1	23	71	6	123	25	31	13	29	1.94
10408410--10408581	47	3.7	47	75	4	168	29	32	11	27	1.91
10408381--10408589	93	2.2	92	82	2	256	28	32	11	27	1.92
10408329--10408638	23	13.5	22	72	8	140	25	31	13	29	1.93
10408743--10408820	23	3.4	23	83	0	84	21	34	12	30	1.91
10415532--10415564	2	16.5	2	93	0	57	0	45	0	54	0.99
10415745--10415822	31	2.5	31	89	0	111	34	17	16	30	1.93
10416460--10416506	23	2.0	23	87	0	67	29	23	17	29	1.97
10416554--10416656	23	4.5	23	75	4	91	24	33	13	28	1.93
10416607--10416664	23	2.5	23	82	0	71	22	32	18	25	1.97
10416616--10416866	104	2.4	104	81	1	297	27	30	11	29	1.92
10416795--10416943	23	6.5	23	74	0	118	22	32	11	33	1.90
10416797--10416943	46	3.2	45	74	3	141	23	31	10	34	1.89
10416970--10417047	23	3.4	23	80	0	75	21	32	15	30	1.94
10437116--10437169	21	2.6	21	75	0	63	24	20	22	33	1.97
10437502--10437610	40	2.7	40	78	13	134	28	23	20	27	1.99
10439686--10439728	20	2.2	20	83	8	52	23	4	6	65	1.37
10444594--10444627	17	1.9	18	88	5	52	32	47	14	5	1.69
10466301--10466333	2	16.5	2	100	0	66	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10466487--10466541	21	2.6	21	85	0	74	25	12	16	45	1.83
10467898--10468132	98	2.4	100	89	4	370	25	12	7	53	1.65
10490827--10490867	2	20.5	2	84	0	55	43	0	0	56	0.99
10490827--10490867	12	3.4	12	89	0	64	43	0	0	56	0.99
10491899--10491931	11	3.2	11	83	16	52	9	9	0	81	0.87
10491889--10491941	20	2.7	19	85	5	79	9	13	0	77	0.99
10492287--10492319	15	2.1	16	88	5	50	15	3	15	66	1.37
10492372--10492407	19	1.9	18	94	5	63	52	0	25	22	1.47
10493377--10496957	164	21.8	164	99	0	7135	27	14	15	42	1.86
10498140--10498310	63	2.7	63	82	1	220	26	32	15	25	1.96
10499292--10499395	32	3.5	32	73	17	114	34	6	40	18	1.77
10499291--10499441	57	2.6	57	91	2	232	36	5	40	17	1.73
10499321--10499420	25	3.7	26	73	18	96	32	6	43	19	1.75
10499413--10499473	31	2.0	31	90	0	95	47	0	31	21	1.51
10500828--10500872	19	2.3	20	81	11	58	55	0	2	42	1.12
10507848--10507999	57	2.7	57	87	3	209	36	5	39	19	1.74
10507947--10508024	31	2.5	32	80	4	86	42	3	35	17	1.68
10509130--10509330	32	6.7	31	70	17	115	37	5	37	18	1.76
10509188--10509284	25	3.6	25	72	17	86	31	6	42	19	1.76
10509154--10509287	57	2.4	57	93	0	232	33	5	41	19	1.76
10510438--10510567	32	4.3	32	72	16	116	34	6	40	18	1.78
10510496--10510592	25	3.6	25	74	17	104	30	5	44	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10510462--10510623	57	2.9	57	91	2	247	35	4	41	18	1.72
10510567--10510644	31	2.5	32	85	4	104	42	2	37	17	1.64
10511422--10511485	29	2.2	29	86	2	85	29	6	18	45	1.74
10514955--10514989	13	2.8	13	95	4	63	28	17	8	45	1.77
10517587--10517680	31	3.1	30	63	15	75	30	15	15	37	1.90
10517557--10517680	62	2.0	61	95	1	221	32	16	14	37	1.89
10527239--10527276	20	1.9	20	100	0	76	28	5	21	44	1.73
10532955--10532987	17	1.9	17	100	0	66	30	18	3	48	1.63
10533619--10533687	23	2.9	23	69	26	63	39	0	0	60	0.97
10533737--10533790	27	2.0	27	85	7	74	50	1	3	44	1.30
10534787--10534844	18	2.8	21	75	17	59	29	3	0	67	1.07
10538616--10538728	2	57.5	2	71	16	67	44	5	4	46	1.46
10538644--10538726	25	3.3	25	75	12	89	42	4	4	48	1.45
10538612--10538687	41	2.0	37	87	12	109	47	6	3	42	1.48
10538783--10538836	10	5.3	10	77	4	54	81	0	11	7	0.87
10538785--10538834	24	2.1	23	85	10	66	84	0	8	8	0.79
10540703--10540752	25	2.0	25	84	0	64	32	24	22	22	1.98
10543624--10543652	9	3.2	9	100	0	58	44	34	20	0	1.52
10543950--10543988	9	4.3	9	84	12	53	30	7	20	41	1.80
10543950--10543988	18	2.2	18	95	0	69	30	7	20	41	1.80
10544586--10544683	30	3.3	30	77	9	103	38	5	4	52	1.43
10551696--10551720	11	2.3	11	100	0	50	48	8	8	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10562772--10562804	9	3.8	9	88	8	50	24	0	12	63	1.28
10562772--10562804	17	1.9	17	93	0	57	24	0	12	63	1.28
10562772--10562801	8	3.6	8	95	4	51	23	0	10	66	1.21
10563244--10563309	30	2.2	30	83	5	80	40	10	18	30	1.84
10571929--10571982	4	13.8	4	81	11	67	0	29	0	70	0.88
10571914--10571983	26	2.7	26	84	2	86	0	32	0	67	0.91
10574907--10574944	4	9.5	4	88	0	58	44	23	5	26	1.74
10574963--10575007	2	22.5	2	95	0	81	46	0	2	51	1.13
10575328--10575385	29	2.0	30	82	3	73	68	8	13	8	1.37
10587133--10587162	2	15.0	2	92	0	51	46	0	3	50	1.18
10592047--10592101	27	2.0	27	100	0	110	27	18	25	29	1.98
10592746--10592820	22	3.4	21	75	14	62	20	5	2	72	1.17
10595292--10595362	21	3.4	21	81	14	76	74	0	0	25	0.82
10595323--10595361	8	4.9	8	84	12	53	69	0	0	30	0.89
10595294--10595368	26	3.0	25	80	18	84	74	0	0	25	0.82
10595292--10595371	24	3.5	23	78	17	78	75	0	0	25	0.81
10595297--10595361	16	3.9	16	73	17	53	73	0	0	26	0.83
10595292--10595371	28	3.0	26	77	10	81	75	0	0	25	0.81
10597194--10597243	25	2.0	25	85	11	68	72	4	2	22	1.12
10597415--10597523	20	5.7	19	75	16	84	74	0	3	21	1.03
10597418--10597534	6	18.3	6	76	18	87	74	0	3	21	1.02
10597418--10597541	17	7.1	17	71	18	85	74	1	3	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10597418--10597531	56	2.0	56	85	9	153	74	0	3	21	1.02
10597464--10597541	14	5.4	14	73	23	56	75	2	1	20	0.99
10597415--10597547	13	10.2	13	70	18	89	72	1	3	21	1.08
10600480--10600504	13	1.9	13	100	0	50	64	12	8	16	1.49
10605055--10605177	62	2.0	62	96	0	228	49	23	7	19	1.73
10607640--10607698	28	2.1	28	87	6	84	25	10	32	32	1.89
10609476--10609798	161	2.0	160	92	2	533	24	24	11	39	1.88
10617541--10617649	54	2.0	54	98	0	209	35	10	28	25	1.88
10621481--10621521	20	2.0	20	86	9	57	2	19	0	78	0.87
10625352--10625387	18	1.9	19	88	5	56	80	0	16	2	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54