genome.fa.s7.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  15  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6741641--6742067	123	3.5	121	80	3	428	35	15	20	28	1.93
6741977--6742028	21	2.5	20	81	9	59	36	11	21	30	1.89
6742108--6742689	61	9.5	60	82	5	596	27	20	18	32	1.96
6742108--6742317	31	6.8	31	66	14	96	27	19	20	33	1.96
6742327--6742423	31	3.2	29	72	19	72	32	24	14	27	1.94
6742481--6742630	30	5.0	30	67	24	93	25	20	20	34	1.96
6742142--6742689	245	2.2	245	85	2	717	27	20	18	33	1.96
6748673--6748728	27	2.1	27	83	12	71	42	5	19	32	1.74
6751298--6751379	3	26.7	3	74	14	60	24	3	4	67	1.27
6751301--6751379	40	2.0	40	85	5	106	24	3	5	67	1.28
6751306--6751378	25	2.7	27	81	12	80	24	4	5	65	1.31
6752382--6752447	16	4.5	15	71	19	50	18	1	3	77	0.98
6752377--6752453	30	2.6	31	76	12	81	16	2	3	76	1.05
6756507--6756588	33	2.5	33	83	0	101	37	15	4	41	1.69
6761988--6762119	65	2.0	67	91	2	214	21	28	16	33	1.95
6763425--6763472	24	2.0	25	84	12	64	29	37	14	18	1.91
6767780--6767969	73	2.6	74	89	3	278	40	16	20	23	1.91
6778472--6778631	81	2.0	81	86	2	223	27	20	15	36	1.93
6784189--6784225	11	3.4	11	100	0	74	75	8	8	8	1.19
6785229--6785535	161	1.9	161	85	2	420	41	7	13	38	1.72
6791051--6791092	19	2.2	19	83	8	50	59	0	21	19	1.38
6791925--6792044	41	3.0	41	89	3	174	34	5	34	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6791925--6792044	38	3.1	38	87	3	159	34	5	34	25	1.80
6791932--6792079	38	3.8	38	81	4	136	31	8	33	27	1.86
6796691--6796854	84	2.0	84	82	2	204	31	21	12	34	1.91
6799948--6800006	9	6.3	10	73	11	54	74	0	0	25	0.82
6799973--6800025	5	11.4	5	78	9	51	79	0	1	18	0.83
6799945--6800023	13	6.5	13	67	25	57	74	0	1	24	0.89
6799945--6800025	27	3.0	26	80	7	72	75	0	1	23	0.88
6810681--6810869	59	3.2	59	96	1	351	31	12	21	34	1.91
6812753--6812777	13	1.9	13	100	0	50	88	0	0	12	0.53
6813058--6813103	21	2.1	23	84	8	60	47	4	6	41	1.49
6831211--6831239	2	15.0	2	92	7	51	48	0	51	0	1.00
6831314--6831340	2	13.5	2	100	0	54	48	0	51	0	1.00
6831215--6831412	101	2.0	100	98	1	387	39	8	29	22	1.82
6833263--6833311	24	2.1	23	84	3	62	55	8	6	30	1.54
6836607--6836754	48	3.2	47	88	3	210	40	27	7	24	1.82
6842785--6842818	17	2.1	16	88	5	50	58	0	0	41	0.98
6851521--6851583	25	2.6	24	82	9	83	68	0	31	0	0.90
6851549--6851582	14	2.5	14	90	4	52	70	0	29	0	0.87
6851521--6851582	10	6.3	10	74	20	51	69	0	30	0	0.89
6853023--6853081	28	2.1	28	96	0	109	25	38	11	23	1.89
6854509--6854561	21	2.5	21	96	3	97	30	24	5	39	1.78
6858575--6858620	20	2.3	20	88	0	65	30	2	23	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6858584--6858621	20	1.9	20	94	0	67	31	0	28	39	1.57
6871071--6871218	48	3.2	47	90	5	221	39	27	6	25	1.81
6877371--6877453	12	6.8	12	82	12	98	53	2	0	44	1.13
6877371--6877453	38	2.2	36	89	8	123	53	2	0	44	1.13
6877796--6877835	16	2.5	16	84	8	55	52	0	0	47	1.00
6878445--6879093	340	1.9	342	89	1	998	32	16	14	35	1.90
6879595--6879628	17	2.1	16	88	5	50	58	0	0	41	0.98
6882160--6882205	24	2.0	23	86	4	65	54	2	6	36	1.39
6898859--6898889	16	1.9	16	93	0	53	41	0	3	54	1.16
6899900--6899929	16	1.9	15	93	6	51	33	13	6	46	1.69
6904712--6904802	44	2.0	46	85	4	123	42	24	8	24	1.82
6908754--6908907	50	3.1	50	98	0	290	42	14	22	21	1.88
6922549--6922726	57	3.4	51	84	11	245	23	24	19	32	1.98
6922676--6922811	73	1.9	73	96	0	254	22	25	19	33	1.97
6922619--6922865	117	2.0	125	87	10	366	22	25	20	31	1.98
6922755--6922892	44	2.9	49	87	10	223	23	26	19	30	1.98
6922896--6922985	25	3.7	25	88	2	130	22	23	17	36	1.95
6922894--6922997	25	4.3	23	86	3	109	21	21	18	39	1.93
6923035--6923092	17	3.4	17	85	7	64	27	31	12	29	1.92
6923045--6923100	18	3.2	18	89	2	78	26	30	12	30	1.93
6923368--6923590	81	2.8	80	90	3	342	41	8	10	39	1.71
6925117--6925182	32	2.1	32	91	0	105	31	33	10	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6926088--6926121	17	1.9	18	88	5	52	50	0	8	41	1.34
6932563--6932657	35	2.7	35	90	0	145	36	15	13	33	1.87
6939777--6939818	13	3.3	13	86	6	59	61	0	0	38	0.96
6939775--6939817	17	2.5	17	81	7	52	60	0	0	39	0.97
6941223--6941262	12	3.1	13	85	10	55	55	0	2	42	1.13
6943541--6943571	15	2.1	15	93	0	53	32	32	6	29	1.83
6944408--6944472	21	3.2	21	75	20	59	55	4	4	35	1.41
6950230--6950262	2	16.5	2	100	0	66	51	0	0	48	1.00
6951773--6951863	44	2.1	44	95	4	166	36	13	14	36	1.85
6971499--6971523	13	1.9	13	100	0	50	24	52	8	16	1.70
6982561--6982590	2	15.0	2	92	0	51	50	0	3	46	1.18
6983401--6983427	8	3.4	8	100	0	54	51	0	0	48	1.00
6984335--6984378	16	2.7	17	86	10	65	27	2	0	70	0.99
6984335--6984399	15	4.2	15	75	19	53	32	3	0	64	1.09
6986547--6986652	43	2.5	43	84	0	131	25	18	36	18	1.94
6988131--6988171	14	2.8	15	79	13	50	78	9	0	12	0.98
6988131--6988192	29	2.1	28	82	8	70	79	9	1	9	1.02
6989068--6989294	119	1.9	119	86	0	319	44	16	10	29	1.80
7008727--7008756	14	2.1	14	100	0	60	33	13	16	36	1.88
7015731--7015893	78	2.1	78	82	0	191	25	14	34	25	1.94
7016582--7016615	17	2.0	17	100	0	68	58	0	11	29	1.33
7025435--7025461	6	4.5	6	100	0	54	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7037126--7037277	78	1.9	78	82	5	191	25	14	36	24	1.93
7039559--7039612	28	1.9	28	96	0	99	35	7	7	50	1.59
7042364--7042523	78	2.1	78	80	0	176	26	13	33	26	1.93
7043552--7043586	2	17.5	2	100	0	70	51	0	0	48	1.00
7043720--7043762	2	21.5	2	95	0	77	48	0	0	51	1.00
7043434--7043762	168	2.0	164	96	1	595	44	10	3	41	1.56
7050868--7050949	23	3.3	23	70	18	65	35	18	25	20	1.95
7050866--7050951	29	3.2	29	74	12	94	37	17	24	20	1.94
7050947--7051056	51	2.1	51	86	5	148	40	12	20	26	1.89
7051107--7051237	70	1.9	68	87	3	190	35	11	23	29	1.90
7057975--7058012	2	19.0	2	100	0	76	50	0	0	50	1.00
7058169--7058203	17	2.1	17	88	0	52	60	0	0	40	0.97
7073989--7074027	18	2.1	19	86	13	55	48	28	5	17	1.68
7077548--7077593	23	2.0	23	91	0	74	39	13	8	39	1.75
7084292--7084444	78	1.9	79	82	3	193	24	15	35	23	1.94
7088228--7088333	52	2.0	53	98	1	205	22	15	9	52	1.70
7089812--7090197	199	1.9	199	93	1	659	39	20	15	24	1.91
7090201--7090233	2	16.5	2	100	0	66	48	0	0	51	1.00
7091915--7092040	67	1.9	66	86	4	182	29	17	28	24	1.97
7094228--7094266	18	2.0	20	85	9	55	48	2	20	28	1.62
7096389--7096422	2	17.0	2	100	0	68	50	0	0	50	1.00
7112062--7112114	2	26.5	2	100	0	106	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7120635--7120697	33	1.9	33	93	0	108	36	14	9	39	1.78
7123584--7123620	17	2.1	18	90	5	58	8	86	2	0	0.62
7125599--7125665	29	2.2	31	79	12	77	46	4	1	47	1.31
7138632--7138675	11	3.8	12	82	14	56	75	4	2	18	1.09
7143580--7143729	66	2.3	66	98	0	291	38	17	23	20	1.93
7144024--7144057	16	2.1	16	88	0	50	52	5	2	38	1.41
7156981--7157059	36	2.2	36	86	0	104	27	8	8	54	1.61
7182928--7183007	2	40.0	2	96	0	142	47	0	0	51	1.00
7183388--7183514	30	4.2	30	73	11	98	32	23	11	33	1.90
7195034--7195328	154	1.9	155	86	4	420	19	26	19	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54