genome.fa.s7.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  21  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9224696--9224745	23	2.2	23	85	0	64	32	24	20	24	1.98
9250369--9250412	21	2.0	22	86	4	63	61	11	0	27	1.30
9258853--9258883	2	15.5	2	100	0	62	48	0	0	51	1.00
9274798--9274838	20	2.0	20	90	0	64	39	21	2	36	1.67
9274913--9274947	18	1.9	18	88	0	52	40	8	5	45	1.58
9290075--9290102	3	9.3	3	100	0	56	32	0	0	67	0.91
9291567--9291640	31	2.4	31	100	0	148	16	25	32	25	1.96
9301404--9301449	23	2.0	23	95	0	83	36	10	13	39	1.79
9304804--9304853	23	2.1	23	85	3	64	40	12	8	40	1.72
9304816--9304860	23	2.0	23	90	0	72	35	13	11	40	1.80
9307347--9307375	2	14.5	2	100	0	58	48	0	0	51	1.00
9317614--9317656	14	3.1	14	80	6	52	13	13	2	69	1.28
9317622--9317675	27	2.0	27	92	0	90	12	16	3	66	1.38
9321120--9321150	7	4.3	7	95	4	53	41	12	0	45	1.42
9323950--9324008	28	2.1	27	82	14	68	11	15	10	62	1.54
9327245--9327276	2	16.0	2	100	0	64	0	50	0	50	1.00
9327276--9327302	2	13.5	2	100	0	54	48	0	0	51	1.00
9342147--9342389	31	7.8	31	80	5	267	25	14	17	41	1.88
9346634--9346927	31	9.5	31	87	2	383	37	20	18	24	1.94
9347866--9347921	24	2.4	24	81	3	69	25	26	17	30	1.97
9348319--9348366	23	2.2	20	82	17	53	50	2	12	35	1.52
9348340--9348465	16	7.6	16	68	24	59	52	2	9	35	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9348314--9348449	52	2.6	51	85	6	175	49	3	11	35	1.57
9348403--9348454	14	3.5	14	80	12	50	50	3	11	34	1.57
9348415--9348487	33	2.3	33	83	4	87	56	5	6	31	1.49
9350029--9350272	31	7.9	31	77	1	220	39	20	16	23	1.92
9350063--9350264	93	2.2	93	81	6	264	40	18	17	23	1.91
9352444--9352762	31	10.3	31	88	0	404	36	20	18	24	1.94
9355964--9356284	47	6.8	47	81	4	353	23	31	18	26	1.97
9355966--9356044	24	3.3	23	70	16	72	17	32	21	27	1.96
9355973--9356284	94	3.3	94	86	4	416	24	32	17	26	1.97
9356287--9356400	58	2.0	58	96	0	210	29	33	9	27	1.89
9358846--9358909	30	2.2	29	86	5	85	62	0	1	35	1.05
9359243--9359294	26	2.0	26	92	0	86	26	26	26	19	1.99
9365073--9365113	20	2.0	20	85	0	55	36	21	4	36	1.75
9366143--9366181	19	2.1	18	85	4	51	25	17	12	43	1.85
9371032--9371060	14	2.1	14	100	0	58	58	20	0	20	1.39
9372738--9372804	14	5.2	13	77	15	68	67	0	1	31	1.00
9372752--9372818	33	2.1	31	89	10	100	67	0	2	29	1.06
9372737--9372817	15	5.6	14	74	12	51	67	0	2	29	1.03
9372857--9372930	34	2.1	34	85	9	96	63	1	6	28	1.28
9373146--9373202	15	3.8	15	88	0	78	31	21	8	38	1.84
9386203--9386279	35	2.2	35	88	2	109	22	10	36	31	1.88
9386203--9386313	36	3.1	36	81	2	125	21	9	36	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9417771--9417818	21	2.3	20	86	13	62	66	0	2	31	1.03
9417828--9417862	2	18.0	2	88	5	54	0	51	0	48	1.00
9417725--9418018	147	2.0	147	97	2	556	37	14	4	43	1.64
9417918--9417965	21	2.3	20	86	13	62	66	0	2	31	1.03
9417760--9418058	147	2.0	146	84	6	390	39	17	4	39	1.69
9420618--9420688	34	2.1	34	86	7	99	67	4	16	11	1.36
9421024--9422165	389	2.9	388	86	4	1471	39	18	14	27	1.90
9427556--9427591	16	2.2	17	95	5	65	50	0	2	47	1.15
9428490--9428595	34	3.1	34	76	0	95	41	24	11	22	1.86
9428712--9428779	20	3.4	19	73	16	57	73	4	4	17	1.17
9428705--9428780	21	3.6	21	73	10	66	72	3	3	19	1.17
9431013--9431056	23	1.9	23	90	0	70	75	4	0	20	0.98
9431036--9431078	17	2.4	18	84	7	61	72	0	0	27	0.85
9431022--9431077	13	4.4	14	74	19	50	71	1	0	26	0.96
9431018--9431078	15	3.9	16	79	10	63	73	1	0	24	0.92
9443072--9443349	37	7.4	38	86	2	285	24	14	18	43	1.87
9443073--9443366	75	3.9	75	84	3	315	24	13	18	43	1.86
9443535--9443593	14	4.3	14	77	12	59	72	5	3	18	1.17
9445481--9445506	10	2.6	10	100	0	52	73	0	0	26	0.84
9445838--9445901	23	2.7	24	82	4	76	73	0	3	23	0.97
9447643--9447685	13	3.2	13	84	15	61	69	0	2	27	1.00
9455608--9455649	13	3.3	12	90	6	57	14	9	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9455615--9455650	12	2.9	12	91	4	54	16	5	0	77	0.94
9455874--9455946	16	4.6	16	72	6	67	20	1	21	56	1.50
9456701--9456845	43	3.4	41	84	6	112	14	25	15	44	1.85
9456729--9456845	43	2.7	43	92	1	182	14	24	17	42	1.87
9465055--9465079	2	12.5	2	100	0	50	48	0	0	52	1.00
9480447--9480488	5	8.4	5	87	12	52	0	14	0	85	0.59
9480447--9480506	9	6.2	9	75	12	57	0	13	3	83	0.77
9480450--9480488	21	1.9	21	94	5	71	0	12	0	87	0.55
9480450--9480506	21	2.9	20	82	10	64	0	12	3	84	0.75
9483261--9483285	10	2.5	10	100	0	50	44	20	0	36	1.52
9503707--9503743	17	2.1	18	95	5	67	62	0	0	37	0.96
9503700--9503748	13	3.5	13	77	20	53	53	0	0	46	1.00
9503831--9504032	69	2.9	69	83	2	237	43	16	14	25	1.86
9504040--9504102	31	2.1	31	91	8	103	42	11	11	34	1.76
9504722--9504755	10	3.3	10	91	4	50	64	2	0	32	1.08
9511933--9511976	22	2.0	23	90	4	72	54	0	2	43	1.12
9514037--9514091	2	27.5	2	96	0	101	47	0	1	50	1.11
9516617--9516675	30	1.9	30	82	3	73	35	5	3	55	1.38
9516791--9516866	28	2.7	29	84	10	111	60	0	1	38	1.05
9526396--9526490	27	3.6	25	77	9	73	23	21	35	20	1.96
9526422--9526508	27	3.3	25	73	21	72	21	22	34	20	1.97
9526612--9526672	26	2.3	26	83	5	70	29	27	31	11	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9526424--9526723	133	2.2	132	76	4	300	28	23	29	18	1.98
9526659--9526750	27	3.4	28	79	5	109	23	21	34	19	1.96
9526661--9526780	54	2.2	54	82	5	136	22	22	35	19	1.96
9536162--9536195	9	3.8	9	100	0	68	32	23	8	35	1.86
9547897--9547946	15	3.3	15	91	0	82	50	2	10	38	1.48
9548170--9548253	32	2.6	32	83	5	107	29	0	1	69	0.97
9548175--9548258	6	13.3	6	69	9	51	28	0	1	70	0.95
9548179--9548240	27	2.4	25	77	17	65	29	0	1	69	0.98
9556851--9556903	19	2.8	19	78	16	56	64	1	0	33	1.05
9557721--9557802	39	2.1	39	100	0	164	31	15	9	42	1.80
9558475--9558520	20	2.3	20	96	0	83	28	4	21	45	1.71
9558565--9558617	28	1.9	27	88	3	79	33	18	18	28	1.95
9561491--9561529	15	2.7	15	88	11	55	17	0	7	74	1.05
9561926--9561975	22	2.2	23	85	3	66	34	8	0	58	1.28
9563152--9563195	2	22.0	2	100	0	88	50	0	0	50	1.00
9575922--9575960	18	2.2	17	86	4	51	46	0	5	48	1.24
9576131--9576159	2	14.5	2	100	0	58	0	48	0	51	1.00
9581684--9581737	27	1.9	28	88	7	83	59	1	0	38	1.08
9582088--9582172	44	1.9	44	92	0	143	40	11	2	45	1.53
9589288--9589380	31	3.0	31	100	0	186	54	3	9	32	1.49
9600858--9600914	20	3.0	20	72	15	66	56	3	0	40	1.17
9600961--9601027	19	3.5	19	69	4	55	50	5	1	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9614809--9614841	13	2.5	13	85	14	50	6	12	0	81	0.85
9614811--9614841	12	2.5	12	94	5	53	6	9	0	83	0.79
9616021--9616172	29	5.3	27	69	19	69	35	13	13	38	1.83
9616379--9616437	31	2.0	30	83	12	77	6	15	0	77	0.96
9624806--9624834	2	14.5	2	100	0	58	51	48	0	0	1.00
9625930--9626073	51	2.8	51	75	7	130	27	30	12	29	1.93
9629005--9629047	21	2.0	21	86	9	59	76	0	18	4	0.95
9629340--9629418	38	2.1	38	81	9	90	26	5	48	20	1.70
9639579--9639604	11	2.4	11	100	0	52	26	15	23	34	1.94
9641896--9641952	29	2.0	29	92	0	96	19	43	22	14	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54